diff --git a/CHANGES b/CHANGES index 01a09b735a..c69b13e672 100644 --- a/CHANGES +++ b/CHANGES @@ -1,6 +1,7 @@ Upcoming release (0.14.1) ================ +* FIX: Cluster threshold in randomise + change default prefix (https://github.com/nipy/nipype/pull/2369) * MAINT: Cleaning / simplify ``Node`` (https://github.com/nipy/nipype/pull/#2325) 0.14.0 (November 29, 2017) diff --git a/nipype/interfaces/fsl/model.py b/nipype/interfaces/fsl/model.py index f130c01679..0dbf7c6bd1 100644 --- a/nipype/interfaces/fsl/model.py +++ b/nipype/interfaces/fsl/model.py @@ -1887,7 +1887,7 @@ class RandomiseInputSpec(FSLCommandInputSpec): in_file = File(exists=True, desc='4D input file', argstr='-i %s', position=0, mandatory=True) base_name = traits.Str( - 'tbss_', desc='the rootname that all generated files will have', + 'randomise', desc='the rootname that all generated files will have', argstr='-o "%s"', position=1, usedefault=True) design_mat = File( exists=True, desc='design matrix file', argstr='-d %s', position=2) @@ -1934,9 +1934,9 @@ class RandomiseInputSpec(FSLCommandInputSpec): var_smooth = traits.Int( argstr='-v %d', desc='use variance smoothing (std is in mm)') c_thresh = traits.Float( - argstr='-c %.2f', desc='carry out cluster-based thresholding') + argstr='-c %.1f', desc='carry out cluster-based thresholding') cm_thresh = traits.Float( - argstr='-C %.2f', desc='carry out cluster-mass-based thresholding') + argstr='-C %.1f', desc='carry out cluster-mass-based thresholding') f_c_thresh = traits.Float( argstr='-F %.2f', desc='carry out f cluster thresholding') f_cm_thresh = traits.Float( @@ -1980,7 +1980,7 @@ class Randomise(FSLCommand): >>> import nipype.interfaces.fsl as fsl >>> rand = fsl.Randomise(in_file='allFA.nii', mask = 'mask.nii', tcon='design.con', design_mat='design.mat') >>> rand.cmdline - 'randomise -i allFA.nii -o "tbss_" -d design.mat -t design.con -m mask.nii' + 'randomise -i allFA.nii -o "randomise" -d design.mat -t design.con -m mask.nii' """ diff --git a/nipype/interfaces/fsl/tests/test_auto_Randomise.py b/nipype/interfaces/fsl/tests/test_auto_Randomise.py index bcf65a0419..432455e4a8 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Randomise.py +++ b/nipype/interfaces/fsl/tests/test_auto_Randomise.py @@ -10,9 +10,9 @@ def test_Randomise_inputs(): position=1, usedefault=True, ), - c_thresh=dict(argstr='-c %.2f', + c_thresh=dict(argstr='-c %.1f', ), - cm_thresh=dict(argstr='-C %.2f', + cm_thresh=dict(argstr='-C %.1f', ), demean=dict(argstr='-D', ),