Skip to content

REL: 1.5.0 #3199

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 4 commits into from
Jun 3, 2020
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
5 changes: 5 additions & 0 deletions .mailmap
Original file line number Diff line number Diff line change
Expand Up @@ -45,6 +45,8 @@ Colin Buchanan <colinrbuchanan@gmail.com> <mankind@MacBook.local>
Daniel Brenner <daniel.brenner@me.com>
Daniel Clark <danieljclark87@gmail.com>
Daniel Geisler <daniel.geisler@gmail.com>
Daniel Geisler <daniel.geisler@gmail.com> <daniel.geisler@uniklinikum-dresden.de>
Daniel Geisler <daniel.geisler@gmail.com> <3453485+daniel-ge@users.noreply.github.com>
Daniel Ginsburg <daniel.ginsburg@childrens.harvard.edu>
Daniel McNamee <dmcx88@gmail.com>
David Ellis <dgellis90@gmail.com> <david-ellis@uiowa.edu>
Expand Down Expand Up @@ -89,6 +91,7 @@ Joerg Stadler <Joerg.Stadler@lin-magdeburg.de> <Stadler@lin-magdeburg.de>
John A. Lee <johnleenimh@gmail.com>
John A. Lee <johnleenimh@gmail.com> <leej3@users.noreply.github.com>
Joke Durnez <joke.durnez@gmail.com>
Jordi Huguet <jhuguetn@gmail.com>
Josh Warner <silvertrumpet999+github@gmail.com> <warner.joshua@mayo.edu>
Junhao WEN <anbai106@hotmail.com>
Kai Schlamp <schlamp@gmx.de>
Expand Down Expand Up @@ -117,6 +120,7 @@ Lukas Snoek <lukassnoek@gmail.com>
Marcel Falkiewicz <mfalkiewicz@gmail.com> <m.falkiewicz@nencki.gov.pl>
Martin Perez-Guevara <mperezguevara@gmail.com>
Mathias Goncalves <goncalves.mathias@gmail.com> <mathiasg@mit.edu>
Mathias Goncalves <goncalves.mathias@gmail.com> <mathiasg@stanford.edu>
Mathieu Dubois <mathieu.dubois@icm-institute.org> <mathieu.dubois@cea.fr>
Mathieu Dubois <mathieu.dubois@icm-institute.org> <duboismathieu_gaas@yahoo.fr>
Matteo Mancini <ingmatteomancini@gmail.com>
Expand Down Expand Up @@ -170,6 +174,7 @@ Steven Giavasis <sgiava77@gmail.com>
Steven Giavasis <sgiava77@gmail.com> <steven.giavasis@cmi-rsch-li001.childmind.org>
Steven Giavasis <sgiava77@gmail.com> <sgiavasis@ieee.org>
Steven Tilley <stilley@hollandbloorview.ca> <steve@steventilley.com>
Sulantha Mathotaarachchi <sulantha.s@gmail.com>
Tristan Glatard <tristan.glatard@mcgill.ca> <tristan.glatard@creatis.insa-lyon.fr>
Victor Férat <victor.ferat@live.fr>
Victor Férat <victor.ferat@live.fr> <vferat@fcbg.ch>
Expand Down
54 changes: 31 additions & 23 deletions .zenodo.json
Original file line number Diff line number Diff line change
Expand Up @@ -76,14 +76,14 @@
"name": "Dayan, Michael",
"orcid": "0000-0002-2666-0969"
},
{
"name": "Loney, Fred"
},
{
"affiliation": "Dartmouth College: Hanover, NH, United States",
"name": "Halchenko, Yaroslav O.",
"orcid": "0000-0003-3456-2493"
},
{
"name": "Loney, Fred"
},
{
"affiliation": "Florida International University",
"name": "Salo, Taylor",
Expand Down Expand Up @@ -288,6 +288,11 @@
"name": "Kong, Xiang-Zhen",
"orcid": "0000-0002-0805-1350"
},
{
"affiliation": "Division of Psychological and Social Medicine and Developmental Neuroscience, Faculty of Medicine, Technische Universit\u00e4t Dresden, Dresden, Germany",
"name": "Geisler, Daniel",
"orcid": "0000-0003-2076-5329"
},
{
"name": "Salvatore, John"
},
Expand Down Expand Up @@ -384,6 +389,11 @@
{
"name": "Cumba, Chad"
},
{
"affiliation": "University College London",
"name": "P\u00e9rez-Garc\u00eda, Fernando",
"orcid": "0000-0001-9090-3024"
},
{
"name": "Blair, Ross"
},
Expand All @@ -392,16 +402,6 @@
"name": "Iqbal, Shariq",
"orcid": "0000-0003-2766-8425"
},
{
"affiliation": "NIMH, Scientific and Statistical Computing Core",
"name": "Glen, Daniel",
"orcid": "0000-0001-8456-5647"
},
{
"affiliation": "Technische Universit\u00e4t Dresden, Faculty of Medicine, Department of Child and Adolescent Psychiatry",
"name": "Geisler, Daniel",
"orcid": "0000-0003-2076-5329"
},
{
"affiliation": "University of Iowa",
"name": "Welch, David"
Expand Down Expand Up @@ -429,11 +429,6 @@
"name": "Papadopoulos Orfanos, Dimitri",
"orcid": "0000-0002-1242-8990"
},
{
"affiliation": "University College London",
"name": "P\u00e9rez-Garc\u00eda, Fernando",
"orcid": "0000-0001-9090-3024"
},
{
"affiliation": "Leibniz Institute for Neurobiology",
"name": "Stadler, J\u00f6rg",
Expand Down Expand Up @@ -618,6 +613,10 @@
"name": "Gerhard, Stephan",
"orcid": "0000-0003-4454-6171"
},
{
"affiliation": "Enigma Biomedical Group",
"name": "Mathotaarachchi, Sulantha"
},
{
"name": "Saase, Victor"
},
Expand All @@ -635,6 +634,11 @@
"affiliation": "Vrije Universiteit Amsterdam",
"name": "Ort, Eduard"
},
{
"affiliation": "CNRS, UMS3552 IRMaGe",
"name": "Condamine, Eric",
"orcid": "0000-0002-9533-3769"
},
{
"affiliation": "Stanford University",
"name": "Lerma-Usabiaga, Garikoitz",
Expand All @@ -654,6 +658,11 @@
"name": "Pellman, John",
"orcid": "0000-0001-6810-4461"
},
{
"affiliation": "BarcelonaBeta Brain Research Center",
"name": "Huguet, Jordi",
"orcid": "0000-0001-8420-4833"
},
{
"affiliation": "University of Pennsylvania",
"name": "Junhao WEN",
Expand Down Expand Up @@ -684,6 +693,10 @@
"name": "Andberg, Sami Kristian",
"orcid": "0000-0002-5650-3964"
},
{
"affiliation": "Sagol School of Neuroscience, Tel Aviv University",
"name": "Baratz, Zvi"
},
{
"name": "Matsubara, K"
},
Expand Down Expand Up @@ -719,11 +732,6 @@
{
"name": "Shachnev, Dmitry"
},
{
"affiliation": "CNRS, UMS3552 IRMaGe",
"name": "Condamine, Eric",
"orcid": "0000-0002-9533-3769"
},
{
"name": "Flandin, Guillaume"
},
Expand Down
18 changes: 17 additions & 1 deletion doc/changelog/1.X.X-changelog.rst
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
1.5.0 (To be determined)
1.5.0 (June 03, 2020)
=========================

New feature release in the 1.5.x series.
Expand All @@ -8,20 +8,36 @@ In this release, the example scripts have been split out into their own package:

(`Full changelog <https://github.com/nipy/nipype/milestone/1.5.0?closed=1>`__)

* FIX: volterra_expansion_order documentation error (https://github.com/nipy/nipype/pull/3213)
* FIX: BET incorrect output paths (https://github.com/nipy/nipype/pull/3214)
* FIX: Terminal output in ``report.rst`` spreads one line per character (https://github.com/nipy/nipype/pull/3220)
* FIX: Allow parsing freesurfer 7 version string (https://github.com/nipy/nipype/pull/3216)
* FIX: Use PackageInfo to get NiftyReg version (https://github.com/nipy/nipype/pull/3194)
* FIX: Partial rollback of N4BiasFieldCorrection (https://github.com/nipy/nipype/pull/3188)
* FIX: ANTs' tools maintenance overhaul (https://github.com/nipy/nipype/pull/3180)
* FIX: load_resultfile crashes if open resultsfile from crashed job (https://github.com/nipy/nipype/pull/3182)
* FIX: FSL model.py make multiple F-tests (https://github.com/nipy/nipype/pull/3166)
* ENH: Restore ants.legacy interfaces (https://github.com/nipy/nipype/pull/3222)
* ENH: Add ``"TruncateImageIntensity"`` operation to ``ants.utils.Image.Math`` (https://github.com/nipy/nipype/pull/3210)
* ENH: SPM NewSegment multi-channel segmentation (https://github.com/nipy/nipype/pull/3162)
* ENH: Add reverse-ordered transform lists to ants.Registration outputs (https://github.com/nipy/nipype/pull/3192)
* ENH: Improve workflow connect performance (https://github.com/nipy/nipype/pull/3184)
* ENH: Add ``ConstrainedSphericalDeconvolution`` interface to replace ``EstimateFOD`` for MRtrix3's ``dwi2fod`` (https://github.com/nipy/nipype/pull/3176)
* ENH: Detect values for EulerNumber interface (https://github.com/nipy/nipype/pull/3173)
* ENH: Remove examples from repository (https://github.com/nipy/nipype/pull/3172)
* TEST: Clean up tests (https://github.com/nipy/nipype/pull/3195)
* TEST: Mock terminal output before testing changing default value (https://github.com/nipy/nipype/pull/3193)
* REF: make invocations of python and pytest consistent with the one used/desired python (https://github.com/nipy/nipype/pull/3208)
* REF: Prefer math.gcd to hand-rolled Euclid's algorithm (https://github.com/nipy/nipype/pull/3177)
* REF: Removed all uses of numpy_mmap (https://github.com/nipy/nipype/pull/3121)
* DOC: Sphinx 3 compatibility (https://github.com/nipy/nipype/pull/3206)
* DOC: Update links, typos in contributing guide (https://github.com/nipy/nipype/pull/3160)
* DOC: Update SelectFiles docstring to match actual behavior (https://github.com/nipy/nipype/pull/3041)
* DOC: Updated .zenodo.json file (https://github.com/nipy/nipype/pull/3167)
* DOC: Update .zenodo.json (https://github.com/nipy/nipype/pull/3165)
* MNT: Permit recent nilearns (https://github.com/nipy/nipype/pull/2841)
* MNT: Test Python 3.8 (https://github.com/nipy/nipype/pull/3154)
* MNT: Restore ReadTheDocs (https://github.com/nipy/nipype/pull/3207)
* MNT: Update Zenodo ordering based on commit count (https://github.com/nipy/nipype/pull/3169)

1.4.2 (February 14, 2020)
Expand Down
2 changes: 1 addition & 1 deletion nipype/info.py
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@

# nipype version information
# Remove -dev for release
__version__ = "1.5.0-rc1.post-dev"
__version__ = "1.5.0"


def get_nipype_gitversion():
Expand Down