diff --git a/packages/@vue/cli/__tests__/Generator.spec.js b/packages/@vue/cli/__tests__/Generator.spec.js
index 8e169b3e43..452582ee72 100644
--- a/packages/@vue/cli/__tests__/Generator.spec.js
+++ b/packages/@vue/cli/__tests__/Generator.spec.js
@@ -658,6 +658,54 @@ test('api: afterInvoke', async () => {
   expect(cbs).toContain(fn)
 })
 
+test('api: afterAnyInvoke and afterInvoke in hooks', async () => {
+  const fooAnyInvokeHandler = () => {}
+  const fooInvokeHandler = () => {}
+  const barAnyInvokeHandler = () => {}
+  const barInvokeHandler = () => {}
+
+  const getGeneratorFn = (invokeHandler, anyInvokeHandler) => {
+    const generatorFn = () => {}
+    generatorFn.hooks = api => {
+      api.afterInvoke(invokeHandler)
+      api.afterAnyInvoke(anyInvokeHandler)
+    }
+    return generatorFn
+  }
+
+  jest.doMock('vue-cli-plugin-foo-hooks/generator', () => {
+    return getGeneratorFn(fooInvokeHandler, fooAnyInvokeHandler)
+  }, { virtual: true })
+
+  jest.doMock('vue-cli-plugin-bar-hooks/generator', () => {
+    return getGeneratorFn(barInvokeHandler, barAnyInvokeHandler)
+  }, { virtual: true })
+
+  const afterAnyInvokeCbs = []
+  const afterInvokeCbs = []
+  const generator = new Generator('/', {
+    pkg: {
+      devDependencies: {
+        'vue-cli-plugin-foo-hooks': '1.0.0',
+        'vue-cli-plugin-bar-hooks': '1.0.0'
+      }
+    },
+    plugins: [
+      {
+        id: 'vue-cli-plugin-foo-hooks',
+        apply: getGeneratorFn(fooInvokeHandler, fooAnyInvokeHandler)
+      }
+    ],
+    afterInvokeCbs,
+    afterAnyInvokeCbs
+  })
+
+  await generator.generate()
+
+  expect(afterAnyInvokeCbs).toEqual([fooAnyInvokeHandler, barAnyInvokeHandler])
+  expect(afterInvokeCbs).toEqual([fooInvokeHandler])
+})
+
 test('api: resolve', () => {
   new Generator('/foo/bar', { plugins: [
     {
diff --git a/packages/@vue/cli/lib/Generator.js b/packages/@vue/cli/lib/Generator.js
index 929998ee18..5b292424dd 100644
--- a/packages/@vue/cli/lib/Generator.js
+++ b/packages/@vue/cli/lib/Generator.js
@@ -90,9 +90,7 @@ module.exports = class Generator {
     this.pm = new PackageManager({ context })
     this.imports = {}
     this.rootOptions = {}
-    // we don't load the passed afterInvokes yet because we want to ignore them from other plugins
-    this.passedAfterInvokeCbs = afterInvokeCbs
-    this.afterInvokeCbs = []
+    this.afterInvokeCbs = afterInvokeCbs
     this.afterAnyInvokeCbs = afterAnyInvokeCbs
     this.configTransforms = {}
     this.defaultConfigTransforms = defaultConfigTransforms
@@ -124,7 +122,10 @@ module.exports = class Generator {
     const { rootOptions, invoking } = this
     const pluginIds = this.plugins.map(p => p.id)
 
-    // apply hooks from all plugins
+    // avoid modifying the passed afterInvokes, because we want to ignore them from other plugins
+    const passedAfterInvokeCbs = this.afterInvokeCbs
+    this.afterInvokeCbs = []
+    // apply hooks from all plugins to collect 'afterAnyHooks'
     for (const id of this.allPluginIds) {
       const api = new GeneratorAPI(id, this, {}, rootOptions)
       const pluginGenerator = loadModule(`${id}/generator`, this.context)
@@ -139,7 +140,7 @@ module.exports = class Generator {
     const afterAnyInvokeCbsFromPlugins = this.afterAnyInvokeCbs
 
     // reset hooks
-    this.afterInvokeCbs = this.passedAfterInvokeCbs
+    this.afterInvokeCbs = passedAfterInvokeCbs
     this.afterAnyInvokeCbs = []
     this.postProcessFilesCbs = []
 
@@ -155,10 +156,9 @@ module.exports = class Generator {
         // because `afterAnyHooks` is already determined by the `allPluginIds` loop above
         await apply.hooks(api, options, rootOptions, pluginIds)
       }
-
-      // restore "any" hooks
-      this.afterAnyInvokeCbs = afterAnyInvokeCbsFromPlugins
     }
+    // restore "any" hooks
+    this.afterAnyInvokeCbs = afterAnyInvokeCbsFromPlugins
   }
 
   async generate ({