From b741b2d2324d6c562c6cc991eaac358a79d3f931 Mon Sep 17 00:00:00 2001 From: Dorota Jarecka Date: Wed, 3 Jan 2018 18:47:28 -0500 Subject: [PATCH 1/2] changing surf_reg in SampleToSurfaceInputSpec --- nipype/interfaces/freesurfer/utils.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/nipype/interfaces/freesurfer/utils.py b/nipype/interfaces/freesurfer/utils.py index a5568ebbcb..179147b271 100644 --- a/nipype/interfaces/freesurfer/utils.py +++ b/nipype/interfaces/freesurfer/utils.py @@ -139,8 +139,8 @@ class SampleToSurfaceInputSpec(FSTraitedSpec): subject_id = traits.String(desc="subject id") target_subject = traits.String(argstr="--trgsubject %s", desc="sample to surface of different subject than source") - surf_reg = traits.Bool(argstr="--surfreg", requires=["target_subject"], - desc="use surface registration to target subject") + surf_reg = traits.String('sphere.reg', argstr="--surfreg %s", requires=["target_subject"], + usedefault=True, desc="use surface registration to target subject") ico_order = traits.Int(argstr="--icoorder %d", requires=["target_subject"], desc="icosahedron order when target_subject is 'ico'") From 708219d39f799f8f01decb1caf83cb208bcd34fe Mon Sep 17 00:00:00 2001 From: Dorota Jarecka Date: Wed, 3 Jan 2018 18:48:15 -0500 Subject: [PATCH 2/2] changing autotest --- .../interfaces/freesurfer/tests/test_auto_SampleToSurface.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/nipype/interfaces/freesurfer/tests/test_auto_SampleToSurface.py b/nipype/interfaces/freesurfer/tests/test_auto_SampleToSurface.py index fd6440f10f..107243b1ef 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_SampleToSurface.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_SampleToSurface.py @@ -93,8 +93,9 @@ def test_SampleToSurface_inputs(): ), subject_id=dict(), subjects_dir=dict(), - surf_reg=dict(argstr='--surfreg', + surf_reg=dict(argstr='--surfreg %s', requires=['target_subject'], + usedefault=True, ), surface=dict(argstr='--surf %s', ),