Merge pull request #960 from nipy/rel/3.2.0

REL: 3.2.0

Author: effigies

.mailmap

@@ -36,21 +36,28 @@ Gael Varoquaux <gael.varoquaux@normalesup.org> GaelVaroquaux <gael.varoquaux@nor
 Gregory R. Lee <grlee77@gmail.com> Gregory R. Lee <gregory.lee@cchmc.org>
 Ian Nimmo-Smith <iannimmosmith@gmail.com> Ian Nimmo-Smith <ian.nimmo-smith@mrc-cbu.cam.ac.uk>
 Jaakko Leppäkangas <jaeilepp@student.jyu.fi> jaeilepp <jaeilepp@student.jyu.fi>
+Jakub Kaczmarzyk <jakub.kaczmarzyk@gmail.com>
+Jakub Kaczmarzyk <jakub.kaczmarzyk@gmail.com> <jakubk@mit.edu>
 Jasper J.F. van den Bosch <japsai@gmail.com> Jasper <japsai@gmail.com>
 Jean-Baptiste Poline <jbpoline@gmail.com> jbpoline <jbpoline@gmail.com>
 Jon Haitz Legarreta <jon.haitz.legarreta@gmail.com> Jon Haitz Legarreta Gorroño <jon.haitz.legarreta@gmail.com>
+Jonathan Daniel <jonathand655@gmail.com>
+Jonathan Daniel <jonathand655@gmail.com> <36337649+jond01@users.noreply.github.com>
 Kesshi Jordan <Kesshi.Jordan@ucsf.edu> kesshijordan <Kesshi.Jordan@ucsf.edu>
 Kevin S. Hahn <kevinshahn@gmail.com> Kevin S. Hahn <kshahn@stanford.edu>
 Konstantinos Raktivan <constracti@gmail.com> constracti <constracti@gmail.com>
 Krish Subramaniam <krish.subramaniam@gmail.com> Krish Subramaniam <krish@monster.nmr.mgh.harvard.edu>
 Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com>
 Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <chrisgo@google.com>
 Marc-Alexandre Côté <marc.cote.19@gmail.com> Marc-Alexandre Cote <marc.cote.19@gmail.com>
-Mathias Goncalves <mathiasg@mit.edu> mathiasg <mathiasg@mit.edu>
+Mathias Goncalves <mathiasg@mit.edu>
+Mathias Goncalves <mathiasg@mit.edu> <mathiasg@stanford.edu>
 Matthew Cieslak <mattcieslak@gmail.com> Matt Cieslak <mattcieslak@gmail.com>
 Michael Hanke <michael.hanke@gmail.com> <mhanke-guest@82381867-18eb-0310-98a2-9474e637aba2>
 Michael Hanke <michael.hanke@gmail.com> <michaelhanke@mvpa1.dartmouth.edu>
-Michiel Cottaar <MichielCottaar@protonmail.com> Michiel Cottaar <MichielCottaar@protonmail.ch>
+Michiel Cottaar <MichielCottaar@protonmail.com>
+Michiel Cottaar <MichielCottaar@protonmail.com> <MichielCottaar@protonmail.ch>
+Michiel Cottaar <MichielCottaar@protonmail.com> <MichielCottaar@gmail.com>
 Ly Nguyen <nguyen60@seattleu.edu> lxn2 <lxn2@uw.edu>
 Oliver P. Hinds <ohinds@gmail.com> ohinds <ohinds@gmail.com>
 Or Duek <orduek@gmail.com>

.zenodo.json

@@ -48,16 +48,16 @@
       "name": "Cottaar, Michiel",
       "orcid": "0000-0003-4679-7724"
     },
-    {
-      "affiliation": "MIT, HMS",
-      "name": "Ghosh, Satrajit",
-      "orcid": "0000-0002-5312-6729"
-    },
     {
       "affiliation": "University of Washington: Seattle, WA, United States",
       "name": "Larson, Eric",
       "orcid": "0000-0003-4782-5360"
     },
+    {
+      "affiliation": "MIT, HMS",
+      "name": "Ghosh, Satrajit",
+      "orcid": "0000-0002-5312-6729"
+    },
     {
       "affiliation": "Athena EPI, Inria Sophia-Antipolis",
       "name": "Wassermann, Demian",
@@ -95,6 +95,9 @@
     {
       "name": "Duek, Or"
     },
+    {
+      "name": "Daniel, Jonathan"
+    },
     {
       "affiliation": "The University of Washington eScience Institute",
       "name": "Rokem, Ariel",
@@ -104,10 +107,10 @@
       "name": "Madison, Cindee"
     },
     {
-      "name": "Morency, F\u00e9lix C."
+      "name": "Moloney, Brendan"
     },
     {
-      "name": "Moloney, Brendan"
+      "name": "Morency, F\u00e9lix C."
     },
     {
       "affiliation": "MIT",
@@ -167,6 +170,9 @@
       "name": "Raamana, Pradeep Reddy",
       "orcid": "0000-0003-4662-0558"
     },
+    {
+      "name": "Klug, Julian"
+    },
     {
       "affiliation": "SRI International",
       "name": "Nichols, B. Nolan",
@@ -195,6 +201,11 @@
     {
       "name": "Koudoro, Serge"
     },
+    {
+      "affiliation": "University College London",
+      "name": "P\u00e9rez-Garc\u00eda, Fernando",
+      "orcid": "0000-0001-9090-3024"
+    },
     {
       "name": "Oosterhof, Nikolaas N."
     },
@@ -282,16 +293,14 @@
       "name": "Thirion, Bertrand",
       "orcid": "0000-0001-5018-7895"
     },
+    {
+      "name": "Gauthier, Carl"
+    },
     {
       "affiliation": "CEA",
       "name": "Papadopoulos Orfanos, Dimitri",
       "orcid": "0000-0002-1242-8990"
     },
-    {
-      "affiliation": "University College London",
-      "name": "P\u00e9rez-Garc\u00eda, Fernando",
-      "orcid": "0000-0001-9090-3024"
-    },
     {
       "name": "Solovey, Igor"
     },
@@ -315,6 +324,9 @@
       "affiliation": "National Technical University of Athens, Greece",
       "name": "Raktivan, Konstantinos"
     },
+    {
+      "name": "Cal\u00e1bkov\u00e1, Mark\u00e9ta"
+    },
     {
       "affiliation": "Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg, Erlangen, Germany",
       "name": "Fischer, Peter",

Changelog

@@ -25,6 +25,60 @@ Eric Larson (EL), Demian Wassermann, Stephan Gerhard and Ross Markello (RM).
 
 References like "pr/298" refer to github pull request numbers.
 
+3.2.0 (Tuesday 20 October 2020)
+==============================
+
+New feature release in the 3.2.x series.
+
+New features
+------------
+* ``nib-stats`` CLI tool to expose new ``nibabel.imagestats`` API. Initial
+  implementation of volume calculations, a la ``fslstats -V``. (Julian Klug,
+  reviewed by CM and GitHub user 0rC0)
+* ``nib-roi`` CLI tool to crop images and/or flip axes (pr/947) (CM, reviewed
+  by Chris Cheng and Mathias Goncalves)
+* Parser for Siemens "ASCCONV" text format (pr/896) (Brendan Moloney and MB,
+  reviewed by CM)
+
+Enhancements
+------------
+* Drop confusing mention of ``img.to_filename()`` in getting started guide
+  (pr/946) (Fernando Pérez-Garcia, reviewed by MB, CM)
+* Implement ``to_bytes()``/``from_bytes()`` methods for ``Cifti2Image``
+  (pr/938) (CM, reviewed by Mathias Goncalves)
+* Clean up of DICOM documentation (pr/910) (Jonathan Daniel, reviewed by MB)
+
+Bug fixes
+---------
+* Use canvas manager API to set title in ``OrthoSlicer3D`` (pr/958) (EL,
+  reviewed by CM)
+* Record units as seconds parrec2nii; previously set TR to seconds but
+  retained msec units (pr/931) (CM, reviewed by MB)
+* Reflect on-disk dimensions in NIfTI-2 view of CIFTI-2 images (pr/930)
+  (Mathias Goncalves and CM)
+* Fix outdated Python 2 and Sympy code in DICOM derivations (pr/911) (MB,
+  reviewed by CM)
+* Change string with invalid escape to raw string (pr/909) (EL, reviewed
+  by MB)
+
+Maintenance
+-----------
+* Fix typo in docs (pr/955) (Carl Gauthier, reviewed by CM)
+* Purge nose from nisext tests (pr/934) (Markéta Calábková, reviewed by CM)
+* Suppress expected warnings in tests (pr/949) (CM, reviewed by Dorota
+  Jarecka)
+* Various cleanups and modernizations (pr/916, pr/917, pr/918, pr/919)
+  (Jonathan Daniel, reviewed by CM)
+* SVG logo for improved appearance in with zooming (pr/914) (Jonathan Daniel,
+  reviewed by CM)
+
+API changes and deprecations
+----------------------------
+* Drop support for Numpy < 1.13 (pr/922) (CM)
+* Warn on use of ``onetime.setattr_on_read``, which has been a deprecated
+  alias of ``auto_attr`` (pr/948) (CM, reviewed by Ariel Rokem)
+
+
 3.1.1 (Friday 26 June 2020)
 ===========================
 

doc/source/index.rst

@@ -110,6 +110,10 @@ contributed code and discussion (in rough order of appearance):
 * Roberto Guidotti
 * Or Duek
 * Anibal Sólon
+* Jonathan Daniel
+* Markéta Calábková
+* Carl Gauthier
+* Julian Klug
 
 License reprise
 ===============

doc/source/installation.rst

@@ -84,7 +84,7 @@ Requirements
 .. check these against setup.cfg
 
 *  Python_ 3.6 or greater
-*  NumPy_ 1.13 or greater
+*  NumPy_ 1.14 or greater
 *  Packaging_ 14.3 or greater
 *  SciPy_ (optional, for full SPM-ANALYZE support)
 *  h5py_ (optional, for MINC2 support)