BUG GH31355 fixed by adding more relevant error message #36169

TAJD · 2020-09-06T18:47:12Z

closes BUG: Calling cartesian_product with large combinatorial space overflows int64 gives misleading errors #31355
tests added / passed
passes black pandas
passes git diff upstream/master -u -- "*.py" | flake8 --diff

Added a test to trigger the reported error using code from the issue. An if statement was included to return a more helpful error message - borrowing the solution from the issue.

Co-authored-by: Tom Augspurger <TomAugspurger@users.noreply.github.com>

Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com>

…r intended (pandas-dev#35500) Co-authored-by: Kevin Sheppard <bashtage@users.noreply.github.com>

…andas-dev#35501) Co-authored-by: Fangchen Li <fangchen.li@outlook.com>

…R only) (pandas-dev#35535) Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com>

…andas-dev#35536) Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com>

Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com>

…v#35539) Co-authored-by: Terji Petersen <contribute@tensortable.com>

…andas-dev#35540) Co-authored-by: Daniel Saxton <2658661+dsaxton@users.noreply.github.com>

pandas-dev#35591) Co-authored-by: Matthew Roeschke <emailformattr@gmail.com>

…kle (pandas-dev#35593) Co-authored-by: Tom Augspurger <TomAugspurger@users.noreply.github.com>

…n DataFrame construction (pandas-dev#35597) Co-authored-by: jbrockmendel <jbrockmendel@gmail.com>

…ndas-dev#35600) Co-authored-by: gabicca <33315687+gabicca@users.noreply.github.com>

… with null values (pandas-dev#35602) Co-authored-by: Eric Goddard <egoddard1010@gmail.com>

…blocks (pandas-dev#35601) Co-authored-by: jbrockmendel <jbrockmendel@gmail.com>

…fault with center=True (pandas-dev#35610) Co-authored-by: Matthew Roeschke <emailformattr@gmail.com>

…ank style is ignored on False (pandas-dev#35619) Co-authored-by: attack68 <24256554+attack68@users.noreply.github.com>

…aFrame to numpy str (pandas-dev#35617) Co-authored-by: Daniel Saxton <2658661+dsaxton@users.noreply.github.com>

…est DeprecationWarning (pandas-dev#35623) Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com>

…umn selection no longer raises ValueError (pandas-dev#35651) Co-authored-by: Matthew Roeschke <emailformattr@gmail.com>

…True for non-numeric dtypes pandas-dev#3… (pandas-dev#35652) Co-authored-by: Isaac Virshup <ivirshup@gmail.com>

… row in-place (pandas-dev#35666) Co-authored-by: jbrockmendel <jbrockmendel@gmail.com>

…upby.rolling (pandas-dev#35699) Co-authored-by: Matthew Roeschke <emailformattr@gmail.com>

…rance error (pandas-dev#35702) Co-authored-by: Yutaro Ikeda <ikeda.yutaro@gmail.com>

…DataFrame with MI and datatime level (pandas-dev#35716) Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com>

…on master) (pandas-dev#35718)

… data (pandas-dev#35721) Co-authored-by: Joris Van den Bossche <jorisvandenbossche@gmail.com>

…renders (pandas-dev#35722) Co-authored-by: attack68 <24256554+attack68@users.noreply.github.com>

…ons (pandas-dev#35738) Co-authored-by: Richard Shadrach <45562402+rhshadrach@users.noreply.github.com>

…st version (pandas-dev#35761) Co-authored-by: Ali McMaster <alimcmaster1@gmail.com>

…-naive values (pandas-dev#36166)

pep8speaks · 2020-09-06T18:47:15Z

Hello @TAJD! Thanks for updating this PR. We checked the lines you've touched for PEP 8 issues, and found:

In the file pandas/_testing.py:

Line 2900:3: E227 missing whitespace around bitwise or shift operator
Line 2900:7: E225 missing whitespace around operator
Line 2902:1: E112 expected an indented block
Line 2902:1: E305 expected 2 blank lines after class or function definition, found 0
Line 2902:3: E225 missing whitespace around operator
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Line 2904:1: E112 expected an indented block
Line 2904:1: E305 expected 2 blank lines after class or function definition, found 0
Line 2904:7: E225 missing whitespace around operator

In the file pandas/core/construction.py:

Line 53:1: E112 expected an indented block
Line 53:3: E227 missing whitespace around bitwise or shift operator
Line 53:7: E225 missing whitespace around operator
Line 54:5: E113 unexpected indentation
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In the file pandas/core/dtypes/dtypes.py:

Line 398:1: E122 continuation line missing indentation or outdented
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Line 400:8: E251 unexpected spaces around keyword / parameter equals
Line 402:1: E122 continuation line missing indentation or outdented
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In the file pandas/core/internals/managers.py:

Line 3:3: E227 missing whitespace around bitwise or shift operator
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Line 1911:5: E123 closing bracket does not match indentation of opening bracket's line
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In the file pandas/core/window/rolling.py:

Line 2214:1: E305 expected 2 blank lines after class or function definition, found 0
Line 2214:3: E227 missing whitespace around bitwise or shift operator
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In the file pandas/plotting/_matplotlib/core.py:

Line 1147:3: E227 missing whitespace around bitwise or shift operator
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In the file pandas/plotting/_matplotlib/timeseries.py:

Line 27:1: E112 expected an indented block
Line 27:3: E227 missing whitespace around bitwise or shift operator
Line 27:7: E225 missing whitespace around operator
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In the file pandas/tests/base/test_factorize.py:

Line 37:1: E305 expected 2 blank lines after class or function definition, found 1
Line 37:3: E227 missing whitespace around bitwise or shift operator
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In the file pandas/tests/frame/test_block_internals.py:

Line 631:3: E227 missing whitespace around bitwise or shift operator
Line 631:7: E225 missing whitespace around operator
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In the file pandas/tests/groupby/aggregate/test_aggregate.py:

Line 1066:3: E227 missing whitespace around bitwise or shift operator
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In the file pandas/tests/io/test_gcs.py:

Line 33:3: E227 missing whitespace around bitwise or shift operator
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In the file pandas/tests/plotting/common.py:

Line 16:3: E227 missing whitespace around bitwise or shift operator
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In the file pandas/tests/plotting/test_misc.py:

Line 404:1: E305 expected 2 blank lines after class or function definition, found 1
Line 404:3: E227 missing whitespace around bitwise or shift operator
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In the file pandas/tests/plotting/test_series.py:

Line 831:1: E305 expected 2 blank lines after class or function definition, found 1
Line 831:3: E227 missing whitespace around bitwise or shift operator
Line 831:7: E225 missing whitespace around operator
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In the file pandas/tests/series/test_constructors.py:

Line 1467:1: E305 expected 2 blank lines after class or function definition, found 0
Line 1467:3: E227 missing whitespace around bitwise or shift operator
Line 1467:7: E225 missing whitespace around operator
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In the file pandas/tests/util/test_assert_frame_equal.py:

Line 271:1: E305 expected 2 blank lines after class or function definition, found 0
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In the file pandas/tests/util/test_assert_series_equal.py:

Line 307:1: E305 expected 2 blank lines after class or function definition, found 0
Line 307:3: E227 missing whitespace around bitwise or shift operator
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Line 324:1: E305 expected 2 blank lines after class or function definition, found 0
Line 324:7: E225 missing whitespace around operator

In the file pandas/tests/window/test_grouper.py:

Line 212:1: E305 expected 2 blank lines after class or function definition, found 1
Line 212:3: E227 missing whitespace around bitwise or shift operator
Line 212:7: E225 missing whitespace around operator
Line 213:5: E113 unexpected indentation
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Line 282:5: E113 unexpected indentation
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Line 310:3: E227 missing whitespace around bitwise or shift operator
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Line 311:5: E113 unexpected indentation
Line 312:3: E225 missing whitespace around operator
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Line 366:5: E113 unexpected indentation
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Line 395:3: E227 missing whitespace around bitwise or shift operator
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Comment last updated at 2020-09-13 11:52:47 UTC

TAJD · 2020-09-07T06:47:36Z

Not sure how to fix the test failures - have these been seen before?

…eric_data (pandas-dev#36188) Co-authored-by: jbrockmendel <jbrockmendel@gmail.com>

…ntinel_none for 32bit (pandas-dev#36200) Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com>

pandas-dev#36134) (pandas-dev#36199) Co-authored-by: Harsh Sharma <51477130+hs2361@users.noreply.github.com>

… groupby.rolling (pandas-dev#36203) Co-authored-by: patrick <61934744+phofl@users.noreply.github.com>

…pandas-dev#36213) Co-authored-by: Matthew Roeschke <emailformattr@gmail.com>

Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com>

…#36217) Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com>

…e does not preserve dataframe index name (pandas-dev#36221) Co-authored-by: Irv Lustig <irv@princeton.com>

Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com>

rhshadrach · 2020-09-11T01:12:53Z

The failure looks related:

FAILED pandas/tests/test_sorting.py::TestSafeSort::test_codes_out_of_bound[-1]

This test ends up calling cartesian_product with the argument

X = [array([0, 1], dtype=int8), array([0, 1], dtype=int8), array([0, 1, 2], dtype=int8)]

TAJD · 2020-09-12T09:45:30Z

My working hypothesis is that the worker failure could be due to the size of the array created to test if the error is being raised.

Using tracemalloc it can be seen that the memory allocated during cartesian_product with X as the above value or using the test case for error bounds is around 4 petabytes. This sort of thing breaks the code when the memory is actually created. What I'm wondering is on how to limit the size of the array which is created or whether there is a way to pick a test input which triggers the error without breaking the machine being used.

jreback · 2020-09-13T13:18:09Z

@TAJD you need to merge master

TAJD · 2020-09-13T13:36:56Z

Thanks @jreback I should have read the documentation!

meeseeksmachine and others added 30 commits July 29, 2020 15:35

Backport PR pandas-dev#35452: DOC: Start 1.1.1 (pandas-dev#35458)

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Co-authored-by: Tom Augspurger <TomAugspurger@users.noreply.github.com>

Backport PR pandas-dev#35272: CI: Unpin pytest (pandas-dev#35469)

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Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com>

Backport PR pandas-dev#35477: MAINT: Use float arange when required o…

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…r intended (pandas-dev#35500) Co-authored-by: Kevin Sheppard <bashtage@users.noreply.github.com>

Backport PR pandas-dev#35470: CI: unpin isort 5 (pandas-dev#35134) (p…

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…andas-dev#35501) Co-authored-by: Fangchen Li <fangchen.li@outlook.com>

Backport PR pandas-dev#35467: CI: activate github actions on 1.1.x (P…

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…R only) (pandas-dev#35535) Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com>

Backport PR pandas-dev#35468: CI: activate azure pipelines on 1.1.x (p…

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…andas-dev#35536) Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com>

Backport PR pandas-dev#35502: CI: xfail numpy-dev (pandas-dev#35537)

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Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com>

Backport PR pandas-dev#35440: BUG: CategoricalIndex.format (pandas-de…

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…v#35539) Co-authored-by: Terji Petersen <contribute@tensortable.com>

Backport PR pandas-dev#35510: REGR: Check for float in isnaobj_old (p…

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…andas-dev#35540) Co-authored-by: Daniel Saxton <2658661+dsaxton@users.noreply.github.com>

Backport PR pandas-dev#35513: BUG: RollingGroupby respects __getitem__ (

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pandas-dev#35591) Co-authored-by: Matthew Roeschke <emailformattr@gmail.com>

Backport PR pandas-dev#35554: DOC: Document that read_hdf can use pic…

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…kle (pandas-dev#35593) Co-authored-by: Tom Augspurger <TomAugspurger@users.noreply.github.com>

Backport PR pandas-dev#35590: BUG: validate index/data length match i…

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…n DataFrame construction (pandas-dev#35597) Co-authored-by: jbrockmendel <jbrockmendel@gmail.com>

Backport PR pandas-dev#35547: Bug fix one element series truncate (pa…

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…ndas-dev#35600) Co-authored-by: gabicca <33315687+gabicca@users.noreply.github.com>

Backport PR pandas-dev#35582: BUG: to_timedelta fails on Int64 Series…

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… with null values (pandas-dev#35602) Co-authored-by: Eric Goddard <egoddard1010@gmail.com>

Backport PR pandas-dev#35578: BUG: df.shift(n, axis=1) with multiple …

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…blocks (pandas-dev#35601) Co-authored-by: jbrockmendel <jbrockmendel@gmail.com>

Backport PR pandas-dev#35562: BUG: Ensure rolling groupby doesn't seg…

c1676ce

…fault with center=True (pandas-dev#35610) Co-authored-by: Matthew Roeschke <emailformattr@gmail.com>

Backport PR pandas-dev#35588: BUG: fix styler cell_ids arg so that bl…

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…ank style is ignored on False (pandas-dev#35619) Co-authored-by: attack68 <24256554+attack68@users.noreply.github.com>

Backport PR pandas-dev#35473: REGR: Fix conversion of mixed dtype Dat…

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…aFrame to numpy str (pandas-dev#35617) Co-authored-by: Daniel Saxton <2658661+dsaxton@users.noreply.github.com>

Backport PR pandas-dev#35621: CI: Linux py36_locale failures with pyt…

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…est DeprecationWarning (pandas-dev#35623) Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com>

Backport PR pandas-dev#35639: BUG: RollingGroupby with closed and col…

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…umn selection no longer raises ValueError (pandas-dev#35651) Co-authored-by: Matthew Roeschke <emailformattr@gmail.com>

Backport PR pandas-dev#35522: BUG: Fix assert_equal when check_exact=…

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…True for non-numeric dtypes pandas-dev#3… (pandas-dev#35652) Co-authored-by: Isaac Virshup <ivirshup@gmail.com>

Backport PR pandas-dev#35633: BUG: DataFrame.apply with func altering…

ac40043

… row in-place (pandas-dev#35666) Co-authored-by: jbrockmendel <jbrockmendel@gmail.com>

Backport PR pandas-dev#35647: BUG: Support custom BaseIndexers in gro…

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…upby.rolling (pandas-dev#35699) Co-authored-by: Matthew Roeschke <emailformattr@gmail.com>

Backport PR pandas-dev#35654: BUG: pandas-devGH-35558 merge_asof tole…

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…rance error (pandas-dev#35702) Co-authored-by: Yutaro Ikeda <ikeda.yutaro@gmail.com>

Backport PR pandas-dev#35673: REGR: Dataframe.reset_index() on empty …

e8a8264

…DataFrame with MI and datatime level (pandas-dev#35716) Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com>

CI: doctest failure for read_hdf on 1.1.x (fixed in pandas-dev#35214 …

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…on master) (pandas-dev#35718)

Backport PR pandas-dev#35707: REGR: fix DataFrame.diff with read-only…

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… data (pandas-dev#35721) Co-authored-by: Joris Van den Bossche <jorisvandenbossche@gmail.com>

Backport PR pandas-dev#35664: BUG: Styler cell_ids fails on multiple …

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…renders (pandas-dev#35722) Co-authored-by: attack68 <24256554+attack68@users.noreply.github.com>

Backport PR pandas-dev#35723: agg with list of non-aggregating functi…

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…ons (pandas-dev#35738) Co-authored-by: Richard Shadrach <45562402+rhshadrach@users.noreply.github.com>

Backport PR pandas-dev#35754: CI: Min Pytest Cov Version/Restrict xdi…

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…st version (pandas-dev#35761) Co-authored-by: Ali McMaster <alimcmaster1@gmail.com>

meeseeksmachine and others added 3 commits September 6, 2020 14:07

Backport PR pandas-dev#36115: REGR: append tz-aware DataFrame with tz…

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…-naive values (pandas-dev#36166)

BUG GH31355 fixed by adding more relevant error message

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formatted code

b3dca88

TAJD closed this Sep 6, 2020

TAJD reopened this Sep 6, 2020

meeseeksmachine and others added 11 commits September 7, 2020 15:06

Backport PR pandas-dev#35882: BUG: item_cache invalidation in get_num…

a715964

…eric_data (pandas-dev#36188) Co-authored-by: jbrockmendel <jbrockmendel@gmail.com>

Backport PR pandas-dev#36191: TST: update test_series_factorize_na_se…

89057f4

…ntinel_none for 32bit (pandas-dev#36200) Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com>

BUG: shows correct package name when import_optional_dependency is ca… (

bb5cf8e

pandas-dev#36134) (pandas-dev#36199) Co-authored-by: Harsh Sharma <51477130+hs2361@users.noreply.github.com>

Backport PR pandas-dev#36152: Fix compressed multiindex for output of…

c899247

… groupby.rolling (pandas-dev#36203) Co-authored-by: patrick <61934744+phofl@users.noreply.github.com>

Backport PR pandas-dev#36208: BUG: GroupbyRolling with an empty frame (…

9bb2034

…pandas-dev#36213) Co-authored-by: Matthew Roeschke <emailformattr@gmail.com>

Backport PR pandas-dev#36205: DOC: doc fix (pandas-dev#36215)

d8da320

Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com>

Backport PR pandas-dev#36182: DOC: release date for 1.1.2 (pandas-dev…

e6fd1b6

…#36217) Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com>

TST: skip test_groupby_rolling_index_changed on 32bit (pandas-dev#36220)

2afdb3d

Backport PR pandas-dev#36141: BUG: copying series into empty datafram…

ee6e91c

…e does not preserve dataframe index name (pandas-dev#36221) Co-authored-by: Irv Lustig <irv@princeton.com>

RLS: 1.1.2

2a7d332

Backport PR pandas-dev#36183: DOC: Start 1.1.3 (pandas-dev#36242)

f757f62

Co-authored-by: Simon Hawkins <simonjayhawkins@gmail.com>

rhshadrach added Error Reporting Incorrect or improved errors from pandas Reshaping Concat, Merge/Join, Stack/Unstack, Explode labels Sep 11, 2020

rhshadrach added this to the 1.2 milestone Sep 11, 2020

rhshadrach removed this from the 1.2 milestone Sep 11, 2020

Thomas Dickson added 2 commits September 13, 2020 12:50

alter position of error message being raised

7a66dbb

alter position of error message being raised

76066ec

TAJD closed this Sep 13, 2020

TAJD mentioned this pull request Sep 13, 2020

ERR: Cartesian product error #36335

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BUG GH31355 fixed by adding more relevant error message #36169

BUG GH31355 fixed by adding more relevant error message #36169

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TAJD commented Sep 6, 2020 •

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TAJD commented Sep 7, 2020

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jreback commented Sep 13, 2020

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TAJD commented Sep 13, 2020

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BUG GH31355 fixed by adding more relevant error message #36169

BUG GH31355 fixed by adding more relevant error message #36169

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Comment last updated at 2020-09-13 11:52:47 UTC

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TAJD commented Sep 6, 2020 •

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