arduino-cli daemon issues on Arch Linux

[groowyCZ]

Describe the bug
IDE isn't able to connect to the CLI daemon.

To Reproduce
Open Arduino Pro IDE

Expected behavior
Arduino Pro IDE connects to CLI daemon

Log

groowy@asus ~> /opt/arduino-pro-ide/Arduino\ Pro\ IDE-v0.0.6-linux-x64/arduino-pro-ide
root WARN please install @theia/electron@0.17.0-next.f5433ece as a runtime dependency
root WARN The directory referenced by local-dir:/home/groowy/.arduinoProIDE/plugins does not exist.
root WARN The directory referenced by local-dir:/home/groowy/.arduinoProIDE/extensions does not exist.
root WARN The directory referenced by local-dir:/home/groowy/.arduinoProIDE/plugins does not exist.
root INFO Configuring to accept webviews on '.+.webview..+' hostname.
root INFO Theia app listening on http://localhost:37437.
root INFO PluginTheiaDirectoryHandler: accepting plugin with path /opt/arduino-pro-ide/Arduino Pro IDE-v0.0.6-linux-x64/resources/app/plugins/vscode-yaml
root INFO Resolved "vscode-yaml" to a VS Code extension "vscode-yaml@0.7.2" with engines: { vscode: '^1.31.0' }
config INFO Started watching the Arduino CLI configuration: '/home/groowy/.arduinoProIDE/arduino-cli.yaml'.
root INFO Deploying backend plugin "vscode-yaml@0.7.2" from "/opt/arduino-pro-ide/Arduino Pro IDE-v0.0.6-linux-x64/resources/app/plugins/vscode-yaml/extension/out/src/extension"
root INFO Deploy plugins list took: 34.3 ms
root WARN Backend ConfigServiceImpl.onStart is slow, took: 71.5 ms
daemon INFO Starting daemon from /usr/bin/arduino-cli...
daemon INFO Using config file: /home/groowy/.arduinoProIDE/arduino-cli.yaml
daemon INFO arduino-cli version 0.12.0-arch
daemon INFO Setting up Prometheus telemetry on :9090/metrics
daemon INFO Starting daemon on TCP address 127.0.0.1:50051
daemon INFO Daemon is now listening on 127.0.0.1:50051...
root INFO Git askpass helper is listening on http://127.0.0.1:42913.
root INFO Using Git [2.28.0] from the PATH. (/usr/bin/git)
root WARN Failed to resolve module: @types/body-parser
root WARN Failed to resolve module: @types/cookie
root WARN Failed to resolve module: @types/express
root WARN Failed to resolve module: @types/fs-extra
root WARN Failed to resolve module: @types/lodash.debounce
root WARN Failed to resolve module: @types/lodash.throttle
root WARN Failed to resolve module: @types/react
root WARN Failed to resolve module: @types/react-dom
root WARN Failed to resolve module: @types/react-virtualized
root WARN Failed to resolve module: @types/route-parser
root WARN Failed to resolve module: @types/ws
root WARN Failed to resolve module: @types/yargs
root WARN Failed to resolve module: @theia/editor
root WARN Failed to resolve module: @types/rimraf
root WARN Failed to resolve module: @types/tar-fs
root WARN Failed to resolve module: @types/touch
root WARN Failed to resolve module: @types/uuid
root WARN Failed to resolve module: @typefox/monaco-editor-core
root WARN Failed to resolve module: @theia/monaco
root WARN Failed to resolve module: @theia/preferences
root WARN Failed to resolve module: @theia/navigator
root WARN Failed to resolve module: @types/p-debounce
root WARN Failed to resolve module: @theia/electron
root WARN Failed to resolve module: @theia/messages
root WARN Failed to resolve module: @types/diff
root WARN Failed to resolve module: @types/connect
root WARN Failed to resolve module: @types/mime
root WARN Failed to resolve module: @types/serve-static
root WARN Failed to resolve module: @types/request
root WARN Failed to resolve module: @types/p-queue
root WARN Failed to resolve module: @types/dateformat
root WARN Failed to resolve module: @types/deepmerge
root WARN Failed to resolve module: @types/glob
root WARN Failed to resolve module: @types/google-protobuf
root WARN Failed to resolve module: @types/js-yaml
root WARN Failed to resolve module: @types/ps-tree
root WARN Failed to resolve module: @types/react-select
root WARN Failed to resolve module: @types/sinon
root WARN Failed to resolve module: @types/which
root WARN Collided keybinding is ignored;  {"command":"actions.find","keybinding":"ctrl+f","when":null}  collided with  {"command":"core.find","keybinding":"ctrlcmd+f"}
root WARN Could not register keybinding:
  {"command":"actions.find","keybinding":"ctrl+f","when":null}
Error: "ctrl+f" is in collision with something else [scope:0]
root WARN Collided keybinding is ignored;  {"command":"passthrough","keybinding":"ctrl+f","context":"terminalActive"}  collided with  {"command":"terminal:find","keybinding":"ctrlcmd+f","context":"terminalActive"}
root WARN Could not register keybinding:
  {"command":"passthrough","keybinding":"ctrl+f","context":"terminalActive"}
Error: "ctrl+f" is in collision with something else [scope:0]
root WARN Collided keybinding is ignored;  {"command":"passthrough","keybinding":"ctrl+k","context":"terminalActive"}  collided with  {"command":"terminal:clear","keybinding":"ctrlcmd+k","context":"terminalActive"}
root WARN Could not register keybinding:
  {"command":"passthrough","keybinding":"ctrl+k","context":"terminalActive"}
Error: "ctrl+k" is in collision with something else [scope:0]
root WARN Collided keybinding is ignored;  {"command":"library-list-widget:toggle","keybinding":"ctrlcmd+shift+l"}  collided with  {"command":"pluginsView:toggle","keybinding":"ctrlcmd+shift+l"}
root WARN Could not register keybinding:
  {"command":"library-list-widget:toggle","keybinding":"ctrlcmd+shift+l"}
Error: "ctrlcmd+shift+l" is in collision with something else [scope:0]
root WARN Frontend keybindings.onStart is slow, took: 435.5 ms
root INFO [nsfw-watcher: 42210] Started watching: /home/groowy/.arduinoProIDE
root INFO [nsfw-watcher: 42210] Started watching: /home/groowy/Arduino/IR_test
root INFO [nsfw-watcher: 42210] Started watching: /home/groowy/Arduino/IR_test
root INFO Board config changed:  {"selectedBoard":{"name":"Arduino Nano","fqbn":"arduino:avr:nano","packageName":"Arduino AVR Boards","selected":false,"missing":false},"selectedPort":{"protocol":"serial","address":"/dev/ttyUSB3"}}
root INFO Board config changed:  {"selectedBoard":{"name":"Arduino Nano","fqbn":"arduino:avr:nano","packageName":"Arduino AVR Boards","selected":false,"missing":false}}
root INFO Changed application state from 'init' to 'started_contributions'.
root INFO Changed application state from 'started_contributions' to 'attached_shell'.
root INFO >>> Restoring the layout state...
root INFO [873a2110-de56-4e5f-b683-7becb7a283ba] Sync of 1 plugin took: 341.7 ms
root INFO [nsfw-watcher: 42210] Started watching: /home/groowy/Arduino/IR_test/.theia/settings.json
root INFO [nsfw-watcher: 42210] Started watching: /home/groowy/Arduino/IR_test/IR_test.ino
root INFO [hosted-plugin: 42252] PLUGIN_HOST(42252) starting instance
root INFO <<< The layout has been successfully restored.
root INFO Changed application state from 'attached_shell' to 'initialized_layout'.
root INFO [873a2110-de56-4e5f-b683-7becb7a283ba][redhat.vscode-yaml]: Loaded contributions.
root INFO [873a2110-de56-4e5f-b683-7becb7a283ba] Load contributions of 1 plugin took: 32.3 ms
root INFO Starting language server /opt/arduino-pro-ide/Arduino Pro IDE-v0.0.6-linux-x64/resources/app/node_modules/arduino-ide-extension/build/arduino-language-server -clangd /opt/arduino-pro-ide/Arduino Pro IDE-v0.0.6-linux-x64/resources/app/node_modules/arduino-ide-extension/build/bin/clangd -cli /usr/bin/arduino-cli -fqbn arduino:avr:nano -board-name "Arduino Nano"
root INFO [hosted-plugin: 42252] PLUGIN_HOST(42252): PluginManagerExtImpl/init()
root INFO [hosted-plugin: 42252] PLUGIN_HOST(42252): initializing(vscode-yaml@0.7.2 with /opt/arduino-pro-ide/Arduino Pro IDE-v0.0.6-linux-x64/resources/app/node_modules/@theia/plugin-ext-vscode/lib/node/plugin-vscode-init.js)
root INFO [873a2110-de56-4e5f-b683-7becb7a283ba][redhat.vscode-yaml]: Started plugin.
root INFO [873a2110-de56-4e5f-b683-7becb7a283ba] Start of 1 plugin took: 537.1 ms
root INFO [873a2110-de56-4e5f-b683-7becb7a283ba] Sync of 0 plugins took: 2.4 ms
root INFO [873a2110-de56-4e5f-b683-7becb7a283ba] Load contributions of 0 plugins took: 0.1 ms
root INFO [873a2110-de56-4e5f-b683-7becb7a283ba] Start of 0 plugins took: 8.3 ms
root ERROR Arduino: 2020/09/01 18:12:35 Command error: /usr/bin/arduino-cli exit status 1
2020/09/01 18:12:35 ------------------------------BEGIN STDERR
 Error during build: unable to find a sketch file in directory /tmp/ino2cpp-686848847
 ------------------------------END STDERR

root INFO Changed application state from 'initialized_layout' to 'ready'.

Desktop (please complete the following information):

• OS: Arch Linux
• Kernel version: 5.8.5-arch1-1

Additional context
I tried completely reinstalling the Arduino Pro IDE from the AUR provided by yay (arduino-pro-ide version 0.0.6-1) which didn't result in any change of behavior and I'm suspecting that the daemon is stopped by the error listed in the log but I'm not sure what is causing it because when I list the directory /tmp/ino2cpp-686848847 it returns IR_test.ino IR_test.ino.cpp which leads me to believe that the arduino-cli wants to access the files before they are created. Feel free to correct me because I don't have any idea what's going on and more importantly why is it going on.

[kittaakos]

I do not see any daemon-related errors in the logs. Can you please try with the latest release? Thank you!

[Master811129]

@kittaakos I have this problem too but on ubuntu distro in 0.1.1 version.
The output of the terminal:

[kittaakos]

@Master811129, thanks for the heads-up; it seems you have a different issue. Please try to change the execution rights of the bundled CLI with:

chmod +x /path/to/your/arduino-pro-ide/resources/app/node_modules/arduino-ide-extension/build/arduino-cli

Let us know how it went.

[kittaakos]

@groowyCZ, I am sure the problem is that you're are using the previous version of the IDE and a newer version of the CLI from your $PATH.

From #326 (comment):

root WARN Backend ConfigServiceImpl.onStart is slow, took: 71.5 ms
daemon INFO Starting daemon from /usr/bin/arduino-cli...
daemon INFO Using config file: /home/groowy/.arduinoProIDE/arduino-cli.yaml

They're incompatible with each other; the gRPC APIs can still change. We removed the CLI support from the $PATH. More info about this is here and here. Please get the latest version and try it. Thanks!

[Master811129]

@Master811129, thanks for the heads-up; it seems you have a different issue. Please try to change the execution rights of the bundled CLI with:

chmod +x /path/to/your/arduino-pro-ide/resources/app/node_modules/arduino-ide-extension/build/arduino-cli

Let us know how it went.

Thank you now it can run the daemon
but with this errors:

[kittaakos]

Thank you now it can run the daemon

Thanks for the update! How did you unpack the zip? I have to check whether we lost the execution rights on Linux.

[Master811129]

Thank you now it can run the daemon

Thanks for the update! How did you unpack the zip? I have to check whether we lost the execution rights on Linux.

i unpacked it with the Archive Manager(default app) and also Winrar (using wine) but I saw the same behavior.

[Master811129]

@Master811129, thanks for the heads-up; it seems you have a different issue. Please try to change the execution rights of the bundled CLI with:

chmod +x /path/to/your/arduino-pro-ide/resources/app/node_modules/arduino-ide-extension/build/arduino-cli

Let us know how it went.

Thank you now it can run the daemon
but with this errors:

@kittaakos could you please tell me how can i fix that issues.

[kittaakos]

could you please tell me how can i fix that issues.

I think this problem is the same as #213 (comment).
Please use a terminal to unzip the IDe. Otherwise, the symlinks are not preserved.

Let us know if it did not help.

[kittaakos]

i unpacked it with the Archive Manager(default app) and also Winrar (using wine) but I saw the same behavior.

I have checked the execution rights, and they seem correct.

kittaakos@ubuntu:~/Downloads$ ls -al
total 208748
drwxr-xr-x  2 kittaakos kittaakos      4096 Sep  7 02:18 .
drwxr-xr-x 26 kittaakos kittaakos      4096 Sep  7 02:17 ..
-rw-rw-r--  1 kittaakos kittaakos 213743252 Sep  7 02:18 arduino-pro-ide_nightly-20200907_Linux_64bit.zip
kittaakos@ubuntu:~/Downloads$ unzip -qq arduino-pro-ide_nightly-20200907_Linux_64bit.zip 
kittaakos@ubuntu:~/Downloads$ ./arduino-pro-ide_nightly-20200907_Linux_64bit/arduino-pro-ide 
MESA-LOADER: failed to retrieve device information
MESA-LOADER: failed to retrieve device information
MESA-LOADER: failed to retrieve device information
root WARN please install @theia/electron@1.5.0-next.09ef844b as a runtime dependency
root INFO Configuration directory URI: 'file:///home/kittaakos/.theia'
root INFO Configuring to accept webviews on '.+.webview..+' hostname.
root WARN The directory referenced by local-dir:/home/kittaakos/.arduinoProIDE/plugins does not exist.
root WARN The directory referenced by local-dir:/home/kittaakos/.arduinoProIDE/extensions does not exist.
root WARN The directory referenced by local-dir:/home/kittaakos/.arduinoProIDE/plugins does not exist.
root INFO Theia app listening on http://localhost:37253.
config INFO Started watching the Arduino CLI configuration: '/home/kittaakos/.arduinoProIDE/arduino-cli.yaml'.
root INFO PluginTheiaDirectoryHandler: accepting plugin with path /home/kittaakos/Downloads/arduino-pro-ide_nightly-20200907_Linux_64bit/resources/app/plugins/vscode-builtin-cpp
root INFO Resolved "vscode-builtin-cpp" to a VS Code extension "cpp@1.44.2" with engines: { vscode: '*' }
root INFO Deploying backend plugin "cpp@1.44.2" from "/home/kittaakos/Downloads/arduino-pro-ide_nightly-20200907_Linux_64bit/resources/app/plugins/vscode-builtin-cpp/extension"
root INFO Deploy plugins list took: 111.5 ms
root WARN Backend ConfigServiceImpl.onStart is slow, took: 135.9 ms
daemon INFO Starting daemon from /home/kittaakos/Downloads/arduino-pro-ide_nightly-20200907_Linux_64bit/resources/app/node_modules/arduino-ide-extension/build/arduino-cli...
daemon INFO Using config file: /home/kittaakos/.arduinoProIDE/arduino-cli.yaml
daemon INFO arduino-cli version 0.12.1
daemon INFO Setting up Prometheus telemetry on :9090/metrics
daemon INFO Starting daemon on TCP address 127.0.0.1:50051
daemon INFO Daemon is now listening on 127.0.0.1:50051...
daemon INFO Daemon is running.
root INFO Git askpass helper is listening on http://127.0.0.1:42965.
root INFO Using Git [2.17.1] from the PATH. (/usr/bin/git)
daemon INFO Checking signature [index: /home/kittaakos/.arduino15/package_index.json, signaturefile: /home/kittaakos/.arduino15/package_index.json.sig, trusted: true]
daemon INFO Checking if CLI is Bundled into the IDE
daemon INFO Loading hardware from: /home/kittaakos/.arduino15/packages
daemon INFO Loading package arduino from: /home/kittaakos/.arduino15/packages/arduino/hardware
daemon INFO Loaded platform [platform: {ID:"arduino:avr",Installed:"1.8.3",Latest:"1.8.3",Name:"Arduino AVR Boards"}]
daemon INFO Checking existence of 'tools' path: /home/kittaakos/.arduino15/packages/arduino/tools
daemon INFO Loading tools from dir: /home/kittaakos/.arduino15/packages/arduino/tools
daemon INFO Loaded tool [tool: Version: 1.3.0 Systems: [OS: i686-linux-gnu, OS: x86_64-linux-gnu, OS: arm-linux-gnueabihf, OS: aarch64-linux-gnu, OS: i386-apple-darwin11, OS: i686-mingw32]]
daemon INFO Loaded tool [tool: Version: 7-2017q4 Systems: [OS: arm-linux-gnueabihf, OS: aarch64-linux-gnu, OS: i686-mingw32, OS: x86_64-apple-darwin, OS: x86_64-pc-linux-gnu, OS: i686-pc-linux-gnu]]
daemon INFO Loaded tool [tool: Version: 7.3.0-atmel3.6.1-arduino7 Systems: [OS: arm-linux-gnueabihf, OS: aarch64-linux-gnu, OS: x86_64-apple-darwin14, OS: i686-mingw32, OS: i686-linux-gnu, OS: x86_64-linux-gnu]]
daemon INFO Loaded tool [tool: Version: 6.3.0-arduino17 Systems: [OS: arm-linux-gnueabihf, OS: aarch64-linux-gnu, OS: x86_64-apple-darwin12, OS: x86_64-linux-gnu, OS: i686-linux-gnu, OS: i686-mingw32]]
daemon INFO Loaded tool [tool: Version: 1.9.1-arduino1 Systems: [OS: i686-mingw32, OS: x86_64-apple-darwin, OS: x86_64-pc-linux-gnu, OS: i686-pc-linux-gnu, OS: arm-linux-gnueabihf, OS: aarch64-linux-gnu]]
daemon INFO Loaded tool [tool: Version: 0.9.0-arduino2 Systems: [OS: i386-apple-darwin11, OS: arm-linux-gnueabihf, OS: x86_64-linux-gnu, OS: i686-linux-gnu, OS: i686-mingw32]]
daemon INFO Loaded tool [tool: Version: 0.10.0-arduino13 Systems: [OS: aarch64-linux-gnu, OS: arm-linux-gnueabihf, OS: i686-linux-gnu, OS: i686-mingw32, OS: i386-apple-darwin11, OS: x86_64-linux-gnu]]
daemon INFO Loading package arduino-beta from: /home/kittaakos/.arduino15/packages/arduino-beta/hardware
daemon INFO Loaded platform [platform: {ID:"arduino-beta:mbed",Installed:"1.2.2",Latest:"1.2.2",Name:"Arduino mbed-enabled Boards"}]
daemon INFO Loading package builtin from: /home/kittaakos/.arduino15/packages/builtin
daemon INFO Checking existence of 'tools' path: /home/kittaakos/.arduino15/packages/builtin/tools
daemon INFO Loading tools from dir: /home/kittaakos/.arduino15/packages/builtin/tools
daemon INFO Loaded tool [tool: Version: 5.8-arduino11]
daemon INFO Loaded tool [tool: Version: 1.0.0]
daemon INFO Adding libraries dir [dir: /home/kittaakos/Arduino/libraries, location: user]
daemon INFO Adding libraries dir [dir: /home/kittaakos/.arduino15/packages/arduino-beta/hardware/mbed/1.2.2/libraries, location: platform]
daemon INFO Adding libraries dir [dir: /home/kittaakos/.arduino15/packages/arduino/hardware/avr/1.8.3/libraries, location: platform]
root WARN Failed to resolve module: @types/body-parser
root WARN Failed to resolve module: @types/cookie
root WARN Failed to resolve module: @types/express
root WARN Failed to resolve module: @types/fs-extra
root WARN Failed to resolve module: @types/lodash.debounce
root WARN Failed to resolve module: @types/lodash.throttle
root WARN Failed to resolve module: @types/react
root WARN Failed to resolve module: @types/react-dom
root WARN Failed to resolve module: @types/react-virtualized
root WARN Failed to resolve module: @types/route-parser
root WARN Failed to resolve module: @types/ws
root WARN Failed to resolve module: @types/yargs
root WARN Failed to resolve module: @theia/monaco
root WARN Failed to resolve module: @theia/editor
root WARN Failed to resolve module: @types/rimraf
root WARN Failed to resolve module: @types/tar-fs
root WARN Failed to resolve module: @types/touch
root WARN Failed to resolve module: @types/uuid
root WARN Failed to resolve module: @theia/navigator
root WARN Failed to resolve module: @types/p-queue
root WARN Failed to resolve module: @theia/preferences
root WARN Failed to resolve module: @theia/electron
root WARN Failed to resolve module: @theia/messages
root WARN Failed to resolve module: @types/diff
root WARN Failed to resolve module: @types/connect
root WARN Failed to resolve module: @types/mime
root WARN Failed to resolve module: @types/serve-static
root WARN Failed to resolve module: @types/request
root WARN Failed to resolve module: @types/dateformat
root WARN Failed to resolve module: @types/deepmerge
root WARN Failed to resolve module: @types/glob
root WARN Failed to resolve module: @types/google-protobuf
root WARN Failed to resolve module: @types/js-yaml
root WARN Failed to resolve module: @types/ncp
root WARN Failed to resolve module: @types/ps-tree
root WARN Failed to resolve module: @types/react-select
root WARN Failed to resolve module: @types/sinon
root WARN Failed to resolve module: @types/temp
root WARN Failed to resolve module: @types/which
root WARN Failed to resolve module: temp
discovery INFO Initialized attached boards and available ports. - Discovered boards: [] and available ports: []
root INFO The CLI daemon process has started.
root WARN Frontend keybindings.onStart is slow, took: 543.8 ms
root WARN Frontend WorkspaceService.onStart is slow, took: 268.1 ms
root INFO Attached boards and available ports changed:  {"oldState":{"boards":[],"ports":[]},"newState":{"boards":[],"ports":[]}}
root INFO [nsfw-watcher: 2421] Started watching: /tmp/.arduinoProIDE-unsaved202087-2350-1c747wr.m6cd/sketch_sep7a
root INFO [nsfw-watcher: 2421] Started watching: /tmp/.arduinoProIDE-unsaved202087-2350-1c747wr.m6cd/sketch_sep7a
root WARN Frontend EditorNavigationContribution.onStart is slow, took: 419.2 ms
root INFO Changed application state from 'init' to 'started_contributions'.
daemon INFO Updating index [url: https://downloads.arduino.cc/packages/package_index.json]
root INFO Changed application state from 'started_contributions' to 'attached_shell'.
root INFO >>> Restoring the layout state...
root INFO <<< Nothing to restore.
root INFO [nsfw-watcher: 2421] Started watching: /home/kittaakos/.arduinoProIDE
root INFO Changed application state from 'attached_shell' to 'initialized_layout'.
daemon INFO Checking signature [error: opening signature file: open /tmp/833664799.sig: no such file or directory, index: /tmp/833664799, signaturefile: /tmp/833664799.sig]
daemon INFO Checking signature [index: /home/kittaakos/.arduino15/package_index.json, signaturefile: /home/kittaakos/.arduino15/package_index.json.sig, trusted: true]
daemon INFO Loading hardware from: /home/kittaakos/.arduino15/packages
daemon INFO Loading package arduino from: /home/kittaakos/.arduino15/packages/arduino/hardware
daemon INFO Loaded platform [platform: {ID:"arduino:avr",Installed:"1.8.3",Latest:"1.8.3",Name:"Arduino AVR Boards"}]
daemon INFO Checking existence of 'tools' path: /home/kittaakos/.arduino15/packages/arduino/tools
daemon INFO Loading tools from dir: /home/kittaakos/.arduino15/packages/arduino/tools
daemon INFO Loaded tool [tool: Version: 1.3.0 Systems: [OS: i686-linux-gnu, OS: x86_64-linux-gnu, OS: arm-linux-gnueabihf, OS: aarch64-linux-gnu, OS: i386-apple-darwin11, OS: i686-mingw32]]
daemon INFO Loaded tool [tool: Version: 7-2017q4 Systems: [OS: arm-linux-gnueabihf, OS: aarch64-linux-gnu, OS: i686-mingw32, OS: x86_64-apple-darwin, OS: x86_64-pc-linux-gnu, OS: i686-pc-linux-gnu]]
daemon INFO Loaded tool [tool: Version: 7.3.0-atmel3.6.1-arduino7 Systems: [OS: arm-linux-gnueabihf, OS: aarch64-linux-gnu, OS: x86_64-apple-darwin14, OS: i686-mingw32, OS: i686-linux-gnu, OS: x86_64-linux-gnu]]
daemon INFO Loaded tool [tool: Version: 6.3.0-arduino17 Systems: [OS: arm-linux-gnueabihf, OS: aarch64-linux-gnu, OS: x86_64-apple-darwin12, OS: x86_64-linux-gnu, OS: i686-linux-gnu, OS: i686-mingw32]]
daemon INFO Loaded tool [tool: Version: 1.9.1-arduino1 Systems: [OS: i686-mingw32, OS: x86_64-apple-darwin, OS: x86_64-pc-linux-gnu, OS: i686-pc-linux-gnu, OS: arm-linux-gnueabihf, OS: aarch64-linux-gnu]]
daemon INFO Loaded tool [tool: Version: 0.9.0-arduino2 Systems: [OS: i386-apple-darwin11, OS: arm-linux-gnueabihf, OS: x86_64-linux-gnu, OS: i686-linux-gnu, OS: i686-mingw32]]
daemon INFO Loaded tool [tool: Version: 0.10.0-arduino13 Systems: [OS: aarch64-linux-gnu, OS: arm-linux-gnueabihf, OS: i686-linux-gnu, OS: i686-mingw32, OS: i386-apple-darwin11, OS: x86_64-linux-gnu]]
daemon INFO Loading package arduino-beta from: /home/kittaakos/.arduino15/packages/arduino-beta/hardware
daemon INFO Loaded platform [platform: {ID:"arduino-beta:mbed",Installed:"1.2.2",Latest:"1.2.2",Name:"Arduino mbed-enabled Boards"}]
daemon INFO Loading package builtin from: /home/kittaakos/.arduino15/packages/builtin
daemon INFO Checking existence of 'tools' path: /home/kittaakos/.arduino15/packages/builtin/tools
daemon INFO Loading tools from dir: /home/kittaakos/.arduino15/packages/builtin/tools
daemon INFO Loaded tool [tool: Version: 5.8-arduino11]
daemon INFO Loaded tool [tool: Version: 1.0.0]
daemon INFO Adding libraries dir [dir: /home/kittaakos/Arduino/libraries, location: user]
daemon INFO Adding libraries dir [dir: /home/kittaakos/.arduino15/packages/arduino-beta/hardware/mbed/1.2.2/libraries, location: platform]
daemon INFO Adding libraries dir [dir: /home/kittaakos/.arduino15/packages/arduino/hardware/avr/1.8.3/libraries, location: platform]
root INFO [444f2515-662c-4dde-853b-008364934057] Sync of 1 plugin took: 1194.3 ms
root INFO [444f2515-662c-4dde-853b-008364934057][vscode.cpp]: Loaded contributions.
root INFO [444f2515-662c-4dde-853b-008364934057] Load contributions of 1 plugin took: 42.7 ms
root WARN Error: 'cpp' language is remapped from 'source.cpp.embedded.macro' to 'source.cpp' scope
    at TextmateRegistry.push../node_modules/@theia/monaco/lib/browser/textmate/textmate-registry.js.TextmateRegistry.mapLanguageIdToTextmateGrammar (file:///home/kittaakos/Downloads/arduino-pro-ide_nightly-20200907_Linux_64bit/resources/app/lib/36.bundle.js:1408:26)
    at file:///home/kittaakos/Downloads/arduino-pro-ide_nightly-20200907_Linux_64bit/resources/app/lib/58.bundle.js:8130:125
    at pushContribution (file:///home/kittaakos/Downloads/arduino-pro-ide_nightly-20200907_Linux_64bit/resources/app/lib/58.bundle.js:7988:32)
    at _loop_14 (file:///home/kittaakos/Downloads/arduino-pro-ide_nightly-20200907_Linux_64bit/resources/app/lib/58.bundle.js:8130:21)
    at file:///home/kittaakos/Downloads/arduino-pro-ide_nightly-20200907_Linux_64bit/resources/app/lib/58.bundle.js:8139:25
root WARN Error: a registered grammar configuration for 'cpp' language is overridden
    at TextmateRegistry.push../node_modules/@theia/monaco/lib/browser/textmate/textmate-registry.js.TextmateRegistry.registerGrammarConfiguration (file:///home/kittaakos/Downloads/arduino-pro-ide_nightly-20200907_Linux_64bit/resources/app/lib/36.bundle.js:1446:26)
    at file:///home/kittaakos/Downloads/arduino-pro-ide_nightly-20200907_Linux_64bit/resources/app/lib/58.bundle.js:8131:133
    at pushContribution (file:///home/kittaakos/Downloads/arduino-pro-ide_nightly-20200907_Linux_64bit/resources/app/lib/58.bundle.js:7988:32)
    at _loop_14 (file:///home/kittaakos/Downloads/arduino-pro-ide_nightly-20200907_Linux_64bit/resources/app/lib/58.bundle.js:8131:21)
    at file:///home/kittaakos/Downloads/arduino-pro-ide_nightly-20200907_Linux_64bit/resources/app/lib/58.bundle.js:8139:25
root INFO Changed application state from 'initialized_layout' to 'ready'.
root INFO [nsfw-watcher: 2421] Started watching: /tmp/.arduinoProIDE-unsaved202087-2350-1c747wr.m6cd/sketch_sep7a/sketch_sep7a.ino
root INFO [hosted-plugin: 2461] PLUGIN_HOST(2461) starting instance
root WARN Widget was activated, but did not accept focus after 2000ms: outputView
root INFO Starting language server /home/kittaakos/Downloads/arduino-pro-ide_nightly-20200907_Linux_64bit/resources/app/node_modules/arduino-ide-extension/build/arduino-language-server -clangd /home/kittaakos/Downloads/arduino-pro-ide_nightly-20200907_Linux_64bit/resources/app/node_modules/arduino-ide-extension/build/bin/clangd -cli /home/kittaakos/Downloads/arduino-pro-ide_nightly-20200907_Linux_64bit/resources/app/node_modules/arduino-ide-extension/build/arduino-cli
daemon INFO Updating libraries index
root INFO [hosted-plugin: 2461] PLUGIN_HOST(2461): PluginManagerExtImpl/init()
root INFO [hosted-plugin: 2461] PLUGIN_HOST(2461): initializing(cpp@1.44.2 with /home/kittaakos/Downloads/arduino-pro-ide_nightly-20200907_Linux_64bit/resources/app/node_modules/@theia/plugin-ext-vscode/lib/node/plugin-vscode-init.js)
root INFO [444f2515-662c-4dde-853b-008364934057][vscode.cpp]: Started plugin.
root INFO [444f2515-662c-4dde-853b-008364934057] Start of 1 plugin took: 2114.8 ms
root INFO [444f2515-662c-4dde-853b-008364934057] Sync of 0 plugins took: 59.4 ms
root INFO [444f2515-662c-4dde-853b-008364934057] Load contributions of 0 plugins took: 0.0 ms
root INFO [444f2515-662c-4dde-853b-008364934057] Start of 0 plugins took: 84.4 ms
daemon INFO Checking signature [index: /home/kittaakos/.arduino15/package_index.json, signaturefile: /home/kittaakos/.arduino15/package_index.json.sig, trusted: true]
daemon INFO Loading hardware from: /home/kittaakos/.arduino15/packages
daemon INFO Loading package arduino from: /home/kittaakos/.arduino15/packages/arduino/hardware
daemon INFO Loaded platform [platform: {ID:"arduino:avr",Installed:"1.8.3",Latest:"1.8.3",Name:"Arduino AVR Boards"}]
daemon INFO Checking existence of 'tools' path: /home/kittaakos/.arduino15/packages/arduino/tools
daemon INFO Loading tools from dir: /home/kittaakos/.arduino15/packages/arduino/tools
daemon INFO Loaded tool [tool: Version: 1.3.0 Systems: [OS: i686-linux-gnu, OS: x86_64-linux-gnu, OS: arm-linux-gnueabihf, OS: aarch64-linux-gnu, OS: i386-apple-darwin11, OS: i686-mingw32]]
daemon INFO Loaded tool [tool: Version: 7-2017q4 Systems: [OS: arm-linux-gnueabihf, OS: aarch64-linux-gnu, OS: i686-mingw32, OS: x86_64-apple-darwin, OS: x86_64-pc-linux-gnu, OS: i686-pc-linux-gnu]]
daemon INFO Loaded tool [tool: Version: 7.3.0-atmel3.6.1-arduino7 Systems: [OS: arm-linux-gnueabihf, OS: aarch64-linux-gnu, OS: x86_64-apple-darwin14, OS: i686-mingw32, OS: i686-linux-gnu, OS: x86_64-linux-gnu]]
daemon INFO Loaded tool [tool: Version: 6.3.0-arduino17 Systems: [OS: arm-linux-gnueabihf, OS: aarch64-linux-gnu, OS: x86_64-apple-darwin12, OS: x86_64-linux-gnu, OS: i686-linux-gnu, OS: i686-mingw32]]
daemon INFO Loaded tool [tool: Version: 1.9.1-arduino1 Systems: [OS: i686-mingw32, OS: x86_64-apple-darwin, OS: x86_64-pc-linux-gnu, OS: i686-pc-linux-gnu, OS: arm-linux-gnueabihf, OS: aarch64-linux-gnu]]
daemon INFO Loaded tool [tool: Version: 0.9.0-arduino2 Systems: [OS: i386-apple-darwin11, OS: arm-linux-gnueabihf, OS: x86_64-linux-gnu, OS: i686-linux-gnu, OS: i686-mingw32]]
daemon INFO Loaded tool [tool: Version: 0.10.0-arduino13 Systems: [OS: aarch64-linux-gnu, OS: arm-linux-gnueabihf, OS: i686-linux-gnu, OS: i686-mingw32, OS: i386-apple-darwin11, OS: x86_64-linux-gnu]]
daemon INFO Loading package arduino-beta from: /home/kittaakos/.arduino15/packages/arduino-beta/hardware
daemon INFO Loaded platform [platform: {ID:"arduino-beta:mbed",Installed:"1.2.2",Latest:"1.2.2",Name:"Arduino mbed-enabled Boards"}]
daemon INFO Loading package builtin from: /home/kittaakos/.arduino15/packages/builtin
daemon INFO Checking existence of 'tools' path: /home/kittaakos/.arduino15/packages/builtin/tools
daemon INFO Loading tools from dir: /home/kittaakos/.arduino15/packages/builtin/tools
daemon INFO Loaded tool [tool: Version: 5.8-arduino11]
daemon INFO Loaded tool [tool: Version: 1.0.0]
daemon INFO Adding libraries dir [dir: /home/kittaakos/Arduino/libraries, location: user]
daemon INFO Adding libraries dir [dir: /home/kittaakos/.arduino15/packages/arduino-beta/hardware/mbed/1.2.2/libraries, location: platform]
daemon INFO Adding libraries dir [dir: /home/kittaakos/.arduino15/packages/arduino/hardware/avr/1.8.3/libraries, location: platform]
root INFO Index has been updated.
discovery INFO Updated discovered boards and available ports. - Discovered boards: [] and available ports: [{"protocol":"serial","address":"/dev/ttyS0"},{"protocol":"serial","address":"/dev/ttyS1"},{"protocol":"serial","address":"/dev/ttyS2"},{"protocol":"serial","address":"/dev/ttyS3"},{"protocol":"serial","address":"/dev/ttyS4"},{"protocol":"serial","address":"/dev/ttyS5"},{"protocol":"serial","address":"/dev/ttyS6"},{"protocol":"serial","address":"/dev/ttyS7"},{"protocol":"serial","address":"/dev/ttyS8"},{"protocol":"serial","address":"/dev/ttyS9"},{"protocol":"serial","address":"/dev/ttyS10"},{"protocol":"serial","address":"/dev/ttyS11"},{"protocol":"serial","address":"/dev/ttyS12"},{"protocol":"serial","address":"/dev/ttyS13"},{"protocol":"serial","address":"/dev/ttyS14"},{"protocol":"serial","address":"/dev/ttyS15"},{"protocol":"serial","address":"/dev/ttyS16"},{"protocol":"serial","address":"/dev/ttyS17"},{"protocol":"serial","address":"/dev/ttyS18"},{"protocol":"serial","address":"/dev/ttyS19"},{"protocol":"serial","address":"/dev/ttyS20"},{"protocol":"serial","address":"/dev/ttyS21"},{"protocol":"serial","address":"/dev/ttyS22"},{"protocol":"serial","address":"/dev/ttyS23"},{"protocol":"serial","address":"/dev/ttyS24"},{"protocol":"serial","address":"/dev/ttyS25"},{"protocol":"serial","address":"/dev/ttyS26"},{"protocol":"serial","address":"/dev/ttyS27"},{"protocol":"serial","address":"/dev/ttyS28"},{"protocol":"serial","address":"/dev/ttyS29"},{"protocol":"serial","address":"/dev/ttyS30"},{"protocol":"serial","address":"/dev/ttyS31"}]
root INFO Attached boards and available ports changed:  {"oldState":{"boards":[],"ports":[]},"newState":{"boards":[],"ports":[{"protocol":"serial","address":"/dev/ttyS0"},{"protocol":"serial","address":"/dev/ttyS1"},{"protocol":"serial","address":"/dev/ttyS2"},{"protocol":"serial","address":"/dev/ttyS3"},{"protocol":"serial","address":"/dev/ttyS4"},{"protocol":"serial","address":"/dev/ttyS5"},{"protocol":"serial","address":"/dev/ttyS6"},{"protocol":"serial","address":"/dev/ttyS7"},{"protocol":"serial","address":"/dev/ttyS8"},{"protocol":"serial","address":"/dev/ttyS9"},{"protocol":"serial","address":"/dev/ttyS10"},{"protocol":"serial","address":"/dev/ttyS11"},{"protocol":"serial","address":"/dev/ttyS12"},{"protocol":"serial","address":"/dev/ttyS13"},{"protocol":"serial","address":"/dev/ttyS14"},{"protocol":"serial","address":"/dev/ttyS15"},{"protocol":"serial","address":"/dev/ttyS16"},{"protocol":"serial","address":"/dev/ttyS17"},{"protocol":"serial","address":"/dev/ttyS18"},{"protocol":"serial","address":"/dev/ttyS19"},{"protocol":"serial","address":"/dev/ttyS20"},{"protocol":"serial","address":"/dev/ttyS21"},{"protocol":"serial","address":"/dev/ttyS22"},{"protocol":"serial","address":"/dev/ttyS23"},{"protocol":"serial","address":"/dev/ttyS24"},{"protocol":"serial","address":"/dev/ttyS25"},{"protocol":"serial","address":"/dev/ttyS26"},{"protocol":"serial","address":"/dev/ttyS27"},{"protocol":"serial","address":"/dev/ttyS28"},{"protocol":"serial","address":"/dev/ttyS29"},{"protocol":"serial","address":"/dev/ttyS30"},{"protocol":"serial","address":"/dev/ttyS31"}]}}
root INFO >>> Disposing boards service...
root INFO <<< Disposed boards service.
monitor-service INFO >>> Disposing monitor service...
monitor-service INFO <<< Disposed monitor service.
root INFO >>> Disposing boards service...
root INFO <<< Disposed boards service.

ls -al ./arduino-pro-ide_nightly-20200907_Linux_64bit/resources/app/node_modules/arduino-ide-extension/build/
total 23120
drwxr-xr-x 4 kittaakos kittaakos     4096 Sep  7  2020 .
drwxr-xr-x 9 kittaakos kittaakos     4096 Sep  7  2020 ..
-rwxr-xr-x 1 kittaakos kittaakos 19828736 Aug 26 13:16 arduino-cli
-rwxr-xr-x 1 kittaakos kittaakos  3811781 Sep  4 04:10 arduino-language-server
drwxr-xr-x 2 kittaakos kittaakos     4096 Sep  7  2020 bin
drwxr-xr-x 2 kittaakos kittaakos     4096 Sep  7  2020 lib
-rwxr-xr-x 1 kittaakos kittaakos    15140 Jan 10  2020 LICENSE.TXT

Please use unzip so that the symlinks and the execution rights are also preserved.

I believe all questions have been addressed here. I am going to close this issue. Please let me know if I have overlooked something, and will reopen this or create a follow-up. Thanks!

[Master811129]

@kittaakos unzip command fixed the Issues successfully.

[kittaakos]

unzip command fixed the Issues successfully.

Thank you for getting back us with the update, @Master811129! I truly appreciate your help with this project. Please feel free to name me on any issues.