From c778f70d36f1a3df3d04ca64b49537b1fc50e8da Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Mon, 16 Apr 2018 09:48:55 -0400 Subject: [PATCH 1/2] FIX: Typo in "antsRegistrationSyNQuick.sh" --- nipype/interfaces/ants/registration.py | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/nipype/interfaces/ants/registration.py b/nipype/interfaces/ants/registration.py index c2a5348ff4..72635a4d45 100644 --- a/nipype/interfaces/ants/registration.py +++ b/nipype/interfaces/ants/registration.py @@ -1556,7 +1556,7 @@ class RegistrationSynQuick(ANTSCommand): >>> reg.inputs.moving_image = 'moving1.nii' >>> reg.inputs.num_threads = 2 >>> reg.cmdline - 'antsRegistrationSynQuick.sh -d 3 -f fixed1.nii -m moving1.nii -n 2 -o transform -p d -t s' + 'antsRegistrationSyNQuick.sh -d 3 -f fixed1.nii -m moving1.nii -n 2 -o transform -p d -t s' >>> reg.run() # doctest: +SKIP example for multiple images @@ -1567,18 +1567,18 @@ class RegistrationSynQuick(ANTSCommand): >>> reg.inputs.moving_image = ['moving1.nii', 'moving2.nii'] >>> reg.inputs.num_threads = 2 >>> reg.cmdline - 'antsRegistrationSynQuick.sh -d 3 -f fixed1.nii -f fixed2.nii -m moving1.nii -m moving2.nii -n 2 -o transform -p d -t s' + 'antsRegistrationSyNQuick.sh -d 3 -f fixed1.nii -f fixed2.nii -m moving1.nii -m moving2.nii -n 2 -o transform -p d -t s' >>> reg.run() # doctest: +SKIP """ - _cmd = 'antsRegistrationSynQuick.sh' + _cmd = 'antsRegistrationSyNQuick.sh' input_spec = RegistrationSynQuickInputSpec output_spec = RegistrationSynQuickOutputSpec def _num_threads_update(self): """ - antsRegistrationSynQuick.sh ignores environment variables, + antsRegistrationSyNQuick.sh ignores environment variables, so override environment update frm ANTSCommand class """ pass From 1ce0b28fb7b6e11f9af721aee298c20a97acc496 Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Tue, 17 Apr 2018 10:27:35 -0400 Subject: [PATCH 2/2] DOC: Typo --- nipype/interfaces/ants/registration.py | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/nipype/interfaces/ants/registration.py b/nipype/interfaces/ants/registration.py index 72635a4d45..5efdae17f2 100644 --- a/nipype/interfaces/ants/registration.py +++ b/nipype/interfaces/ants/registration.py @@ -1571,7 +1571,6 @@ class RegistrationSynQuick(ANTSCommand): >>> reg.run() # doctest: +SKIP """ - _cmd = 'antsRegistrationSyNQuick.sh' input_spec = RegistrationSynQuickInputSpec output_spec = RegistrationSynQuickOutputSpec @@ -1579,7 +1578,7 @@ class RegistrationSynQuick(ANTSCommand): def _num_threads_update(self): """ antsRegistrationSyNQuick.sh ignores environment variables, - so override environment update frm ANTSCommand class + so override environment update from ANTSCommand class """ pass