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Auto-generated unit tests for new afni interfaces
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‎nipype/interfaces/afni/tests/test_auto_ClipLevel.py

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# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
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from ....testing import assert_equal
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from ..preprocess import ClipLevel
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def test_ClipLevel_inputs():
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input_map = dict(args=dict(argstr='%s',
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),
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doall=dict(argstr='-doall',
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position=3,
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xor='grad',
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),
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environ=dict(nohash=True,
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usedefault=True,
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),
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grad=dict(argstr='-grad %s',
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position=3,
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xor='doall',
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),
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ignore_exception=dict(nohash=True,
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usedefault=True,
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),
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in_file=dict(argstr='%s',
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mandatory=True,
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position=-1,
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),
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mfrac=dict(argstr='-mfrac %s',
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position=2,
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),
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terminal_output=dict(nohash=True,
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),
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)
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inputs = ClipLevel.input_spec()
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for key, metadata in list(input_map.items()):
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for metakey, value in list(metadata.items()):
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yield assert_equal, getattr(inputs.traits()[key], metakey), value
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def test_ClipLevel_outputs():
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output_map = dict(clip_val=dict(),
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)
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outputs = ClipLevel.output_spec()
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for key, metadata in list(output_map.items()):
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for metakey, value in list(metadata.items()):
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yield assert_equal, getattr(outputs.traits()[key], metakey), value

‎nipype/interfaces/afni/tests/test_auto_DegreeCentrality.py

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# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
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from ....testing import assert_equal
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from ..preprocess import DegreeCentrality
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def test_DegreeCentrality_inputs():
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input_map = dict(args=dict(argstr='%s',
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),
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autoclip=dict(argstr='-autoclip',
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),
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automask=dict(argstr='-automask',
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),
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environ=dict(nohash=True,
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usedefault=True,
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),
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ignore_exception=dict(nohash=True,
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usedefault=True,
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),
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in_file=dict(argstr='%s',
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copyfile=False,
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mandatory=True,
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position=-1,
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),
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mask=dict(argstr='-mask %s',
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),
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oned_file=dict(argstr='-out1D %s',
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mandatory=False,
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),
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out_file=dict(argstr='-prefix %s',
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name_source=['in_file'],
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name_template='%s_afni',
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),
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outputtype=dict(),
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polort=dict(argstr='-polort %d',
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),
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sparsity=dict(argstr='-sparsity %f',
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),
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terminal_output=dict(nohash=True,
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),
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thresh=dict(argstr='-thresh %f',
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),
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)
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inputs = DegreeCentrality.input_spec()
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for key, metadata in list(input_map.items()):
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for metakey, value in list(metadata.items()):
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yield assert_equal, getattr(inputs.traits()[key], metakey), value
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def test_DegreeCentrality_outputs():
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output_map = dict(oned_file=dict(),
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out_file=dict(),
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)
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outputs = DegreeCentrality.output_spec()
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for key, metadata in list(output_map.items()):
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for metakey, value in list(metadata.items()):
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yield assert_equal, getattr(outputs.traits()[key], metakey), value

‎nipype/interfaces/afni/tests/test_auto_ECM.py

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# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
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from ....testing import assert_equal
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from ..preprocess import ECM
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def test_ECM_inputs():
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input_map = dict(args=dict(argstr='%s',
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),
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autoclip=dict(argstr='-autoclip',
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),
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automask=dict(argstr='-automask',
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),
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environ=dict(nohash=True,
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usedefault=True,
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),
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eps=dict(argstr='-eps %f',
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),
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fecm=dict(argstr='-fecm',
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),
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full=dict(argstr='-full',
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),
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ignore_exception=dict(nohash=True,
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usedefault=True,
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),
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in_file=dict(argstr='%s',
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copyfile=False,
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mandatory=True,
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position=-1,
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),
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mask=dict(argstr='-mask %s',
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),
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max_iter=dict(argstr='-max_iter %d',
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),
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memory=dict(argstr='-memory %f',
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),
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out_file=dict(argstr='-prefix %s',
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name_source=['in_file'],
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name_template='%s_afni',
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),
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outputtype=dict(),
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polort=dict(argstr='-polort %d',
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),
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scale=dict(argstr='-scale %f',
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),
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shift=dict(argstr='-shift %f',
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),
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sparsity=dict(argstr='-sparsity %f',
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),
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terminal_output=dict(nohash=True,
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),
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thresh=dict(argstr='-thresh %f',
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),
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)
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inputs = ECM.input_spec()
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for key, metadata in list(input_map.items()):
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for metakey, value in list(metadata.items()):
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yield assert_equal, getattr(inputs.traits()[key], metakey), value
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def test_ECM_outputs():
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output_map = dict(out_file=dict(),
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)
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outputs = ECM.output_spec()
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for key, metadata in list(output_map.items()):
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for metakey, value in list(metadata.items()):
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yield assert_equal, getattr(outputs.traits()[key], metakey), value

‎nipype/interfaces/afni/tests/test_auto_LFCD.py

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# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
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from ....testing import assert_equal
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from ..preprocess import LFCD
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def test_LFCD_inputs():
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input_map = dict(args=dict(argstr='%s',
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),
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autoclip=dict(argstr='-autoclip',
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),
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automask=dict(argstr='-automask',
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),
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environ=dict(nohash=True,
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usedefault=True,
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),
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ignore_exception=dict(nohash=True,
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usedefault=True,
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),
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in_file=dict(argstr='%s',
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copyfile=False,
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mandatory=True,
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position=-1,
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),
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mask=dict(argstr='-mask %s',
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),
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out_file=dict(argstr='-prefix %s',
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name_source=['in_file'],
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name_template='%s_afni',
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),
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outputtype=dict(),
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polort=dict(argstr='-polort %d',
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),
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terminal_output=dict(nohash=True,
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),
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thresh=dict(argstr='-thresh %f',
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),
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)
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inputs = LFCD.input_spec()
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for key, metadata in list(input_map.items()):
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for metakey, value in list(metadata.items()):
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yield assert_equal, getattr(inputs.traits()[key], metakey), value
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def test_LFCD_outputs():
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output_map = dict(out_file=dict(),
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)
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outputs = LFCD.output_spec()
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for key, metadata in list(output_map.items()):
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for metakey, value in list(metadata.items()):
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yield assert_equal, getattr(outputs.traits()[key], metakey), value

‎nipype/interfaces/afni/tests/test_auto_MaskTool.py

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# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
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from ....testing import assert_equal
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from ..preprocess import MaskTool
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def test_MaskTool_inputs():
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input_map = dict(args=dict(argstr='%s',
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),
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count=dict(argstr='-count',
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position=2,
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),
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datum=dict(argstr='-datum %s',
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),
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dilate_inputs=dict(argstr='-dilate_inputs %s',
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),
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dilate_results=dict(argstr='-dilate_results %s',
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),
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environ=dict(nohash=True,
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usedefault=True,
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),
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fill_dirs=dict(argstr='-fill_dirs %s',
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requires=['fill_holes'],
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),
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fill_holes=dict(argstr='-fill_holes',
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),
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frac=dict(argstr='-frac %s',
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),
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ignore_exception=dict(nohash=True,
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usedefault=True,
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),
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in_file=dict(argstr='-input %s',
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copyfile=False,
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mandatory=True,
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position=-1,
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),
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inter=dict(argstr='-inter',
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),
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out_file=dict(argstr='-prefix %s',
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name_source='in_file',
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name_template='%s_mask',
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),
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outputtype=dict(),
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terminal_output=dict(nohash=True,
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),
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union=dict(argstr='-union',
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),
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)
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inputs = MaskTool.input_spec()
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for key, metadata in list(input_map.items()):
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for metakey, value in list(metadata.items()):
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yield assert_equal, getattr(inputs.traits()[key], metakey), value
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def test_MaskTool_outputs():
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output_map = dict(out_file=dict(),
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)
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outputs = MaskTool.output_spec()
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for key, metadata in list(output_map.items()):
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for metakey, value in list(metadata.items()):
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yield assert_equal, getattr(outputs.traits()[key], metakey), value

‎nipype/interfaces/afni/tests/test_auto_Seg.py

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# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
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from ....testing import assert_equal
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from ..preprocess import Seg
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def test_Seg_inputs():
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input_map = dict(args=dict(argstr='%s',
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),
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bias_classes=dict(argstr='-bias_classes %s',
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),
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bias_fwhm=dict(argstr='-bias_fwhm %f',
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),
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blur_meth=dict(argstr='-blur_meth %s',
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),
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bmrf=dict(argstr='-bmrf %f',
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),
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classes=dict(argstr='-classes %s',
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),
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environ=dict(nohash=True,
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usedefault=True,
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),
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ignore_exception=dict(nohash=True,
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usedefault=True,
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),
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in_file=dict(argstr='-anat %s',
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copyfile=True,
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mandatory=True,
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position=-1,
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),
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main_N=dict(argstr='-main_N %d',
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),
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mask=dict(argstr='-mask %s',
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exists=True,
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mandatory=True,
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position=-2,
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),
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mixfloor=dict(argstr='-mixfloor %f',
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),
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mixfrac=dict(argstr='-mixfrac %s',
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),
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prefix=dict(argstr='-prefix %s',
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),
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terminal_output=dict(nohash=True,
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),
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)
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inputs = Seg.input_spec()
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for key, metadata in list(input_map.items()):
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for metakey, value in list(metadata.items()):
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yield assert_equal, getattr(inputs.traits()[key], metakey), value
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def test_Seg_outputs():
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output_map = dict(out_file=dict(),
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)
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outputs = Seg.output_spec()
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for key, metadata in list(output_map.items()):
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for metakey, value in list(metadata.items()):
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yield assert_equal, getattr(outputs.traits()[key], metakey), value

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