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TEST: Fix RobustRegister cmdline checks
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nipype/interfaces/freesurfer/tests/test_preprocess.py

Lines changed: 4 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -17,6 +17,7 @@ def test_robustregister(create_files_in_directory):
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filelist, outdir = create_files_in_directory
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reg = freesurfer.RobustRegister()
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cwd = os.getcwd()
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# make sure command gets called
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assert reg.cmd == 'mri_robust_register'
@@ -28,8 +29,9 @@ def test_robustregister(create_files_in_directory):
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reg.inputs.source_file = filelist[0]
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reg.inputs.target_file = filelist[1]
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reg.inputs.auto_sens = True
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assert reg.cmdline == ('mri_robust_register '
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'--satit --lta %s_robustreg.lta --mov %s --dst %s' % (filelist[0][:-4], filelist[0], filelist[1]))
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assert reg.cmdline == ('mri_robust_register --satit --lta '
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'%s/%s_robustreg.lta --mov %s --dst %s' %
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(cwd, filelist[0][:-4], filelist[0], filelist[1]))
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# constructor based parameter setting
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reg2 = freesurfer.RobustRegister(source_file=filelist[0], target_file=filelist[1], outlier_sens=3.0,

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