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lines changed Original file line number Diff line number Diff line change @@ -59,7 +59,7 @@ To run the Mindboggle jupyter notebook tutorial, first install the Mindboggle
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Docker container (see below) and enter the bash shell of the container
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from your $HOST (e.g., /Users/arno)::
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- docker run --rm -ti -v $HOST:/home/jovyan/work -p 8888:8888 --entrypoint=/neurodocker/startup.sh nipy/mindboggle
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+ docker run --rm -ti -v $HOST:/home/jovyan/work -p 8888:8888 nipy/mindboggle
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Then run the notebook from within the container::
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@@ -133,7 +133,7 @@ on the cortical surfaces and in the cortical and non-cortical volumes
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1. Enter the Docker container's bash shell to run ``recon-all ``,
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``antsCorticalThickness.sh ``, and ``mindboggle `` commands::
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- docker run --rm -ti -v $HOST:$DOCK --entrypoint=/neurodocker/startup.sh nipy/mindboggle
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+ docker run --rm -ti -v $HOST:$DOCK nipy/mindboggle
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2. Recommended: reset environment variables as above within the Docker container::
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@@ -219,7 +219,7 @@ Visualize output
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------------------------------------------------------------------------------
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To visualize Mindboggle output with roygbiv, start the Docker image with::
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- docker run --rm -ti -v $HOST:$DOCK -p 5000:5000 --entrypoint /bin/bash nipy/mindboggle
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+ docker run --rm -ti -v $HOST:$DOCK -p 5000:5000 nipy/mindboggle
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and then inside the image, run roygbiv on an output directory::
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