File tree Expand file tree Collapse file tree 2 files changed +10
-34
lines changed Expand file tree Collapse file tree 2 files changed +10
-34
lines changed Original file line number Diff line number Diff line change 25
25
26
26
git clone https://github.com/nipy/nipype.git
27
27
28
+ Check out the list of nipype's `current dependencies <https://github.com/nipy/nipype/blob/master/requirements.txt >`_.
29
+
28
30
Install
29
31
-------
30
32
31
33
The installation process is similar to other Python packages.
32
34
33
- If you already have a Python environment setup that has the dependencies listed
34
- below, you can do::
35
+ If you already have a Python environment set up, you can do::
35
36
36
37
easy_install nipype
37
38
@@ -78,6 +79,10 @@ you can also test with nosetests::
78
79
79
80
nosetests --with-doctest <installation filepath>/nipype --exclude=external --exclude=testing
80
81
82
+ or::
83
+
84
+ nosetests --with-doctest nipype
85
+
81
86
A successful test run should complete in a few minutes and end with
82
87
something like::
83
88
@@ -108,38 +113,9 @@ On unix systems, set an empty environment variable::
108
113
109
114
This will skip any tests that require matlab.
110
115
111
- Dependencies
116
+ Recommended Software
112
117
------------
113
118
114
- Below is a list of required dependencies, along with additional software
115
- recommendations.
116
-
117
- Must Have
118
- ~~~~~~~~~
119
-
120
- .. note ::
121
-
122
- Full distributions of Nipype, such as the ones in Anaconda _ or Canopy _, provide
123
- the following packages automatically.
124
-
125
- Nibabel _ 1.0 - 1.4
126
- Neuroimaging file i/o library.
127
-
128
- Python _ 2.7 or Python _ 3
129
-
130
- NetworkX _ 1.0 - 1.8
131
- Python package for working with complex networks.
132
-
133
- NumPy _ 1.3 - 1.7
134
-
135
- SciPy _ 0.7 - 0.12
136
- Numpy and Scipy are high-level, optimized scientific computing libraries.
137
-
138
- Enthought _ Traits _ 4.0.0 - 4.3.0
139
-
140
- Dateutil 1.5 -
141
-
142
-
143
119
Strong Recommendations
144
120
~~~~~~~~~~~~~~~~~~~~~~
145
121
Original file line number Diff line number Diff line change @@ -59,11 +59,11 @@ Checklist for analysis tutorials
59
59
For the analysis tutorials, we will be using a slightly modified version of the
60
60
FBIRN Phase I travelling data set.
61
61
62
- # Download and extract the `Pipeline tutorial data (429MB).
62
+ 1. Download and extract the `Pipeline tutorial data (429MB).
63
63
<https://figshare.com/articles/nipype_tutorial_data/3395806> `_
64
64
(md5: d175083784c5167de4ea11b43b37c166)
65
65
66
- # Ensure that all programs are available by calling ``bet ``, ``matlab ``
66
+ 2. Ensure that all programs are available by calling ``bet ``, ``matlab ``
67
67
and then ``which spm `` within matlab to ensure you have spm5/8/12 in your
68
68
matlab path.
69
69
You can’t perform that action at this time.
0 commit comments