@@ -54,7 +54,7 @@ environment variable is not set, some FreeSurfer related tests will fail.
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If any of the tests failed, please report them on our `bug tracker
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<http://github.com/nipy/nipype/issues> `_.
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- On Debian systems with a local copy of MATLAB installed, set the following
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+ On Debian systems with a local copy of MATLAB installed, set the following
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environment variable before running tests::
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export MATLABCMD=$pathtomatlabdir/bin/$platform/MATLAB
@@ -74,8 +74,8 @@ A few tests in Nipype make use of some images distributed within the `FSL course
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<http://fsl.fmrib.ox.ac.uk/fslcourse/> `_. This reduced version of the package can be downloaded `here
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<https://files.osf.io/v1/resources/nefdp/providers/osfstorage/57f472cf9ad5a101f977ecfe> `_.
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To enable the tests depending on these data, just unpack the targz file and set the :code: `FSL_COURSE_DATA ` environment
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- variable to point to that folder.
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- Note, that the test execution time can increase significantly with these additional tests.
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+ variable to point to that folder.
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+ Note, that the test execution time can increase significantly with these additional tests.
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Xfailed tests
@@ -87,14 +87,14 @@ Some tests are expect to fail until the code will be changed or for other reason
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Testing Nipype using Docker
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---------------------------
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- Nipype is tested inside Docker containers and users can use nipype images to test local versions.
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+ Nipype is tested inside Docker containers and users can use nipype images to test local versions.
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First, install the `Docker Engine <https://docs.docker.com/engine/installation/ >`_.
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Nipype has one base docker image called nipype/nipype:base, that contains several useful tools
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(FreeSurfer, AFNI, FSL, ANTs, etc.), and additional test images
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for specific Python versions: py27 for Python 2.7 and py36 for Python 3.6.
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Users can pull the nipype image for Python 3.6 as follows::
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-
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+
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docker pull nipype/nipype:py36
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In order to test a local version of nipype you can run test within container as follows::
@@ -105,5 +105,5 @@ In order to test a local version of nipype you can run test within container as
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Additional comments
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-------------------
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- If the project is tested both on your local OS and within a Docker container, you might have to remove all
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+ If the project is tested both on your local OS and within a Docker container, you might have to remove all
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``__pycache__ `` directories before switching between your OS and a container.
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