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Nov 24, 2023
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[MRG] add citation for sr(f)gw-kl #580

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4 changes: 3 additions & 1 deletion README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -340,4 +340,6 @@ distances between Gaussian distributions](https://hal.science/hal-03197398v2/fil

[60] Feydy, J., Roussillon, P., Trouvé, A., & Gori, P. (2019). [Fast and scalable optimal transport for brain tractograms](https://arxiv.org/pdf/2107.02010.pdf). In Medical Image Computing and Computer Assisted Intervention–MICCAI 2019: 22nd International Conference, Shenzhen, China, October 13–17, 2019, Proceedings, Part III 22 (pp. 636-644). Springer International Publishing.

[61] Charlier, B., Feydy, J., Glaunes, J. A., Collin, F. D., & Durif, G. (2021). [Kernel operations on the gpu, with autodiff, without memory overflows](https://www.jmlr.org/papers/volume22/20-275/20-275.pdf). The Journal of Machine Learning Research, 22(1), 3457-3462.
[61] Charlier, B., Feydy, J., Glaunes, J. A., Collin, F. D., & Durif, G. (2021). [Kernel operations on the gpu, with autodiff, without memory overflows](https://www.jmlr.org/papers/volume22/20-275/20-275.pdf). The Journal of Machine Learning Research, 22(1), 3457-3462.

[62] H. Van Assel, C. Vincent-Cuaz, T. Vayer, R. Flamary, N. Courty (2023). [Interpolating between Clustering and Dimensionality Reduction with Gromov-Wasserstein](https://arxiv.org/pdf/2310.03398.pdf). NeurIPS 2023 Workshop Optimal Transport and Machine Learning.
20 changes: 20 additions & 0 deletions ot/gromov/_semirelaxed.py
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Expand Up @@ -90,6 +90,10 @@ def semirelaxed_gromov_wasserstein(C1, C2, p=None, loss_fun='square_loss', symme
.. [48] Cédric Vincent-Cuaz, Rémi Flamary, Marco Corneli, Titouan Vayer, Nicolas Courty.
"Semi-relaxed Gromov-Wasserstein divergence and applications on graphs"
International Conference on Learning Representations (ICLR), 2022.
.. [62] H. Van Assel, C. Vincent-Cuaz, T. Vayer, R. Flamary, N. Courty.
"Interpolating between Clustering and Dimensionality Reduction with
Gromov-Wasserstein". NeurIPS 2023 Workshop OTML.

"""
arr = [C1, C2]
if p is not None:
Expand Down Expand Up @@ -220,6 +224,10 @@ def semirelaxed_gromov_wasserstein2(C1, C2, p=None, loss_fun='square_loss', symm
.. [48] Cédric Vincent-Cuaz, Rémi Flamary, Marco Corneli, Titouan Vayer, Nicolas Courty.
"Semi-relaxed Gromov-Wasserstein divergence and applications on graphs"
International Conference on Learning Representations (ICLR), 2022.

.. [62] H. Van Assel, C. Vincent-Cuaz, T. Vayer, R. Flamary, N. Courty.
"Interpolating between Clustering and Dimensionality Reduction with
Gromov-Wasserstein". NeurIPS 2023 Workshop OTML.
"""
# partial get_backend as the full one will be handled in gromov_wasserstein
nx = get_backend(C1, C2)
Expand Down Expand Up @@ -331,6 +339,10 @@ def semirelaxed_fused_gromov_wasserstein(
.. [48] Cédric Vincent-Cuaz, Rémi Flamary, Marco Corneli, Titouan Vayer, Nicolas Courty.
"Semi-relaxed Gromov-Wasserstein divergence and applications on graphs"
International Conference on Learning Representations (ICLR), 2022.

.. [62] H. Van Assel, C. Vincent-Cuaz, T. Vayer, R. Flamary, N. Courty.
"Interpolating between Clustering and Dimensionality Reduction with
Gromov-Wasserstein". NeurIPS 2023 Workshop OTML.
"""
arr = [M, C1, C2]
if p is not None:
Expand Down Expand Up @@ -470,6 +482,10 @@ def semirelaxed_fused_gromov_wasserstein2(M, C1, C2, p=None, loss_fun='square_lo
.. [48] Cédric Vincent-Cuaz, Rémi Flamary, Marco Corneli, Titouan Vayer, Nicolas Courty.
"Semi-relaxed Gromov-Wasserstein divergence and applications on graphs"
International Conference on Learning Representations (ICLR), 2022.

.. [62] H. Van Assel, C. Vincent-Cuaz, T. Vayer, R. Flamary, N. Courty.
"Interpolating between Clustering and Dimensionality Reduction with
Gromov-Wasserstein". NeurIPS 2023 Workshop OTML.
"""
# partial get_backend as the full one will be handled in gromov_wasserstein
nx = get_backend(C1, C2)
Expand Down Expand Up @@ -561,6 +577,10 @@ def solve_semirelaxed_gromov_linesearch(G, deltaG, cost_G, C1, C2, ones_p,
.. [48] Cédric Vincent-Cuaz, Rémi Flamary, Marco Corneli, Titouan Vayer, Nicolas Courty.
"Semi-relaxed Gromov-Wasserstein divergence and applications on graphs"
International Conference on Learning Representations (ICLR), 2021.

.. [62] H. Van Assel, C. Vincent-Cuaz, T. Vayer, R. Flamary, N. Courty.
"Interpolating between Clustering and Dimensionality Reduction with
Gromov-Wasserstein". NeurIPS 2023 Workshop OTML.
"""
if nx is None:
G, deltaG, C1, C2, M = list_to_array(G, deltaG, C1, C2, M)
Expand Down