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Cleanup #23

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Merged
merged 5 commits into from
Nov 10, 2021
Merged

Cleanup #23

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844eeab
Bump CASE-Examples-QC pointer
ajnelson-nist Nov 10, 2021
12b26b8
Clean whitespace
ajnelson-nist Nov 10, 2021
d360c7b
Sort imports
ajnelson-nist Nov 10, 2021
b393a37
Use one rdf-toolkit.jar
ajnelson-nist Nov 10, 2021
edeff21
Reduce Python 3 detection
ajnelson-nist Nov 10, 2021
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5 changes: 3 additions & 2 deletions Makefile
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Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@

SHELL := /bin/bash

PYTHON3 ?= $(shell which python3.9 2>/dev/null || which python3.8 2>/dev/null || which python3.7 2>/dev/null || which python3.6 2>/dev/null || which python3)
PYTHON3 ?= python3

case_version := $(shell $(PYTHON3) case_utils/ontology/version_info.py)
ifeq ($(case_version),)
Expand All @@ -37,7 +37,8 @@ all: \
# Build an ontology terms list, which has a side effect of initiating further submodules.
$(MAKE) \
--directory dependencies/CASE-Examples-QC \
download
.git_submodule_init.done.log \
.venv.done.log
$(MAKE) \
--directory dependencies/CASE-Examples-QC/tests \
ontology_vocabulary.txt
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2 changes: 1 addition & 1 deletion case_utils/case_sparql_select/__init__.py
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Expand Up @@ -30,8 +30,8 @@

import argparse
import binascii
import os
import logging
import os

import pandas as pd # type: ignore
import rdflib.plugins.sparql # type: ignore
Expand Down
2 changes: 1 addition & 1 deletion dependencies/CASE-Examples-QC
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Submodule CASE-Examples-QC updated 16 files
+1 −1 dependencies/CASE-Examples
+1 −1 dependencies/casework.github.io
+1 −1 tests/CASE-Examples/examples/illustrations/Oresteia/used_concepts.txt
+2 −2 tests/CASE-Examples/examples/illustrations/README.md
+1 −1 tests/CASE-Examples/examples/illustrations/accounts/used_concepts.txt
+0 −1 tests/CASE-Examples/examples/illustrations/file/undefined_concepts.txt
+0 −1 tests/CASE-Examples/examples/illustrations/file/used_concepts.txt
+1 −0 tests/CASE-Examples/examples/illustrations/reconstructed_file/used_concepts.txt
+0 −1 tests/CASE-Examples/examples/illustrations/undefined_concepts.txt
+1 −2 tests/CASE-Examples/examples/illustrations/used_concepts.txt
+2 −2 tests/CASE-Examples/examples/illustrations/wc_l_undefined_concepts.txt
+2 −1 tests/casework.github.io/examples/owl_trafficking/used_concepts.txt
+2 −1 tests/casework.github.io/examples/urgent_evidence/used_concepts.txt
+3 −1 tests/casework.github.io/examples/used_concepts.txt
+0 −1 tests/undefined_concepts.txt
+3 −2 tests/used_concepts.txt
3 changes: 1 addition & 2 deletions tests/Makefile
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Expand Up @@ -15,7 +15,7 @@ SHELL := /bin/bash

top_srcdir := $(shell cd .. ; pwd)

PYTHON3 ?= $(shell which python3.9 2>/dev/null || which python3.8 2>/dev/null || which python3.7 2>/dev/null || which python3.6 2>/dev/null || which python3)
PYTHON3 ?= python3

all: \
all-case_utils
Expand Down Expand Up @@ -52,7 +52,6 @@ all: \
.
touch $@


all-case_utils: \
.venv.done.log
$(MAKE) \
Expand Down
4 changes: 3 additions & 1 deletion tests/case_utils/case_file/Makefile
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Expand Up @@ -17,9 +17,11 @@ top_srcdir := $(shell cd ../../.. ; pwd)

tests_srcdir := $(top_srcdir)/tests

case_srcdir := $(top_srcdir)/dependencies/CASE

qc_srcdir := $(top_srcdir)/dependencies/CASE-Examples-QC

RDF_TOOLKIT_JAR := $(qc_srcdir)/dependencies/CASE-Examples/dependencies/CASE-0.3.0/CASE/lib/rdf-toolkit.jar
RDF_TOOLKIT_JAR := $(case_srcdir)/lib/rdf-toolkit.jar

COMM ?= $(shell which gcomm 2>/dev/null || which comm)
ifeq ($(COMM),)
Expand Down