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FSL FNIRT: ensure txt intensity map file exists
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nipype/interfaces/fsl/tests/test_preprocess.py

Lines changed: 5 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -406,6 +406,10 @@ def test_fnirt(setup_flirt):
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fnirt.inputs.in_file = infile
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fnirt.inputs.ref_file = reffile
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infile_basename = fsl.FNIRT.intensitymap_file_basename(infile)
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infile_txt = '%s.txt' % infile_basename
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# doing this to create the file to pass tests for file existence
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with open(infile_txt, 'w'):
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pass
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# test files
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opt_map = [
@@ -414,7 +418,7 @@ def test_fnirt(setup_flirt):
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('in_intensitymap_file', '--intin=%s' % infile_basename, [infile]),
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('in_intensitymap_file',
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'--intin=%s' % infile_basename,
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[infile, '%s.txt' % infile_basename]),
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[infile, infile_txt]),
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('config_file', '--config=%s' % infile, infile),
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('refmask_file', '--refmask=%s' % infile, infile),
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('inmask_file', '--inmask=%s' % infile, infile),

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