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Update pathology tumor detection with new per-image cuCIM transforms #619

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Merged
merged 6 commits into from
Mar 23, 2022

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bhashemian
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Description

This PR updates the optimized pathology tumor detection pipeline with new the per-image cuCIM transforms instead of the transforms with per-batch (rand_color_jitter, rand_image_flip, rand_image_rotate_90, rand_zoom). It also make few minor updates the code.

Status

Ready (but waiting for the new PyPi release of cuCIM before merging)

Checks

  • Notebook runs automatically ./runner [-p <regex_pattern>]

bhashemian and others added 6 commits March 8, 2022 19:52
Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com>
Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com>
Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com>
Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com>
@wyli wyli enabled auto-merge (squash) March 23, 2022 08:16
@wyli wyli merged commit 376c9ca into Project-MONAI:master Mar 23, 2022
@bhashemian bhashemian deleted the update-with-new-cucim branch March 23, 2022 11:09
@bhashemian bhashemian linked an issue Mar 25, 2022 that may be closed by this pull request
boneseva pushed a commit to boneseva/MONAI-tutorials that referenced this pull request Apr 21, 2024
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Update pathology tumor detection tutorial
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