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Add inference example for bundle #604

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Merged
merged 22 commits into from
Mar 25, 2022
Merged

Add inference example for bundle #604

merged 22 commits into from
Mar 25, 2022

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Nic-Ma
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@Nic-Ma Nic-Ma commented Mar 7, 2022

part of #486

Description

This PR added inference example for monai.bundle.

Status

Ready

Checks

  • Notebook runs automatically ./runner [-p <regex_pattern>]

Signed-off-by: Nic Ma <nma@nvidia.com>
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Nic-Ma commented Mar 7, 2022

Command to run from shell:

python -m monai.bundle.scripts run --meta_file="configs/metadata.json" --config_file="configs/inference.json" --target="evaluator"

Nic-Ma added 12 commits March 17, 2022 19:49
Signed-off-by: Nic Ma <nma@nvidia.com>
Signed-off-by: Nic Ma <nma@nvidia.com>
Signed-off-by: Nic Ma <nma@nvidia.com>
Signed-off-by: Nic Ma <nma@nvidia.com>
Signed-off-by: Nic Ma <nma@nvidia.com>
Signed-off-by: Nic Ma <nma@nvidia.com>
Signed-off-by: Nic Ma <nma@nvidia.com>
Signed-off-by: Nic Ma <nma@nvidia.com>
Signed-off-by: Nic Ma <nma@nvidia.com>
Signed-off-by: Nic Ma <nma@nvidia.com>
@Nic-Ma Nic-Ma changed the title 486 Add inference example for bundle Add inference example for bundle Mar 24, 2022
@Nic-Ma Nic-Ma marked this pull request as ready for review March 24, 2022 11:23
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Nic-Ma commented Mar 24, 2022

PR is ready for review, it depends on: Project-MONAI/MONAI#3994.

Thanks.

@Nic-Ma Nic-Ma requested review from wyli, ericspod and rijobro March 24, 2022 11:24
Signed-off-by: Nic Ma <nma@nvidia.com>
@Nic-Ma Nic-Ma merged commit ac88fee into master Mar 25, 2022
@Nic-Ma Nic-Ma deleted the 486-add-inference-example branch March 25, 2022 14:28
boneseva pushed a commit to boneseva/MONAI-tutorials that referenced this pull request Apr 21, 2024
* [DLMED] add inference example

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update based on latest design

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update config content

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update to latest design

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update according to comments

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] enhance the expression

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] add more transforms

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] adjust config

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] add checkpoint logic

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] add checkpoint test

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update imports

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update for _requires_

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] add logging

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] fix typo

Signed-off-by: Nic Ma <nma@nvidia.com>

* Update README.md

* Update metadata.json

* [DLMED] add hugging face download

Signed-off-by: Nic Ma <nma@nvidia.com>

Co-authored-by: Wenqi Li <831580+wyli@users.noreply.github.com>
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3 participants