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allow float as weight in afni's Allineate #2204

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Merged
merged 2 commits into from
Oct 4, 2017
Merged

allow float as weight in afni's Allineate #2204

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d181f4c
allow float as weight
salma1601 Oct 3, 2017
40b66be
use deprecated for weight_file
salma1601 Oct 4, 2017
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8 changes: 8 additions & 0 deletions nipype/interfaces/afni/preprocess.py
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Original file line number Diff line number Diff line change
Expand Up @@ -356,9 +356,17 @@ class AllineateInputSpec(AFNICommandInputSpec):
weight_file = File(
argstr='-weight %s',
exists=True,
deprecated='1.0.0', new_name='weight',
desc='Set the weighting for each voxel in the base dataset; '
'larger weights mean that voxel count more in the cost function. '
'Must be defined on the same grid as the base dataset')
weight = traits.Either(
File(exists=True), traits.Float(),
argstr='-weight %s',
desc='Set the weighting for each voxel in the base dataset; '
'larger weights mean that voxel count more in the cost function. '
'If an image file is given, the volume must be defined on the '
'same grid as the base dataset')
out_weight_file = traits.File(
argstr='-wtprefix %s',
desc='Write the weight volume to disk as a dataset',
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4 changes: 4 additions & 0 deletions nipype/interfaces/afni/tests/test_auto_Allineate.py
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Expand Up @@ -117,7 +117,11 @@ def test_Allineate_inputs():
),
warpfreeze=dict(argstr='-warpfreeze',
),
weight=dict(argstr='-weight %s',
),
weight_file=dict(argstr='-weight %s',
deprecated='1.0.0',
new_name='weight',
),
zclip=dict(argstr='-zclip',
),
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