diff --git a/nipype/interfaces/afni/preprocess.py b/nipype/interfaces/afni/preprocess.py index c96616273d..5d90591953 100644 --- a/nipype/interfaces/afni/preprocess.py +++ b/nipype/interfaces/afni/preprocess.py @@ -438,6 +438,12 @@ class AllineateInputSpec(AFNICommandInputSpec): traits.Enum(*_dirs), argstr='-nwarp_fixdep%s', desc='To fix non-linear warp dependency along directions.') + verbose = traits.Bool( + argstr='-verb', + desc='Print out verbose progress reports.') + quiet = traits.Bool( + argstr='-quiet', + desc="Don't print out verbose progress reports.") class AllineateOutputSpec(TraitedSpec): diff --git a/nipype/interfaces/afni/tests/test_auto_Allineate.py b/nipype/interfaces/afni/tests/test_auto_Allineate.py index b8b79df004..73ecc66414 100644 --- a/nipype/interfaces/afni/tests/test_auto_Allineate.py +++ b/nipype/interfaces/afni/tests/test_auto_Allineate.py @@ -95,6 +95,8 @@ def test_Allineate_inputs(): outputtype=dict(), overwrite=dict(argstr='-overwrite', ), + quiet=dict(argstr='-quiet', + ), reference=dict(argstr='-base %s', ), replacebase=dict(argstr='-replacebase', @@ -118,6 +120,8 @@ def test_Allineate_inputs(): ), usetemp=dict(argstr='-usetemp', ), + verbose=dict(argstr='-verb', + ), warp_type=dict(argstr='-warp %s', ), warpfreeze=dict(argstr='-warpfreeze', diff --git a/nipype/interfaces/afni/tests/test_auto_Copy.py b/nipype/interfaces/afni/tests/test_auto_Copy.py index 0917a0628e..43fa537eb4 100644 --- a/nipype/interfaces/afni/tests/test_auto_Copy.py +++ b/nipype/interfaces/afni/tests/test_auto_Copy.py @@ -30,6 +30,8 @@ def test_Copy_inputs(): terminal_output=dict(deprecated='1.0.0', nohash=True, ), + verbose=dict(argstr='-verb', + ), ) inputs = Copy.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_MaskTool.py b/nipype/interfaces/afni/tests/test_auto_MaskTool.py index 775b34adab..eeaef55562 100644 --- a/nipype/interfaces/afni/tests/test_auto_MaskTool.py +++ b/nipype/interfaces/afni/tests/test_auto_MaskTool.py @@ -49,6 +49,8 @@ def test_MaskTool_inputs(): ), union=dict(argstr='-union', ), + verbose=dict(argstr='-verb %s', + ), ) inputs = MaskTool.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_TCat.py b/nipype/interfaces/afni/tests/test_auto_TCat.py index 597ead13cb..f74a122828 100644 --- a/nipype/interfaces/afni/tests/test_auto_TCat.py +++ b/nipype/interfaces/afni/tests/test_auto_TCat.py @@ -32,6 +32,8 @@ def test_TCat_inputs(): terminal_output=dict(deprecated='1.0.0', nohash=True, ), + verbose=dict(argstr='-verb', + ), ) inputs = TCat.input_spec() diff --git a/nipype/interfaces/afni/utils.py b/nipype/interfaces/afni/utils.py index 3e03adda92..bce63c61e0 100644 --- a/nipype/interfaces/afni/utils.py +++ b/nipype/interfaces/afni/utils.py @@ -751,6 +751,9 @@ class CopyInputSpec(AFNICommandInputSpec): argstr='%s', position=-1, name_source='in_file') + verbose = traits.Bool( + desc='print progress reports', + argstr='-verb') class Copy(AFNICommand): @@ -1377,6 +1380,9 @@ class MaskToolInputSpec(AFNICommandInputSpec): 'or using the labels in {R,L,A,P,I,S}.', argstr='-fill_dirs %s', requires=['fill_holes']) + verbose = traits.Int( + desc='specify verbosity level, for 0 to 3', + argstr='-verb %s') class MaskToolOutputSpec(TraitedSpec): @@ -1985,6 +1991,9 @@ class TCatInputSpec(AFNICommandInputSpec): 'dataset mean back in. Option -rlt++ adds overall mean of all ' 'dataset timeseries back in.', position=1) + verbose = traits.Bool( + desc='Print out some verbose output as the program', + argstr='-verb') class TCat(AFNICommand):