Fix Duplicate and Incorrect Rule IDs

[jsinglet]

Description

Fixes duplicate and incorrect rule ids.

Change request type

• Release or process automation (GitHub workflows, internal scripts)
• Internal documentation
• External documentation
• Query files (.ql, .qll, .qls or unit tests)
• External scripts (analysis report or other code shipped as part of a release)

Rules with added or modified queries

• No rules added
• Queries have been added for the following rules:
  • rule number here
• Queries have been modified for the following rules:
  • DIR/RULE-4-4
  • DIR/RULE-4-8
  • DIR/RULE-4-10
  • DIR/RULE-4-12

Release change checklist

A change note (development_handbook.md#change-notes) is required for any pull request which modifies:

• The structure or layout of the release artifacts.
• The evaluation performance (memory, execution time) of an existing query.
• The results of an existing query in any circumstance.

If you are only adding new rule queries, a change note is not required.

Author: Is a change note required?

• Yes
• No

Reviewer: Confirm that either a change note is not required or the change note is required and has been added.

• Confirmed

Query development review checklist

For PRs that add new queries or modify existing queries, the following checklist should be completed by both the author and reviewer:

Author

• Have all the relevant rule package description files been checked in?
• Have you verified that the metadata properties of each new query is set appropriately?
• Do all the unit tests contain both "COMPLIANT" and "NON_COMPLIANT" cases?
• Are the alert messages properly formatted and consistent with the style guide?
• Have you run the queries on OpenPilot and verified that the performance and results are acceptable?
  As a rule of thumb, predicates specific to the query should take no more than 1 minute, and for simple queries be under 10 seconds. If this is not the case, this should be highlighted and agreed in the code review process.
• Does the query have an appropriate level of in-query comments/documentation?
• Have you considered/identified possible edge cases?
• Does the query not reinvent features in the standard library?
• Can the query be simplified further (not golfed!)

Reviewer

• Have all the relevant rule package description files been checked in?
• Have you verified that the metadata properties of each new query is set appropriately?
• Do all the unit tests contain both "COMPLIANT" and "NON_COMPLIANT" cases?
• Are the alert messages properly formatted and consistent with the style guide?
• Have you run the queries on OpenPilot and verified that the performance and results are acceptable?
  As a rule of thumb, predicates specific to the query should take no more than 1 minute, and for simple queries be under 10 seconds. If this is not the case, this should be highlighted and agreed in the code review process.
• Does the query have an appropriate level of in-query comments/documentation?
• Have you considered/identified possible edge cases?
• Does the query not reinvent features in the standard library?
• Can the query be simplified further (not golfed!)

[knewbury01]

@jsinglet I think this PR will be deprecated when the Language2 tests go through
https://github.com/github/codeql-coding-standards/pull/112/files#diff-cdb9077faf1b88ec6d03150af6359fa4acc5d204ad16528b20342d5a3f93fc66R603

sorry only just pushed those rules.csv file changes... !

[lcartey]

@jsinglet @knewbury01 let's fix all the instances at once, ideally in main (i.e. this PR). Every line from 602 to 618 should be a DIR instead of a rule.

[jsinglet]

Thanks @knewbury01 -- this PR also includes a script that will automatically check for violations in the future.

[lcartey]

We'll need to move the existing queries which should have been DIR queries and update query IDs. This will also need a change note.