Description
Summary
glm = GLM.GeneralLinearModel()
TypeError: init() missing 1 required positional argument: 'X'
Actual behavior
180627-13:22:25,768 workflow ERROR:
Node model_estimate.a0 failed to run on host af6c3de2e4a0.
180627-13:22:25,770 workflow ERROR:
Saving crash info to /home/gody7334/Project/nipype/nipype_examples/crash-20180627-132225-gody7334-model_estimate.a0-9800893f-3500-4ebf-8598-1d2f95d8
aed9.pklz
Traceback (most recent call last):
File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/pipeline/plugins/multiproc.py", line 68, in run_node
result['result'] = node.run(updatehash=updatehash)
File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/pipeline/engine/nodes.py", line 480, in run
result = self._run_interface(execute=True)
File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/pipeline/engine/nodes.py", line 564, in _run_interface
return self._run_command(execute)
File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/pipeline/engine/nodes.py", line 644, in _run_command
result = self._interface.run(cwd=outdir)
File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/interfaces/base/core.py", line 521, in run
runtime = self._run_interface(runtime)
File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/interfaces/nipy/model.py", line 180, in _run_interface
glm = GLM.GeneralLinearModel()
TypeError: init() missing 1 required positional argument: 'X'
Expected behavior
How to replicate the behavior
Script/Workflow details
Please put URL to code or code here (if not too long).
https://github.com/nipy/nipype/blob/a7a9c85c79cb1412ba03406074f83200447ef50b/examples/fmri_nipy_glm.py
Platform details:
{'pkg_path': '/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype', 'commit_source': 'archive substitution', 'commit_hash': '%h', 'nipype_ver
sion': '1.1.0-dev', 'sys_version': '3.6.5 | packaged by conda-forge | (default, Apr 6 2018, 13:39:56) \n[GCC 4.8.2 20140120 (Red Hat 4.8.2-15)]', 'sys_execu
table': '/opt/miniconda-latest/envs/neuro/bin/python', 'sys_platform': 'linux', 'numpy_version': '1.14.5', 'scipy_version': '1.1.0', 'networkx_version': '2.1
', 'nibabel_version': '2.3.0', 'traits_version': '4.6.0'}
1.1.0-dev
Execution environment
Choose one
- Container
nipype_tutorial:latest docker