From f525c94f34a1521eb62bdca5647a16559fa1182a Mon Sep 17 00:00:00 2001 From: Fabio Bernardoni Date: Fri, 22 Oct 2021 13:20:30 +0200 Subject: [PATCH 1/2] corrected some bugs by testing within our workflow --- nipype/interfaces/spm/preprocess.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/nipype/interfaces/spm/preprocess.py b/nipype/interfaces/spm/preprocess.py index 87027ee61a..d0a7e47bd1 100644 --- a/nipype/interfaces/spm/preprocess.py +++ b/nipype/interfaces/spm/preprocess.py @@ -339,18 +339,17 @@ def _format_arg(self, opt, spec, val): if opt in ["in_files", "vdmfile"]: return scans_for_fname(ensure_list(val)) - return super(FieldMap, self)._format_arg(opt, spec, val) + return super(ApplyVDM, self)._format_arg(opt, spec, val) def _parse_inputs(self): """validate spm fieldmap options if set to None ignore""" einputs = super(ApplyVDM, self)._parse_inputs() - return [{"applymap": einputs[0]}] + return [{"applyvdm": einputs[0]}] def _list_outputs(self): outputs = self._outputs().get() - jobtype = self.inputs.jobtype resliced_all = self.inputs.write_which[0] > 0 resliced_mean = self.inputs.write_which[1] > 0 if resliced_mean: @@ -3037,3 +3036,4 @@ def _parse_inputs(self): return einputs else: return super(VBMSegment, self)._parse_inputs(skip=("spatial_normalization")) + From f4691be97456531a72c9c6ef8e21aade0d2695fe Mon Sep 17 00:00:00 2001 From: Fabio Bernardoni Date: Fri, 22 Oct 2021 14:32:53 +0200 Subject: [PATCH 2/2] formatting --- nipype/interfaces/spm/preprocess.py | 1 - 1 file changed, 1 deletion(-) diff --git a/nipype/interfaces/spm/preprocess.py b/nipype/interfaces/spm/preprocess.py index a589c4c80d..a4f4643f6b 100644 --- a/nipype/interfaces/spm/preprocess.py +++ b/nipype/interfaces/spm/preprocess.py @@ -3036,4 +3036,3 @@ def _parse_inputs(self): return einputs else: return super(VBMSegment, self)._parse_inputs(skip=("spatial_normalization")) -