🎨 Update plots from pymc to arviz dependencies & replace param sd with sigma

Author: CloudChaoszero

examples/survival_analysis/bayes_param_survival_pymc3.ipynb

@@ -532,7 +532,7 @@
     }
    ],
    "source": [
-    "pm.plot_posterior(trace, var_names=[\"beta\"], color=\"#87ceeb\");"
+    "az.plot_posterior(trace, var_names=[\"beta\"], color=\"#87ceeb\");"
    ]
   },
   {
@@ -552,7 +552,7 @@
     }
    ],
    "source": [
-    "pm.autocorrplot(trace, var_names=[\"beta\"]);"
+    "az.plot_autocorr(trace, var_names=[\"beta\"]);"
    ]
   },
   {
@@ -734,7 +734,7 @@
     }
    ],
    "source": [
-    "pm.forestplot(time_varying_trace, var_names=[\"beta\"]);"
+    "az.plot_forest(time_varying_trace, var_names=[\"beta\"]);"
    ]
   },
   {
@@ -974,7 +974,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.2"
+   "version": "3.8.5"
   }
  },
  "nbformat": 4,

examples/survival_analysis/censored_data.ipynb

@@ -171,9 +171,7 @@
   {
    "cell_type": "code",
    "execution_count": 9,
-   "metadata": {
-    "scrolled": false
-   },
+   "metadata": {},
    "outputs": [
     {
      "name": "stderr",
@@ -616,9 +614,7 @@
   {
    "cell_type": "code",
    "execution_count": 18,
-   "metadata": {
-    "scrolled": false
-   },
+   "metadata": {},
    "outputs": [
     {
      "name": "stderr",
@@ -856,7 +852,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.3"
+   "version": "3.8.5"
   },
   "toc": {
    "base_numbering": 1,

examples/survival_analysis/cox_model.ipynb

@@ -562,9 +562,9 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3.8.2 64-bit ('pymc3': conda)",
+   "display_name": "Python (PyMC3 Dev)",
    "language": "python",
-   "name": "python38264bitpymc3conda8b8223a2f9874eff9bd3e12d36ed2ca2"
+   "name": "pymc3-dev"
   },
   "language_info": {
    "codemirror_mode": {
@@ -576,7 +576,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.2-final"
+   "version": "3.8.5"
   },
   "name": "AR.ipynb"
  },

examples/survival_analysis/survival_analysis.ipynb

@@ -944,7 +944,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.7"
+   "version": "3.8.5"
   },
   "latex_envs": {
    "bibliofile": "biblio.bib",

examples/survival_analysis/weibull_aft.ipynb

@@ -342,7 +342,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.7"
+   "version": "3.8.5"
   }
  },
  "nbformat": 4,