Tried manually generating the missing automatic test modules.

Author: ZviBaratz

nipype/interfaces/mrtrix3/tests/test_auto_MRTransform.py

@@ -0,0 +1,113 @@
+# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
+from ..utils import MRTransform
+
+
+def test_MRTransform_inputs():
+    input_map = dict(
+        args=dict(
+            argstr="%s",
+        ),
+        bval_scale=dict(
+            argstr="-bvalue_scaling %s",
+        ),
+        debug=dict(
+            argstr="-debug",
+            position=1,
+        ),
+        environ=dict(
+            nohash=True,
+            usedefault=True,
+        ),
+        flip_x=dict(
+            argstr="-flipx",
+            position=1,
+        ),
+        grad_file=dict(
+            argstr="-grad %s",
+            extensions=None,
+            xor=["grad_fsl"],
+        ),
+        grad_fsl=dict(
+            argstr="-fslgrad %s %s",
+            xor=["grad_file"],
+        ),
+        in_bval=dict(
+            extensions=None,
+        ),
+        in_bvec=dict(
+            argstr="-fslgrad %s %s",
+            extensions=None,
+        ),
+        in_files=dict(
+            argstr="%s",
+            mandatory=True,
+            position=-2,
+        ),
+        invert=dict(
+            argstr="-inverse",
+            position=1,
+        ),
+        linear_transform=dict(
+            argstr="-linear %s",
+            extensions=None,
+            position=1,
+        ),
+        nthreads=dict(
+            argstr="-nthreads %d",
+            nohash=True,
+        ),
+        out_bval=dict(
+            extensions=None,
+        ),
+        out_bvec=dict(
+            argstr="-export_grad_fsl %s %s",
+            extensions=None,
+        ),
+        out_file=dict(
+            argstr="%s",
+            extensions=None,
+            genfile=True,
+            position=-1,
+        ),
+        quiet=dict(
+            argstr="-quiet",
+            position=1,
+        ),
+        reference_image=dict(
+            argstr="-reference %s",
+            extensions=None,
+            position=1,
+        ),
+        replace_transform=dict(
+            argstr="-replace",
+            position=1,
+        ),
+        template_image=dict(
+            argstr="-template %s",
+            extensions=None,
+            position=1,
+        ),
+        transformation_file=dict(
+            argstr="-transform %s",
+            extensions=None,
+            position=1,
+        ),
+    )
+    inputs = MRTransform.input_spec()
+
+    for key, metadata in list(input_map.items()):
+        for metakey, value in list(metadata.items()):
+            assert getattr(inputs.traits()[key], metakey) == value
+
+
+def test_MRTransform_outputs():
+    output_map = dict(
+        out_file=dict(
+            extensions=None,
+        ),
+    )
+    outputs = MRTransform.output_spec()
+
+    for key, metadata in list(output_map.items()):
+        for metakey, value in list(metadata.items()):
+            assert getattr(outputs.traits()[key], metakey) == value

nipype/interfaces/mrtrix3/tests/test_auto_TransformFSLConvert.py

@@ -0,0 +1,93 @@
+# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
+from ..utils import TransformFSLConvert
+
+
+def test_TransformFSLConvert_inputs():
+    input_map = dict(
+        args=dict(
+            argstr="%s",
+        ),
+        bval_scale=dict(
+            argstr="-bvalue_scaling %s",
+        ),
+        environ=dict(
+            nohash=True,
+            usedefault=True,
+        ),
+        flirt_import=dict(
+            argstr="flirt_import",
+            mandatory=True,
+            position=-2,
+            usedefault=True,
+        ),
+        grad_file=dict(
+            argstr="-grad %s",
+            extensions=None,
+            xor=["grad_fsl"],
+        ),
+        grad_fsl=dict(
+            argstr="-fslgrad %s %s",
+            xor=["grad_file"],
+        ),
+        in_bval=dict(
+            extensions=None,
+        ),
+        in_bvec=dict(
+            argstr="-fslgrad %s %s",
+            extensions=None,
+        ),
+        in_file=dict(
+            argstr="%s",
+            extensions=None,
+            mandatory=True,
+            position=1,
+        ),
+        in_transform=dict(
+            argstr="%s",
+            extensions=None,
+            mandatory=True,
+            position=0,
+        ),
+        nthreads=dict(
+            argstr="-nthreads %d",
+            nohash=True,
+        ),
+        out_bval=dict(
+            extensions=None,
+        ),
+        out_bvec=dict(
+            argstr="-export_grad_fsl %s %s",
+            extensions=None,
+        ),
+        out_transform=dict(
+            argstr="%s",
+            extensions=None,
+            mandatory=True,
+            position=-1,
+            usedefault=True,
+        ),
+        reference=dict(
+            argstr="%s",
+            extensions=None,
+            mandatory=True,
+            position=2,
+        ),
+    )
+    inputs = TransformFSLConvert.input_spec()
+
+    for key, metadata in list(input_map.items()):
+        for metakey, value in list(metadata.items()):
+            assert getattr(inputs.traits()[key], metakey) == value
+
+
+def test_TransformFSLConvert_outputs():
+    output_map = dict(
+        out_transform=dict(
+            extensions=None,
+        ),
+    )
+    outputs = TransformFSLConvert.output_spec()
+
+    for key, metadata in list(output_map.items()):
+        for metakey, value in list(metadata.items()):
+            assert getattr(outputs.traits()[key], metakey) == value