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Fix documentation generation when legacy arginfo is generated
When legacy arginfo is generated, all the type info gets lost. Since this task is performed before any other additional functionalities of gen_stub.php (e.g. verification, method synopsis and class synopsis generation), these fail as they would require the missing type information.
The issue is fixed by deep cloning the file info objects (albeit only their affected properties), so that we use those for legacy arginfo generation, leaving the original ones untouched.
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