From a4526b12dba3c56b43aca5b804d25dc19d1f514d Mon Sep 17 00:00:00 2001 From: Ami Tsuchida Date: Tue, 10 Jul 2018 13:29:45 +0200 Subject: [PATCH 1/2] change argstr: nobzero -> no_bzero in DWIExtract of Mrtrix3interface --- nipype/interfaces/mrtrix3/utils.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nipype/interfaces/mrtrix3/utils.py b/nipype/interfaces/mrtrix3/utils.py index c40c09e92e..a667c716f4 100644 --- a/nipype/interfaces/mrtrix3/utils.py +++ b/nipype/interfaces/mrtrix3/utils.py @@ -503,7 +503,7 @@ class DWIExtractInputSpec(MRTrix3BaseInputSpec): out_file = File( argstr='%s', mandatory=True, position=-1, desc='output image') bzero = traits.Bool(argstr='-bzero', desc='extract b=0 volumes') - nobzero = traits.Bool(argstr='-nobzero', desc='extract non b=0 volumes') + nobzero = traits.Bool(argstr='-no_bzero', desc='extract non b=0 volumes') singleshell = traits.Bool( argstr='-singleshell', desc='extract volumes with a specific shell') shell = traits.List( From e41bb69d6b5a92fa867c045c7a974d969d624bf0 Mon Sep 17 00:00:00 2001 From: Ami Tsuchida Date: Wed, 11 Jul 2018 10:20:19 +0200 Subject: [PATCH 2/2] run make specs for test_auto_DWIExtract.py --- nipype/interfaces/mrtrix3/tests/test_auto_DWIExtract.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_DWIExtract.py b/nipype/interfaces/mrtrix3/tests/test_auto_DWIExtract.py index d32d6de4ea..0114c5efe0 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_DWIExtract.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_DWIExtract.py @@ -21,7 +21,7 @@ def test_DWIExtract_inputs(): mandatory=True, position=-2, ), - nobzero=dict(argstr='-nobzero', ), + nobzero=dict(argstr='-no_bzero', ), nthreads=dict( argstr='-nthreads %d', nohash=True,