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Merged
merged 2 commits into from
Apr 12, 2016
Merged

Applymask #1429

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98012c8
fix: removed list_outputs because it isn't needed
akeshavan Apr 11, 2016
66069cd
doc: make check-before-commit
akeshavan Apr 11, 2016
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5 changes: 0 additions & 5 deletions nipype/interfaces/freesurfer/utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -527,11 +527,6 @@ class ApplyMask(FSCommand):
input_spec = ApplyMaskInputSpec
output_spec = ApplyMaskOutputSpec

def _list_outputs(self):
outputs = self._outputs().get()
outputs["out_file"] = os.path.abspath(self.inputs.out_file)
return outputs


class SurfaceSnapshotsInputSpec(FSTraitedSpec):

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6 changes: 3 additions & 3 deletions nipype/workflows/smri/freesurfer/recon.py
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Original file line number Diff line number Diff line change
Expand Up @@ -82,7 +82,7 @@ def link_masks(subjects_dir, subject_id):
def create_reconall_workflow(name="ReconAll", plugin_args=None,
recoding_file=None):
"""Creates the ReconAll workflow in nipype.

Example
-------
>>> from nipype.workflows.smri.freesurfer import create_skullstripped_recon_flow
Expand Down Expand Up @@ -200,7 +200,7 @@ def checkarg(arg, default):
'lookup_table',
'wm_lookup_table',
'awk_file']

config_node = pe.Node(niu.Function(params,
params,
setconfig),
Expand Down Expand Up @@ -509,7 +509,7 @@ def completemethod(datasinked_files, subject_id):
reconall.connect([(datasink, completion, [('out_file', 'datasinked_files')]),
(inputspec, completion, [('subject_id', 'subject_id')]),
(completion, postds_outputspec, [('subject_id', 'subject_id')])])


#### Workflow additions go here
if recoding_file:
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