|
35 | 35 | - docker/Dockerfile.base-pruned
|
36 | 36 | - docker/get_base_image.sh
|
37 | 37 |
|
38 |
| - build_images: |
| 38 | + test_pytest: |
39 | 39 | machine:
|
40 | 40 | # Ubuntu 14.04 with Docker 17.10.0-ce
|
41 | 41 | image: circleci/classic:201710-02
|
@@ -100,35 +100,6 @@ jobs:
|
100 | 100 | --build-arg VERSION="${CIRCLE_TAG}-py27" /home/circleci/nipype \
|
101 | 101 | && e=0 && break || sleep 15
|
102 | 102 | done && [ "$e" -eq "0" ]
|
103 |
| - - run: |
104 |
| - name: Save Docker images to workspace |
105 |
| - no_output_timeout: 60m |
106 |
| - command: | |
107 |
| - docker save nipype/nipype:base \ |
108 |
| - nipype/nipype:latest \ |
109 |
| - nipype/nipype:py27 \ |
110 |
| - nipype/nipype:py36 | gzip -1 > /tmp/docker/nipype-base-latest-py36-py27.tar.gz \ |
111 |
| - && du -h /tmp/docker/nipype-base-latest-py36-py27.tar.gz |
112 |
| - - persist_to_workspace: |
113 |
| - root: /tmp |
114 |
| - paths: |
115 |
| - - docker/* |
116 |
| - |
117 |
| - test_pytest: |
118 |
| - machine: |
119 |
| - # Ubuntu 14.04 with Docker 17.10.0-ce |
120 |
| - image: circleci/classic:201710-02 |
121 |
| - working_directory: /home/circleci/nipype |
122 |
| - steps: |
123 |
| - - attach_workspace: |
124 |
| - at: /tmp |
125 |
| - - run: |
126 |
| - name: Load saved Docker images. |
127 |
| - no_output_timeout: 60m |
128 |
| - command: | |
129 |
| - docker load < /tmp/docker/nipype-base-latest-py36-py27.tar.gz |
130 |
| - - checkout: |
131 |
| - path: /home/circleci/nipype |
132 | 103 | - run:
|
133 | 104 | name: Get codecov
|
134 | 105 | command: |
|
@@ -166,15 +137,50 @@ jobs:
|
166 | 137 | image: circleci/classic:201710-02
|
167 | 138 | working_directory: /home/circleci/nipype
|
168 | 139 | steps:
|
| 140 | + - checkout: |
| 141 | + path: /home/circleci/nipype |
169 | 142 | - attach_workspace:
|
170 | 143 | at: /tmp
|
171 | 144 | - run:
|
172 |
| - name: Load saved Docker images. |
| 145 | + name: Generate Dockerfiles |
| 146 | + command: | |
| 147 | + make gen-dockerfiles |
| 148 | + - run: |
| 149 | + name: Modify Nipype version if necessary |
| 150 | + command: | |
| 151 | + if [ "$CIRCLE_TAG" != "" ]; then |
| 152 | + sed -i -E "s/(__version__ = )'[A-Za-z0-9.-]+'/\1'$CIRCLE_TAG'/" nipype/info.py |
| 153 | + fi |
| 154 | + - run: |
| 155 | + name: Get base image (pull or build) |
173 | 156 | no_output_timeout: 60m
|
174 | 157 | command: |
|
175 |
| - docker load < /tmp/docker/nipype-base-latest-py36-py27.tar.gz |
176 |
| - - checkout: |
177 |
| - path: /home/circleci/nipype |
| 158 | + source /tmp/docker/get_base_image.sh |
| 159 | + if [ "$GET_BASE" == "PULL" ]; then |
| 160 | + echo "Pulling base image ..." |
| 161 | + docker pull nipype/nipype:base |
| 162 | + elif [ "$GET_BASE" == "BUILD" ]; then |
| 163 | + e=1 && for i in {1..5}; do |
| 164 | + docker build -t nipype/nipype:base - < docker/Dockerfile.base && e=0 && break || sleep 15 |
| 165 | + done && [ "$e" -eq "0" ] |
| 166 | + else |
| 167 | + echo "Error: method to get base image not understood" |
| 168 | + exit 1 |
| 169 | + fi |
| 170 | + - run: |
| 171 | + name: Build main image (py36) |
| 172 | + no_output_timeout: 60m |
| 173 | + command: | |
| 174 | + e=1 && for i in {1..5}; do |
| 175 | + docker build \ |
| 176 | + --rm=false \ |
| 177 | + --tag nipype/nipype:latest \ |
| 178 | + --tag nipype/nipype:py36 \ |
| 179 | + --build-arg BUILD_DATE="$(date -u +"%Y-%m-%dT%H:%M:%SZ")" \ |
| 180 | + --build-arg VCS_REF="$(git rev-parse --short HEAD)" \ |
| 181 | + --build-arg VERSION="${CIRCLE_TAG}" /home/circleci/nipype \ |
| 182 | + && e=0 && break || sleep 15 |
| 183 | + done && [ "$e" -eq "0" ] |
178 | 184 | - run:
|
179 | 185 | name: Get codecov
|
180 | 186 | command: |
|
@@ -215,15 +221,50 @@ jobs:
|
215 | 221 | image: circleci/classic:201710-02
|
216 | 222 | working_directory: /home/circleci/nipype
|
217 | 223 | steps:
|
| 224 | + - checkout: |
| 225 | + path: /home/circleci/nipype |
218 | 226 | - attach_workspace:
|
219 | 227 | at: /tmp
|
220 | 228 | - run:
|
221 |
| - name: Load saved Docker images. |
| 229 | + name: Generate Dockerfiles |
| 230 | + command: | |
| 231 | + make gen-dockerfiles |
| 232 | + - run: |
| 233 | + name: Modify Nipype version if necessary |
| 234 | + command: | |
| 235 | + if [ "$CIRCLE_TAG" != "" ]; then |
| 236 | + sed -i -E "s/(__version__ = )'[A-Za-z0-9.-]+'/\1'$CIRCLE_TAG'/" nipype/info.py |
| 237 | + fi |
| 238 | + - run: |
| 239 | + name: Get base image (pull or build) |
222 | 240 | no_output_timeout: 60m
|
223 | 241 | command: |
|
224 |
| - docker load < /tmp/docker/nipype-base-latest-py36-py27.tar.gz |
225 |
| - - checkout: |
226 |
| - path: /home/circleci/nipype |
| 242 | + source /tmp/docker/get_base_image.sh |
| 243 | + if [ "$GET_BASE" == "PULL" ]; then |
| 244 | + echo "Pulling base image ..." |
| 245 | + docker pull nipype/nipype:base |
| 246 | + elif [ "$GET_BASE" == "BUILD" ]; then |
| 247 | + e=1 && for i in {1..5}; do |
| 248 | + docker build -t nipype/nipype:base - < docker/Dockerfile.base && e=0 && break || sleep 15 |
| 249 | + done && [ "$e" -eq "0" ] |
| 250 | + else |
| 251 | + echo "Error: method to get base image not understood" |
| 252 | + exit 1 |
| 253 | + fi |
| 254 | + - run: |
| 255 | + name: Build main image (py36) |
| 256 | + no_output_timeout: 60m |
| 257 | + command: | |
| 258 | + e=1 && for i in {1..5}; do |
| 259 | + docker build \ |
| 260 | + --rm=false \ |
| 261 | + --tag nipype/nipype:latest \ |
| 262 | + --tag nipype/nipype:py36 \ |
| 263 | + --build-arg BUILD_DATE="$(date -u +"%Y-%m-%dT%H:%M:%SZ")" \ |
| 264 | + --build-arg VCS_REF="$(git rev-parse --short HEAD)" \ |
| 265 | + --build-arg VERSION="${CIRCLE_TAG}" /home/circleci/nipype \ |
| 266 | + && e=0 && break || sleep 15 |
| 267 | + done && [ "$e" -eq "0" ] |
227 | 268 | - run:
|
228 | 269 | name: Get codecov
|
229 | 270 | command: |
|
@@ -262,15 +303,65 @@ jobs:
|
262 | 303 | image: circleci/classic:201710-02
|
263 | 304 | working_directory: /home/circleci/nipype
|
264 | 305 | steps:
|
| 306 | + - checkout: |
| 307 | + path: /home/circleci/nipype |
265 | 308 | - attach_workspace:
|
266 | 309 | at: /tmp
|
267 | 310 | - run:
|
268 |
| - name: Load saved Docker images. |
| 311 | + name: Generate Dockerfiles |
| 312 | + command: | |
| 313 | + make gen-dockerfiles |
| 314 | + - run: |
| 315 | + name: Modify Nipype version if necessary |
| 316 | + command: | |
| 317 | + if [ "$CIRCLE_TAG" != "" ]; then |
| 318 | + sed -i -E "s/(__version__ = )'[A-Za-z0-9.-]+'/\1'$CIRCLE_TAG'/" nipype/info.py |
| 319 | + fi |
| 320 | + - run: |
| 321 | + name: Get base image (pull or build) |
269 | 322 | no_output_timeout: 60m
|
270 | 323 | command: |
|
271 |
| - docker load < /tmp/docker/nipype-base-latest-py36-py27.tar.gz |
272 |
| - - checkout: |
273 |
| - path: /home/circleci/nipype |
| 324 | + source /tmp/docker/get_base_image.sh |
| 325 | + if [ "$GET_BASE" == "PULL" ]; then |
| 326 | + echo "Pulling base image ..." |
| 327 | + docker pull nipype/nipype:base |
| 328 | + elif [ "$GET_BASE" == "BUILD" ]; then |
| 329 | + e=1 && for i in {1..5}; do |
| 330 | + docker build -t nipype/nipype:base - < docker/Dockerfile.base && e=0 && break || sleep 15 |
| 331 | + done && [ "$e" -eq "0" ] |
| 332 | + else |
| 333 | + echo "Error: method to get base image not understood" |
| 334 | + exit 1 |
| 335 | + fi |
| 336 | + - run: |
| 337 | + name: Build main image (py36) |
| 338 | + no_output_timeout: 60m |
| 339 | + command: | |
| 340 | + e=1 && for i in {1..5}; do |
| 341 | + docker build \ |
| 342 | + --rm=false \ |
| 343 | + --tag nipype/nipype:latest \ |
| 344 | + --tag nipype/nipype:py36 \ |
| 345 | + --build-arg BUILD_DATE="$(date -u +"%Y-%m-%dT%H:%M:%SZ")" \ |
| 346 | + --build-arg VCS_REF="$(git rev-parse --short HEAD)" \ |
| 347 | + --build-arg VERSION="${CIRCLE_TAG}" /home/circleci/nipype \ |
| 348 | + && e=0 && break || sleep 15 |
| 349 | + done && [ "$e" -eq "0" ] |
| 350 | + - run: |
| 351 | + name: Build main image (py27) |
| 352 | + no_output_timeout: 60m |
| 353 | + command: | |
| 354 | + e=1 && for i in {1..5}; do |
| 355 | + docker build \ |
| 356 | + --rm=false \ |
| 357 | + --tag nipype/nipype:py27 \ |
| 358 | + --build-arg PYTHON_VERSION_MAJOR=2 \ |
| 359 | + --build-arg PYTHON_VERSION_MINOR=7 \ |
| 360 | + --build-arg BUILD_DATE="$(date -u +"%Y-%m-%dT%H:%M:%SZ")" \ |
| 361 | + --build-arg VCS_REF="$(git rev-parse --short HEAD)" \ |
| 362 | + --build-arg VERSION="${CIRCLE_TAG}-py27" /home/circleci/nipype \ |
| 363 | + && e=0 && break || sleep 15 |
| 364 | + done && [ "$e" -eq "0" ] |
274 | 365 | - run:
|
275 | 366 | name: Get codecov
|
276 | 367 | command: |
|
@@ -302,6 +393,19 @@ jobs:
|
302 | 393 | bash /home/circleci/nipype/.circleci/test_py2_fmri_spm_nested_multiproc_l2.sh
|
303 | 394 | - store_artifacts:
|
304 | 395 | path: /home/circleci/work/tests
|
| 396 | + - run: |
| 397 | + name: Save Docker images to workspace |
| 398 | + no_output_timeout: 60m |
| 399 | + command: | |
| 400 | + docker save nipype/nipype:base \ |
| 401 | + nipype/nipype:latest \ |
| 402 | + nipype/nipype:py27 \ |
| 403 | + nipype/nipype:py36 | gzip -1 > /tmp/docker/nipype-base-latest-py36-py27.tar.gz \ |
| 404 | + && du -h /tmp/docker/nipype-base-latest-py36-py27.tar.gz |
| 405 | + - persist_to_workspace: |
| 406 | + root: /tmp |
| 407 | + paths: |
| 408 | + - docker/* |
305 | 409 |
|
306 | 410 | deploy:
|
307 | 411 | docker:
|
@@ -340,21 +444,18 @@ workflows:
|
340 | 444 | build_test_deploy:
|
341 | 445 | jobs:
|
342 | 446 | - compare_base_dockerfiles
|
343 |
| - - build_images: |
344 |
| - requires: |
345 |
| - - compare_base_dockerfiles |
346 | 447 | - test_pytest:
|
347 | 448 | requires:
|
348 |
| - - build_images |
| 449 | + - compare_base_dockerfiles |
349 | 450 | - test_py3_fmri_fsl_spm:
|
350 | 451 | requires:
|
351 |
| - - build_images |
| 452 | + - compare_base_dockerfiles |
352 | 453 | - test_py3_fmri_spm_dartel_linear:
|
353 | 454 | requires:
|
354 |
| - - build_images |
| 455 | + - compare_base_dockerfiles |
355 | 456 | - test_fmri_spm_nested_multiproc:
|
356 | 457 | requires:
|
357 |
| - - build_images |
| 458 | + - compare_base_dockerfiles |
358 | 459 | - deploy:
|
359 | 460 | filters:
|
360 | 461 | branches:
|
|
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