From 7219ca3adff72ba3d87e53f4253f9430dbb09c81 Mon Sep 17 00:00:00 2001
From: BenjaminMey <34044274+BenjaminMey@users.noreply.github.com>
Date: Sat, 9 Mar 2019 20:59:17 -0500
Subject: [PATCH] Update outputs for warped_file log_file to cwd

---
 nipype/interfaces/fsl/preprocess.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nipype/interfaces/fsl/preprocess.py b/nipype/interfaces/fsl/preprocess.py
index da06a5c574..66e3c5904d 100644
--- a/nipype/interfaces/fsl/preprocess.py
+++ b/nipype/interfaces/fsl/preprocess.py
@@ -1160,7 +1160,7 @@ def _list_outputs(self):
                 if suffix.endswith('.txt'):
                     change_ext = False
                 if isdefined(inval):
-                    outputs[key] = inval
+                    outputs[key] = os.path.abspath(inval)
                 else:
                     outputs[key] = self._gen_fname(
                         self.inputs.in_file,