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fix setting inputs.ignore_exception
1 parent 2c35800 commit e722da7

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+6
-6
lines changed

2 files changed

+6
-6
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doc/users/saving_workflows.rst

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -73,27 +73,27 @@ This will create a file "outputtestsave.py" with the following content:
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return out
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testfunc.inputs.function_str = getsource(testfunc_1)
76-
testfunc.inputs.ignore_exception = False
76+
testfunc.ignore_exception = False
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testfunc.inputs.in1 = '-sub'
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testsave.connect(inode, "a", testfunc, "in1")
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# Node: testsave.bet2
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bet2 = MapNode(BET(), iterfield=['infile'], name="bet2")
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bet2.iterables = ('frac', [0.4, 0.5])
82+
bet2.interface.ignore_exception = False
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bet2.inputs.environ = {'FSLOUTPUTTYPE': 'NIFTI_GZ'}
83-
bet2.inputs.ignore_exception = False
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bet2.inputs.output_type = 'NIFTI_GZ'
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bet2.terminal_output = 'stream'
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# Node: testsave.bet
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bet = Node(BET(), name="bet")
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bet.iterables = ('frac', [0.3, 0.4])
89+
bet.interface.ignore_exception = False
8990
bet.inputs.environ = {'FSLOUTPUTTYPE': 'NIFTI_GZ'}
90-
bet.inputs.ignore_exception = False
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bet.inputs.output_type = 'NIFTI_GZ'
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bet.terminal_output = 'stream'
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# Node: testsave.maths
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maths = Node(ImageMaths(), name="maths")
95+
maths.interface.ignore_exception = False
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maths.inputs.environ = {'FSLOUTPUTTYPE': 'NIFTI_GZ'}
96-
maths.inputs.ignore_exception = False
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maths.inputs.output_type = 'NIFTI_GZ'
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maths.terminal_output = 'stream'
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testsave.connect(bet2, ('mask_file', func), maths, "in_file2")

nipype/workflows/smri/ants/ANTSBuildTemplate.py

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -183,7 +183,7 @@ def ANTSTemplateBuildSingleIterationWF(iterationPhasePrefix=''):
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output_names=['out']),
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run_without_submitting=True,
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name='MakeTransformsLists')
186-
MakeTransformsLists.inputs.ignore_exception = True
186+
MakeTransformsLists.interface.ignore_exception = True
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TemplateBuildSingleIterationWF.connect(
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BeginANTS, 'warp_transform', MakeTransformsLists, 'warpTransformList')
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TemplateBuildSingleIterationWF.connect(BeginANTS, 'affine_transform',
@@ -263,7 +263,7 @@ def ANTSTemplateBuildSingleIterationWF(iterationPhasePrefix=''):
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output_names=['TransformListWithGradientWarps']),
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run_without_submitting=True,
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name='MakeTransformListWithGradientWarps')
266-
ApplyInvAverageAndFourTimesGradientStepWarpImage.inputs.ignore_exception = True
266+
ApplyInvAverageAndFourTimesGradientStepWarpImage.interface.ignore_exception = True
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268268
TemplateBuildSingleIterationWF.connect(
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AvgAffineTransform, 'affine_transform',

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