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Merged
merged 4 commits into from
Oct 20, 2020
Merged

REL: 3.2.0 #960

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1fa5600
MNT: Update mailmap
effigies Sep 16, 2020
7da8b89
DOC: Note new minimum Numpy
effigies Oct 16, 2020
76a9cfd
MNT: Update author list, zenodo ordering
effigies Oct 20, 2020
0469d5a
DOC: Changelog
effigies Oct 20, 2020
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11 changes: 9 additions & 2 deletions .mailmap
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Expand Up @@ -36,21 +36,28 @@ Gael Varoquaux <gael.varoquaux@normalesup.org> GaelVaroquaux <gael.varoquaux@nor
Gregory R. Lee <grlee77@gmail.com> Gregory R. Lee <gregory.lee@cchmc.org>
Ian Nimmo-Smith <iannimmosmith@gmail.com> Ian Nimmo-Smith <ian.nimmo-smith@mrc-cbu.cam.ac.uk>
Jaakko Leppäkangas <jaeilepp@student.jyu.fi> jaeilepp <jaeilepp@student.jyu.fi>
Jakub Kaczmarzyk <jakub.kaczmarzyk@gmail.com>
Jakub Kaczmarzyk <jakub.kaczmarzyk@gmail.com> <jakubk@mit.edu>
Jasper J.F. van den Bosch <japsai@gmail.com> Jasper <japsai@gmail.com>
Jean-Baptiste Poline <jbpoline@gmail.com> jbpoline <jbpoline@gmail.com>
Jon Haitz Legarreta <jon.haitz.legarreta@gmail.com> Jon Haitz Legarreta Gorroño <jon.haitz.legarreta@gmail.com>
Jonathan Daniel <jonathand655@gmail.com>
Jonathan Daniel <jonathand655@gmail.com> <36337649+jond01@users.noreply.github.com>
Kesshi Jordan <Kesshi.Jordan@ucsf.edu> kesshijordan <Kesshi.Jordan@ucsf.edu>
Kevin S. Hahn <kevinshahn@gmail.com> Kevin S. Hahn <kshahn@stanford.edu>
Konstantinos Raktivan <constracti@gmail.com> constracti <constracti@gmail.com>
Krish Subramaniam <krish.subramaniam@gmail.com> Krish Subramaniam <krish@monster.nmr.mgh.harvard.edu>
Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com>
Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <chrisgo@google.com>
Marc-Alexandre Côté <marc.cote.19@gmail.com> Marc-Alexandre Cote <marc.cote.19@gmail.com>
Mathias Goncalves <mathiasg@mit.edu> mathiasg <mathiasg@mit.edu>
Mathias Goncalves <mathiasg@mit.edu>
Mathias Goncalves <mathiasg@mit.edu> <mathiasg@stanford.edu>
Matthew Cieslak <mattcieslak@gmail.com> Matt Cieslak <mattcieslak@gmail.com>
Michael Hanke <michael.hanke@gmail.com> <mhanke-guest@82381867-18eb-0310-98a2-9474e637aba2>
Michael Hanke <michael.hanke@gmail.com> <michaelhanke@mvpa1.dartmouth.edu>
Michiel Cottaar <MichielCottaar@protonmail.com> Michiel Cottaar <MichielCottaar@protonmail.ch>
Michiel Cottaar <MichielCottaar@protonmail.com>
Michiel Cottaar <MichielCottaar@protonmail.com> <MichielCottaar@protonmail.ch>
Michiel Cottaar <MichielCottaar@protonmail.com> <MichielCottaar@gmail.com>
Ly Nguyen <nguyen60@seattleu.edu> lxn2 <lxn2@uw.edu>
Oliver P. Hinds <ohinds@gmail.com> ohinds <ohinds@gmail.com>
Or Duek <orduek@gmail.com>
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36 changes: 24 additions & 12 deletions .zenodo.json
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Expand Up @@ -48,16 +48,16 @@
"name": "Cottaar, Michiel",
"orcid": "0000-0003-4679-7724"
},
{
"affiliation": "MIT, HMS",
"name": "Ghosh, Satrajit",
"orcid": "0000-0002-5312-6729"
},
{
"affiliation": "University of Washington: Seattle, WA, United States",
"name": "Larson, Eric",
"orcid": "0000-0003-4782-5360"
},
{
"affiliation": "MIT, HMS",
"name": "Ghosh, Satrajit",
"orcid": "0000-0002-5312-6729"
},
{
"affiliation": "Athena EPI, Inria Sophia-Antipolis",
"name": "Wassermann, Demian",
Expand Down Expand Up @@ -95,6 +95,9 @@
{
"name": "Duek, Or"
},
{
"name": "Daniel, Jonathan"
},
{
"affiliation": "The University of Washington eScience Institute",
"name": "Rokem, Ariel",
Expand All @@ -104,10 +107,10 @@
"name": "Madison, Cindee"
},
{
"name": "Morency, F\u00e9lix C."
"name": "Moloney, Brendan"
},
{
"name": "Moloney, Brendan"
"name": "Morency, F\u00e9lix C."
},
{
"affiliation": "MIT",
Expand Down Expand Up @@ -167,6 +170,9 @@
"name": "Raamana, Pradeep Reddy",
"orcid": "0000-0003-4662-0558"
},
{
"name": "Klug, Julian"
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@JulianKlug I've added you to the Zenodo fragment, and you will be listed as an author in the Zenodo archive. Please let me know if you would like your name to be rendered otherwise, or if you have an affiliation and/or ORCID you would to use. I can also remove you if you'd rather not be listed as an author.

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sorry for the late reply, below my affiliation details
ORCID: 0000-0002-4849-9811
affiliation: University of Geneva, Switzerland

},
{
"affiliation": "SRI International",
"name": "Nichols, B. Nolan",
Expand Down Expand Up @@ -195,6 +201,11 @@
{
"name": "Koudoro, Serge"
},
{
"affiliation": "University College London",
"name": "P\u00e9rez-Garc\u00eda, Fernando",
"orcid": "0000-0001-9090-3024"
},
{
"name": "Oosterhof, Nikolaas N."
},
Expand Down Expand Up @@ -282,16 +293,14 @@
"name": "Thirion, Bertrand",
"orcid": "0000-0001-5018-7895"
},
{
"name": "Gauthier, Carl"
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@krallznut I've added you to the Zenodo fragment, and you will be listed as an author in the Zenodo archive. Please let me know if you would like your name to be rendered otherwise, or if you have an affiliation and/or ORCID you would to use. I can also remove you if you'd rather not be listed as an author.

},
{
"affiliation": "CEA",
"name": "Papadopoulos Orfanos, Dimitri",
"orcid": "0000-0002-1242-8990"
},
{
"affiliation": "University College London",
"name": "P\u00e9rez-Garc\u00eda, Fernando",
"orcid": "0000-0001-9090-3024"
},
{
"name": "Solovey, Igor"
},
Expand All @@ -315,6 +324,9 @@
"affiliation": "National Technical University of Athens, Greece",
"name": "Raktivan, Konstantinos"
},
{
"name": "Cal\u00e1bkov\u00e1, Mark\u00e9ta"
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@MeggyCal I've added you to the Zenodo fragment, and you will be listed as an author in the Zenodo archive. Please let me know if you would like your name to be rendered otherwise, or if you have an affiliation and/or ORCID you would to use. I can also remove you if you'd rather not be listed as an author.

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thanks a lot, I am honoured :) it is good as it is, thank you for messing up with unicode characters :)

},
{
"affiliation": "Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg, Erlangen, Germany",
"name": "Fischer, Peter",
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54 changes: 54 additions & 0 deletions Changelog
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Expand Up @@ -25,6 +25,60 @@ Eric Larson (EL), Demian Wassermann, Stephan Gerhard and Ross Markello (RM).

References like "pr/298" refer to github pull request numbers.

3.2.0 (Tuesday 20 October 2020)
==============================

New feature release in the 3.2.x series.

New features
------------
* ``nib-stats`` CLI tool to expose new ``nibabel.imagestats`` API. Initial
implementation of volume calculations, a la ``fslstats -V``. (Julian Klug,
reviewed by CM and GitHub user 0rC0)
* ``nib-roi`` CLI tool to crop images and/or flip axes (pr/947) (CM, reviewed
by Chris Cheng and Mathias Goncalves)
* Parser for Siemens "ASCCONV" text format (pr/896) (Brendan Moloney and MB,
reviewed by CM)

Enhancements
------------
* Drop confusing mention of ``img.to_filename()`` in getting started guide
(pr/946) (Fernando Pérez-Garcia, reviewed by MB, CM)
* Implement ``to_bytes()``/``from_bytes()`` methods for ``Cifti2Image``
(pr/938) (CM, reviewed by Mathias Goncalves)
* Clean up of DICOM documentation (pr/910) (Jonathan Daniel, reviewed by MB)

Bug fixes
---------
* Use canvas manager API to set title in ``OrthoSlicer3D`` (pr/958) (EL,
reviewed by CM)
* Record units as seconds parrec2nii; previously set TR to seconds but
retained msec units (pr/931) (CM, reviewed by MB)
* Reflect on-disk dimensions in NIfTI-2 view of CIFTI-2 images (pr/930)
(Mathias Goncalves and CM)
* Fix outdated Python 2 and Sympy code in DICOM derivations (pr/911) (MB,
reviewed by CM)
* Change string with invalid escape to raw string (pr/909) (EL, reviewed
by MB)

Maintenance
-----------
* Fix typo in docs (pr/955) (Carl Gauthier, reviewed by CM)
* Purge nose from nisext tests (pr/934) (Markéta Calábková, reviewed by CM)
* Suppress expected warnings in tests (pr/949) (CM, reviewed by Dorota
Jarecka)
* Various cleanups and modernizations (pr/916, pr/917, pr/918, pr/919)
(Jonathan Daniel, reviewed by CM)
* SVG logo for improved appearance in with zooming (pr/914) (Jonathan Daniel,
reviewed by CM)

API changes and deprecations
----------------------------
* Drop support for Numpy < 1.13 (pr/922) (CM)
* Warn on use of ``onetime.setattr_on_read``, which has been a deprecated
alias of ``auto_attr`` (pr/948) (CM, reviewed by Ariel Rokem)


3.1.1 (Friday 26 June 2020)
===========================

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4 changes: 4 additions & 0 deletions doc/source/index.rst
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Expand Up @@ -110,6 +110,10 @@ contributed code and discussion (in rough order of appearance):
* Roberto Guidotti
* Or Duek
* Anibal Sólon
* Jonathan Daniel
* Markéta Calábková
* Carl Gauthier
* Julian Klug

License reprise
===============
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2 changes: 1 addition & 1 deletion doc/source/installation.rst
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Expand Up @@ -84,7 +84,7 @@ Requirements
.. check these against setup.cfg

* Python_ 3.6 or greater
* NumPy_ 1.13 or greater
* NumPy_ 1.14 or greater
* Packaging_ 14.3 or greater
* SciPy_ (optional, for full SPM-ANALYZE support)
* h5py_ (optional, for MINC2 support)
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