diff --git a/nipype/interfaces/afni/preprocess.py b/nipype/interfaces/afni/preprocess.py index e46c9689c2..2135545b95 100644 --- a/nipype/interfaces/afni/preprocess.py +++ b/nipype/interfaces/afni/preprocess.py @@ -3490,7 +3490,7 @@ class Qwarp(AFNICommand): >>> qwarp3.inputs.base_file = 'mni.nii' >>> qwarp3.inputs.allineate = True >>> qwarp3.inputs.allineate_opts = '-cose lpa -verb' - >>> qwarp3.cmdline # doctest: +ALLOW_UNICODE + >>> qwarp3.cmdline "3dQwarp -allineate -allineate_opts '-cose lpa -verb' -base mni.nii -source structural.nii -prefix structural_QW" >>> res3 = qwarp3.run() # doctest: +SKIP """ _cmd = '3dQwarp' diff --git a/nipype/interfaces/afni/utils.py b/nipype/interfaces/afni/utils.py index e492b39d47..242b5077ee 100644 --- a/nipype/interfaces/afni/utils.py +++ b/nipype/interfaces/afni/utils.py @@ -1674,7 +1674,7 @@ class NwarpCat(AFNICommand): >>> nwarpcat = afni.NwarpCat() >>> nwarpcat.inputs.in_files = ['Q25_warp+tlrc.HEAD', ('IDENT', 'structural.nii')] >>> nwarpcat.inputs.out_file = 'Fred_total_WARP' - >>> nwarpcat.cmdline # doctest: +ALLOW_UNICODE + >>> nwarpcat.cmdline "3dNwarpCat -prefix Fred_total_WARP Q25_warp+tlrc.HEAD 'IDENT(structural.nii)'" >>> res = nwarpcat.run() # doctest: +SKIP diff --git a/nipype/interfaces/ants/resampling.py b/nipype/interfaces/ants/resampling.py index e268cb43e2..3ed60a51b1 100644 --- a/nipype/interfaces/ants/resampling.py +++ b/nipype/interfaces/ants/resampling.py @@ -75,7 +75,7 @@ class WarpTimeSeriesImageMultiTransform(ANTSCommand): >>> wtsimt.inputs.reference_image = 'ants_deformed.nii.gz' >>> wtsimt.inputs.transformation_series = ['ants_Warp.nii.gz','ants_Affine.txt'] >>> wtsimt.inputs.invert_affine = [1] # # this will invert the 1st Affine file: ants_Affine.txt - >>> wtsimt.cmdline # doctest: +ALLOW_UNICODE + >>> wtsimt.cmdline 'WarpTimeSeriesImageMultiTransform 4 resting.nii resting_wtsimt.nii -R ants_deformed.nii.gz ants_Warp.nii.gz \ -i ants_Affine.txt' """