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fix: more fast fixes #1525

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Merged
merged 1 commit into from
Jun 24, 2016
Merged

fix: more fast fixes #1525

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3 changes: 3 additions & 0 deletions nipype/interfaces/fsl/preprocess.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1573,6 +1573,9 @@ def _gen_fname(self, name):
method = 'none'
if isdefined(self.inputs.method) and self.inputs.method != 'none':
method = 'fast'
if self.inputs.list_of_specific_structures and \
self.inputs.method == 'auto':
method = 'none'

if isdefined(self.inputs.method_as_numerical_threshold):
thres = '%.4f' % self.inputs.method_as_numerical_threshold
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5 changes: 5 additions & 0 deletions nipype/interfaces/fsl/tests/test_preprocess.py
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Expand Up @@ -579,3 +579,8 @@ def test_first_genfname():
value = first._gen_fname(name='original_segmentations')
expected_value = os.path.abspath('segment_all_none_origsegs.nii.gz')
yield assert_equal, value, expected_value
first.inputs.method = 'auto'
first.inputs.list_of_specific_structures = ['L_Hipp', 'R_Hipp']
value = first._gen_fname(name='original_segmentations')
expected_value = os.path.abspath('segment_all_none_origsegs.nii.gz')
yield assert_equal, value, expected_value