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fix: dcm2niix flag in sorted order
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nipype/interfaces/dcm2nii.py

Lines changed: 6 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -235,6 +235,7 @@ class Dcm2niixOutputSpec(TraitedSpec):
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class Dcm2niix(CommandLine):
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"""Uses Chris Rorden's dcm2niix to convert dicom files
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Examples
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========
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>>> from nipype.interfaces.dcm2nii import Dcm2niix
@@ -243,8 +244,12 @@ class Dcm2niix(CommandLine):
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>>> converter.inputs.compress = 'i'
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>>> converter.inputs.single_file = True
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>>> converter.inputs.output_dir = '.'
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>>> converter.cmdline
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>>> converter.cmdline # doctest: +SKIP
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'dcm2niix -b y -z i -x n -t n -m n -f %t%p -o . -s y -v n functional_1.dcm'
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>>> flags = '-'.join([val.strip() + ' ' for val in sorted(' '.join(converter.cmdline.split()[1:-1]).split('-'))])
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>>> flags
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' -b y -f %t%p -m n -o . -s y -t n -v n -x n -z i '
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"""
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input_spec = Dcm2niixInputSpec

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