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fix: doctest
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nipype/interfaces/ants/registration.py

Lines changed: 9 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -394,8 +394,15 @@ class Registration(ANTSCommand):
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>>> reg4.inputs.collapse_output_transforms = True
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>>> outputs = reg4._list_outputs()
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>>> print outputs #doctest: +ELLIPSIS
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{'reverse_invert_flags': [True, False], 'inverse_composite_transform': ['.../nipype/testing/data/output_InverseComposite.h5'], 'warped_image': '.../nipype/testing/data/output_warped_image.nii.gz', 'inverse_warped_image': <undefined>, 'forward_invert_flags': [False, False], 'reverse_transforms': ['.../nipype/testing/data/output_0GenericAffine.mat', '.../nipype/testing/data/output_1InverseWarp.nii.gz'], 'composite_transform': ['.../nipype/testing/data/output_Composite.h5'], 'forward_transforms': ['.../nipype/testing/data/output_0GenericAffine.mat', '.../nipype/testing/data/output_1Warp.nii.gz']}
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>>> reg4.aggregate_outputs() #doctest: +SKIP
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{'reverse_invert_flags': [], 'inverse_composite_transform': ['.../nipype/testing/data/output_InverseComposite.h5'], 'warped_image': '.../nipype/testing/data/output_warped_image.nii.gz', 'inverse_warped_image': <undefined>, 'forward_invert_flags': [], 'reverse_transforms': [], 'composite_transform': ['.../nipype/testing/data/output_Composite.h5'], 'forward_transforms': []}
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>>> # Test collapse transforms flag
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>>> reg4b = copy.deepcopy(reg4)
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>>> reg4b.inputs.write_composite_transform = False
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>>> outputs = reg4b._list_outputs()
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>>> print outputs #doctest: +ELLIPSIS
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{'reverse_invert_flags': [True, False], 'inverse_composite_transform': <undefined>, 'warped_image': '.../nipype/testing/data/output_warped_image.nii.gz', 'inverse_warped_image': <undefined>, 'forward_invert_flags': [False, False], 'reverse_transforms': ['.../nipype/testing/data/output_0GenericAffine.mat', '.../nipype/testing/data/output_1InverseWarp.nii.gz'], 'composite_transform': <undefined>, 'forward_transforms': ['.../nipype/testing/data/output_0GenericAffine.mat', '.../nipype/testing/data/output_1Warp.nii.gz']}
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>>> reg4b.aggregate_outputs() #doctest: +SKIP
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>>> # Test multiple metrics per stage
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>>> reg5 = copy.deepcopy(reg)

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