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merged 1 commit into from
Feb 9, 2018
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enh: improve travis build reliability #2433

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75 changes: 42 additions & 33 deletions .travis.yml
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Original file line number Diff line number Diff line change
@@ -1,55 +1,64 @@
cache:
apt: true
dist: trusty
sudo: required

language: python
# our build matrix
python:
- 2.7
- 3.4
- 3.5
- 3.6

env:
- INSTALL_DEB_DEPENDECIES=true NIPYPE_EXTRAS="doc,tests,fmri,profiler" CI_SKIP_TEST=1
- INSTALL_DEB_DEPENDECIES=false NIPYPE_EXTRAS="doc,tests,fmri,profiler" CI_SKIP_TEST=1
- INSTALL_DEB_DEPENDECIES=true NIPYPE_EXTRAS="doc,tests,fmri,profiler,duecredit" CI_SKIP_TEST=1
- INSTALL_DEB_DEPENDECIES=true NIPYPE_EXTRAS="doc,tests,fmri,profiler" PIP_FLAGS="--pre" CI_SKIP_TEST=1

addons:
apt:
packages:
- xvfb
- fusefat
- graphviz

cache:
directories:
- ${HOME}/.cache

before_install:
- function apt_inst {
if $INSTALL_DEB_DEPENDECIES; then sudo rm -rf /dev/shm; fi &&
if $INSTALL_DEB_DEPENDECIES; then sudo ln -s /run/shm /dev/shm; fi &&
bash <(wget -q -O- http://neuro.debian.net/_files/neurodebian-travis.sh) &&
sudo apt-get -y update &&
sudo apt-get -y install xvfb fusefat graphviz &&
if $INSTALL_DEB_DEPENDECIES; then travis_retry sudo apt-get install -y -qq
fsl afni elastix fsl-atlases; fi &&
if $INSTALL_DEB_DEPENDECIES; then
- if $INSTALL_DEB_DEPENDECIES; then sudo rm -rf /dev/shm; sudo ln -s /run/shm /dev/shm; fi
- travis_retry bash <(wget -q -O- http://neuro.debian.net/_files/neurodebian-travis.sh);
- if $INSTALL_DEB_DEPENDECIES; then
travis_retry sudo apt-get -y update &&
travis_retry sudo apt-get install -y -qq fsl afni elastix fsl-atlases;
fi;
- if $INSTALL_DEB_DEPENDECIES; then
source /etc/fsl/fsl.sh;
source /etc/afni/afni.sh;
export FSLOUTPUTTYPE=NIFTI_GZ; fi }
- function conda_inst {
export CONDA_HOME=$HOME/conda &&
wget https://repo.continuum.io/miniconda/Miniconda${TRAVIS_PYTHON_VERSION:0:1}-latest-Linux-x86_64.sh
-O /home/travis/.cache/conda.sh &&
bash /home/travis/.cache/conda.sh -b -p ${CONDA_HOME} &&
export PATH=${CONDA_HOME}/bin:$PATH &&
hash -r &&
conda config --set always_yes yes --set changeps1 no &&
conda update -q conda &&
conda config --add channels conda-forge &&
conda install python=${TRAVIS_PYTHON_VERSION} &&
conda install -y icu &&
pip install -r requirements.txt &&
pushd $HOME;
git clone https://github.com/INCF/pybids.git;
cd pybids;
pip install -e .;
popd; }
# Add install of vtk and mayavi to test mesh (disabled): conda install -y vtk mayavi
- travis_retry apt_inst
- travis_retry conda_inst
export FSLOUTPUTTYPE=NIFTI_GZ;
fi;

# handle python operations separately to reduce timeouts
- wget https://repo.continuum.io/miniconda/Miniconda${TRAVIS_PYTHON_VERSION:0:1}-latest-Linux-x86_64.sh
-O /home/travis/.cache/conda.sh
- bash ${HOME}/.cache/conda.sh -b -p ${HOME}/conda
- export PATH=${HOME}/conda/bin:$PATH
- hash -r
- conda config --set always_yes yes --set changeps1 no
- travis_retry conda update -q conda
- conda config --add channels conda-forge
- travis_retry conda install -y python=${TRAVIS_PYTHON_VERSION} icu
- travis_retry pip install -r requirements.txt
- travis_retry git clone https://github.com/INCF/pybids.git ${HOME}/pybids &&
pip install -e ${HOME}/pybids

install:
- travis_retry pip install $PIP_FLAGS -e .[$NIPYPE_EXTRAS]

script:
- py.test -v --doctest-modules nipype

deploy:
provider: pypi
user: satra
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