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Don't allow SemanticDB write to output directory JAR.
Writing to outputDirectory when it is a JAR can lead to producing malformed file, it is using FileOutputStream which works somehow correct, but if we would open the same JAR again in later phase (eg. genBCode) header of the file would be malformed: the result file grows in size respectively to provided input, but we can read only files written by SemanticDB phase.
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