Skip to content

Error in Mrtrix3's DWIPreproc #3595

Closed
@GalKepler

Description

@GalKepler

Summary

The _list_outputs method of DWIPreproc tries to set up an input called "export_grad_mrtrix", which should be "out_grad_mrtrix", causing it to fail.

Actual behavior

AttributeError: 'DWIPreprocInputSpec' object has no attribute 'export_grad_mrtrix'

Expected behavior

No AttributeError raising when running DWIPreproc...

How to replicate the behavior

from nipype.interfaces import mrtrix3 as mrt

dwipreproc = mrt.DWIPreproc(rpe_options="pair", align_seepi=True,)
dwipreproc.inputs.pe_dir = "j-"
dwipreproc.inputs.in_epi = "path_to_epi"
dwipreproc.inputs.dwi_file = "path_to_dwi"
dwipreproc.run()

Platform details:

{'commit_hash': 'c31d206',
 'commit_source': 'repository',
 'networkx_version': '2.8.4',
 'nibabel_version': '4.0.1',
 'nipype_version': '1.8.6',
 'numpy_version': '1.23.0',
 'pkg_path': '/home/zvi/Projects/connectome_plasticity/venv/lib/python3.9/site-packages/nipype',
 'scipy_version': '1.8.1',
 'sys_executable': '/home/zvi/Projects/connectome_plasticity/venv/bin/python',
 'sys_platform': 'linux',
 'sys_version': '3.9.14 (main, Sep  7 2022, 23:43:29) \n[GCC 9.4.0]',
 'traits_version': '6.3.2'}

Execution environment

  • My python environment outside container

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions