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Nov 14, 2019
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66 changes: 44 additions & 22 deletions nipype/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -4,15 +4,20 @@
import os
from distutils.version import LooseVersion

from .info import (LONG_DESCRIPTION as __doc__, URL as __url__, STATUS as
__status__, __version__)
from .info import (
LONG_DESCRIPTION as __doc__,
URL as __url__,
STATUS as __status__,
__version__,
)
from .utils.config import NipypeConfig
from .utils.logger import Logging
from .refs import due
from .pkg_info import get_pkg_info as _get_pkg_info

try:
import faulthandler

faulthandler.enable()
except (ImportError, IOError) as e:
pass
Expand All @@ -26,18 +31,16 @@ def __call__(self, doctests=True, parallel=False):
try:
import pytest
except ImportError:
raise RuntimeError(
'py.test not installed, run: pip install pytest')
raise RuntimeError("py.test not installed, run: pip install pytest")
args = []
if not doctests:
args.extend(['-p', 'no:doctest'])
args.extend(["-p", "no:doctest"])
if parallel:
try:
import xdist
except ImportError:
raise RuntimeError(
"pytest-xdist required for parallel run")
args.append('-n auto')
raise RuntimeError("pytest-xdist required for parallel run")
args.append("-n auto")
args.append(os.path.dirname(__file__))
pytest.main(args=args)

Expand All @@ -51,8 +54,16 @@ def get_info():


from .pipeline import Node, MapNode, JoinNode, Workflow
from .interfaces import (DataGrabber, DataSink, SelectFiles, IdentityInterface,
Rename, Function, Select, Merge)
from .interfaces import (
DataGrabber,
DataSink,
SelectFiles,
IdentityInterface,
Rename,
Function,
Select,
Merge,
)


def check_latest_version(raise_exception=False):
Expand All @@ -63,11 +74,12 @@ def check_latest_version(raise_exception=False):
Raise a RuntimeError if a bad version is being used
"""
import etelemetry
logger = logging.getLogger('nipype.utils')

logger = logging.getLogger("nipype.utils")

INIT_MSG = "Running {packname} version {version} (latest: {latest})".format

latest = {"version": 'Unknown', "bad_versions": []}
latest = {"version": "Unknown", "bad_versions": []}
result = None
try:
result = etelemetry.get_project("nipy/nipype")
Expand All @@ -77,24 +89,34 @@ def check_latest_version(raise_exception=False):
if result:
latest.update(**result)
if LooseVersion(__version__) != LooseVersion(latest["version"]):
logger.info(INIT_MSG(packname='nipype',
version=__version__,
latest=latest["version"]))
if latest["bad_versions"] and \
any([LooseVersion(__version__) == LooseVersion(ver)
for ver in latest["bad_versions"]]):
message = ('You are using a version of Nipype with a critical '
'bug. Please use a different version.')
logger.info(
INIT_MSG(
packname="nipype", version=__version__, latest=latest["version"]
)
)
if latest["bad_versions"] and any(
[
LooseVersion(__version__) == LooseVersion(ver)
for ver in latest["bad_versions"]
]
):
message = (
"You are using a version of Nipype with a critical "
"bug. Please use a different version."
)
if raise_exception:
raise RuntimeError(message)
else:
logger.critical(message)
return latest


# Run telemetry on import for interactive sessions, such as IPython, Jupyter notebooks, Python REPL
if config.getboolean('execution', 'check_version'):
if config.getboolean("execution", "check_version"):
import __main__
if not hasattr(__main__, '__file__'):

if not hasattr(__main__, "__file__"):
from .interfaces.base import BaseInterface

if BaseInterface._etelemetry_version_data is None:
BaseInterface._etelemetry_version_data = check_latest_version()
2 changes: 1 addition & 1 deletion nipype/algorithms/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -7,4 +7,4 @@
Exaples: artifactdetect

"""
__docformat__ = 'restructuredtext'
__docformat__ = "restructuredtext"
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