From 104a51f890abfe386866df24a60fa0913ad41888 Mon Sep 17 00:00:00 2001
From: "Christopher J. Markiewicz" <markiewicz@stanford.edu>
Date: Wed, 17 Jul 2019 01:09:37 -0400
Subject: [PATCH 1/2] FIX: Docker build

---
 docker/generate_dockerfiles.sh | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/docker/generate_dockerfiles.sh b/docker/generate_dockerfiles.sh
index 453e6bd232..e73f8a6e95 100755
--- a/docker/generate_dockerfiles.sh
+++ b/docker/generate_dockerfiles.sh
@@ -52,8 +52,8 @@ do
   esac
 done
 
-# neurodocker version 0.4.1-22-g7c44e01
-NEURODOCKER_IMAGE="kaczmarj/neurodocker:master@sha256:858632a7533cac100f70932749b4cfc77fc40f667f41fca208f406215cff8a27"
+# neurodocker version 0.5.0
+NEURODOCKER_IMAGE="kaczmarj/neurodocker:0.5.0@sha256:7b3222162262fe9004376700695e0fba85b5cb9fa7b26eb8f66662ebf183425f"
 # neurodebian:stretch-non-free pulled on September 19, 2018
 BASE_IMAGE="neurodebian:stretch-non-free@sha256:7cd978427d7ad215834fee221d0536ed7825b3cddebc481eba2d792dfc2f7332"
 
@@ -88,6 +88,7 @@ function generate_main_dockerfile() {
           OMP_NUM_THREADS=1 \
     --arg PYTHON_VERSION_MAJOR=3 PYTHON_VERSION_MINOR=6 BUILD_DATE VCS_REF VERSION \
     --user neuro \
+    --workdir /home/neuro \
     --miniconda create_env=neuro \
                 conda_install='python=${PYTHON_VERSION_MAJOR}.${PYTHON_VERSION_MINOR}
                                libxml2 libxslt matplotlib mkl "numpy!=1.16.0" paramiko

From c588cbc6898b95ed2431d63dddb6b8e91e402eaa Mon Sep 17 00:00:00 2001
From: "Christopher J. Markiewicz" <markiewicz@stanford.edu>
Date: Wed, 17 Jul 2019 01:21:25 -0400
Subject: [PATCH 2/2] REVERT: neurodocker version

---
 docker/generate_dockerfiles.sh | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/docker/generate_dockerfiles.sh b/docker/generate_dockerfiles.sh
index e73f8a6e95..fd42dc4c8d 100755
--- a/docker/generate_dockerfiles.sh
+++ b/docker/generate_dockerfiles.sh
@@ -52,8 +52,8 @@ do
   esac
 done
 
-# neurodocker version 0.5.0
-NEURODOCKER_IMAGE="kaczmarj/neurodocker:0.5.0@sha256:7b3222162262fe9004376700695e0fba85b5cb9fa7b26eb8f66662ebf183425f"
+# neurodocker version 0.4.1-22-g7c44e01
+NEURODOCKER_IMAGE="kaczmarj/neurodocker:master@sha256:858632a7533cac100f70932749b4cfc77fc40f667f41fca208f406215cff8a27"
 # neurodebian:stretch-non-free pulled on September 19, 2018
 BASE_IMAGE="neurodebian:stretch-non-free@sha256:7cd978427d7ad215834fee221d0536ed7825b3cddebc481eba2d792dfc2f7332"