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Merged
merged 31 commits into from
Mar 21, 2023

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@dongyang0122 dongyang0122 commented Feb 13, 2023

Signed-off-by: dongy dongy@nvidia.com

Description

Adding tutorial to run steps in nnunetv2 via runner class.

this closes Project-MONAI/MONAI#6037

Checks

  • Avoid including large-size files in the PR.
  • Clean up long text outputs from code cells in the notebook.
  • For security purposes, please check the contents and remove any sensitive info such as user names and private key.
  • Ensure (1) hyperlinks and markdown anchors are working (2) use relative paths for tutorial repo files (3) put figure and graphs in the ./figure folder
  • Notebook runs automatically ./runner.sh -t <path to .ipynb file>

Signed-off-by: dongy <dongy@nvidia.com>
@dongyang0122 dongyang0122 self-assigned this Feb 13, 2023
@dongyang0122 dongyang0122 marked this pull request as draft February 23, 2023 05:22
dongy and others added 23 commits March 6, 2023 06:44
Signed-off-by: dongy <dongy@nvidia.com>
Signed-off-by: dongyang0122 <don.yang.mech@gmail.com>
Signed-off-by: dongyang0122 <don.yang.mech@gmail.com>
Signed-off-by: dongyang0122 <don.yang.mech@gmail.com>
Signed-off-by: dongyang0122 <don.yang.mech@gmail.com>
Signed-off-by: dongyang0122 <don.yang.mech@gmail.com>
Signed-off-by: dongyang0122 <don.yang.mech@gmail.com>
Signed-off-by: dongyang0122 <don.yang.mech@gmail.com>
Signed-off-by: dongyang0122 <don.yang.mech@gmail.com>
Signed-off-by: dongyang0122 <don.yang.mech@gmail.com>
Signed-off-by: dongyang0122 <don.yang.mech@gmail.com>
Signed-off-by: dongyang0122 <don.yang.mech@gmail.com>
@dongyang0122 dongyang0122 marked this pull request as ready for review March 20, 2023 09:39
@dongyang0122 dongyang0122 requested a review from wyli March 20, 2023 09:39
Signed-off-by: dongyang0122 <don.yang.mech@gmail.com>
Signed-off-by: dongyang0122 <don.yang.mech@gmail.com>
dongyang0122 and others added 5 commits March 20, 2023 11:41
Signed-off-by: dongyang0122 <don.yang.mech@gmail.com>
Signed-off-by: dongyang0122 <don.yang.mech@gmail.com>
@wyli wyli changed the title [WIP] add tutorial to run nnunet via runner class add tutorial to run nnunet via runner class Mar 21, 2023
@wyli wyli merged commit c501cbe into Project-MONAI:main Mar 21, 2023
boneseva pushed a commit to boneseva/MONAI-tutorials that referenced this pull request Apr 21, 2024
Signed-off-by: dongy <dongy@nvidia.com>

### Description
Adding tutorial to run steps in nnunetv2 via runner class.

this closes Project-MONAI/MONAI#6037

### Checks
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [ ] Avoid including large-size files in the PR.
- [ ] Clean up long text outputs from code cells in the notebook.
- [ ] For security purposes, please check the contents and remove any
sensitive info such as user names and private key.
- [ ] Ensure (1) hyperlinks and markdown anchors are working (2) use
relative paths for tutorial repo files (3) put figure and graphs in the
`./figure` folder
- [ ] Notebook runs automatically `./runner.sh -t <path to .ipynb file>`

---------

Signed-off-by: dongy <dongy@nvidia.com>
@dongyang0122 dongyang0122 deleted the add_nnunetv2_runner_tutorial branch August 22, 2024 22:09
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add a tutorial to run nnunet via runner class
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