diff --git a/.github/workflows/ci.yml b/.github/workflows/cicd.yml similarity index 52% rename from .github/workflows/ci.yml rename to .github/workflows/cicd.yml index b4d0c35..97df165 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/cicd.yml @@ -23,7 +23,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - python-version: [ 3.7, 3.8 ] + python-version: [ '3.7', '3.10' ] steps: - uses: actions/checkout@v2 @@ -35,7 +35,35 @@ jobs: uses: actions/setup-python@v2 with: python-version: ${{ matrix.python-version }} + - name: Pre-commit Checks + run: | + pip -q install pre-commit + pre-commit run --all-files - name: Start from clean state run: make clean - name: Run tests run: make PYTHON3=python check + + # Build the binary wheel as well as the source tar + - name: Build Objects + run: | + pip install -q twine wheel + python setup.py sdist bdist_wheel + + # Ensure the objects were packaged correctly and there wasn't an issue with + # the compilation or packaging process. + - name: Check Objects + run: twine check dist/* + + # Upload the packages on all develop and main pipleines for test consumption + - name: Upload HTML Docs + uses: actions/upload-artifact@v2 + with: + name: packages + path: ./dist/ + + # If this commit is the result of a Git tag, push the wheel and tar packages + # to the PyPi registry + - name: Publish to PyPI + if: startsWith(github.ref, 'refs/tags') + run: twine upload --repository-url https://upload.pypi.org/legacy/ -u __token__ -p ${{ secrets.PYPI_API_TOKEN }} --skip-existing --verbose dist/* diff --git a/.gitignore b/.gitignore index f45a3b3..2a4c981 100644 --- a/.gitignore +++ b/.gitignore @@ -2,6 +2,7 @@ *.swp .DS_Store .idea/ +.venv-pre-commit/ __pycache__ build/ case_utils.egg-info/ diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 0000000..8bf5f39 --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,5 @@ +repos: +- repo: https://github.com/psf/black + rev: 22.3.0 + hooks: + - id: black diff --git a/CONTRIBUTE.md b/CONTRIBUTE.md index c7f9787..2e73b90 100644 --- a/CONTRIBUTE.md +++ b/CONTRIBUTE.md @@ -33,3 +33,14 @@ make check git commit -m "Build CASE 0.6.0 monolithic .ttl files" case_utils/ontology/case-0.6.0-subclasses.ttl case_utils/ontology/case-0.6.0.ttl git commit -m "Update CASE ontology pointer to version 0.6.0" dependencies/CASE case_utils/ontology/version_info.py ``` + +This project uses [the `pre-commit` tool](https://pre-commit.com/) for linting The easiest way to install it is with `pip`: +```bash +pip install pre-commit +pre-commit --version +``` + +The `pre-commit` tool hooks into Git's commit machinery to run a set of linters and static analyzers over each change. To install `pre-commit` into Git's hooks, run: +```bash +pre-commit install +``` \ No newline at end of file diff --git a/LICENSE b/LICENSE index af2e9a3..d9a10c0 100644 --- a/LICENSE +++ b/LICENSE @@ -1,23 +1,176 @@ -NIST Software - -This software was developed by employees of the National Institute of Standards -and Technology (NIST), an agency of the Federal Government and is being made -available as a public service. Pursuant to title 17 United States Code Section -105, works of NIST employees are not subject to copyright protection in the -United States. This software may be subject to foreign copyright. 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However, in accepting such obligations, You may act only + on Your own behalf and on Your sole responsibility, not on behalf + of any other Contributor, and only if You agree to indemnify, + defend, and hold each Contributor harmless for any liability + incurred by, or claims asserted against, such Contributor by reason + of your accepting any such warranty or additional liability. + + END OF TERMS AND CONDITIONS diff --git a/Makefile b/Makefile index faf4d2f..896b5cf 100644 --- a/Makefile +++ b/Makefile @@ -21,7 +21,8 @@ $(error Unable to determine CASE version) endif all: \ - .ontology.done.log + .ontology.done.log \ + .venv-pre-commit/var/.pre-commit-built.log .PHONY: \ download @@ -54,8 +55,32 @@ all: \ test -r case_utils/ontology/case-$(case_version)-subclasses.ttl touch $@ +# This virtual environment is meant to be built once and then persist, even through 'make clean'. +# If a recipe is written to remove this flag file, it should first run `pre-commit uninstall`. +.venv-pre-commit/var/.pre-commit-built.log: + rm -rf .venv-pre-commit + test -r .pre-commit-config.yaml \ + || (echo "ERROR:Makefile:pre-commit is expected to install for this repository, but .pre-commit-config.yaml does not seem to exist." >&2 ; exit 1) + $(PYTHON3) -m venv \ + .venv-pre-commit + source .venv-pre-commit/bin/activate \ + && pip install \ + --upgrade \ + pip \ + setuptools \ + wheel + source .venv-pre-commit/bin/activate \ + && pip install \ + pre-commit + source .venv-pre-commit/bin/activate \ + && pre-commit install + mkdir -p \ + .venv-pre-commit/var + touch $@ + check: \ - .ontology.done.log + .ontology.done.log \ + .venv-pre-commit/var/.pre-commit-built.log $(MAKE) \ PYTHON3=$(PYTHON3) \ --directory tests \ diff --git a/README.md b/README.md index 551633b..6271ecc 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,6 @@ # CASE Python Utilities -This project provides various specialized utilities for producing data in the [CASE](https://caseontology.org/) format. +This project provides various specialized utilities for producing and analyzing data in the [CASE](https://caseontology.org/) format. ## Disclaimer @@ -10,12 +10,28 @@ Participation by NIST in the creation of the documentation of mentioned software ## Installation +This repository can be installed from PyPI or from source. + + +### Installing from PyPI + +```bash +pip install case_utils +``` + +Users who wish to install from PyPI should be aware that while CASE's ontology is in its pre-1.0.0 release state, backwards-incompatible ontology changes may occur. This may manifest as [`case_validate`](#case_validate) reporting data review errors after installing an updated `case_utils` version. Users may wish to pin `case_utils` within any dependent code bases to be less than the next unreleased SEMVER-minor version. (E.g. if `case_utils` version `0.8.0` is currently available, a newly adopting project might wish to track `case_utils<0.9.0` among its dependencies.) + + +### Installing from source + +Users who wish to install pre-release versions and/or make improvements to the code base should install in this manner. + 1. Clone this repository. 2. (Optional) Create and activate a virtual environment. 3. (Optional) Upgrade `pip` with `pip install --upgrade pip`. (This can speed installation of some dependent packages.) -4. Run `pip install .`. +4. Run `pip install $x`, where `$x` is the path to the cloned repository. -Installation is demonstrated in the `.venv.done.log` target of the `tests/` directory's [`Makefile`](tests/Makefile). +Local installation is demonstrated in the `.venv.done.log` target of the `tests/` directory's [`Makefile`](tests/Makefile). ## Usage @@ -136,3 +152,10 @@ Some `make` targets are defined for this repository: * `check` - Run unit tests. * `clean` - Remove test build files, but not downloaded files. * `download` - Download files sufficiently to run the unit tests offline. This will *not* include the ontology repositories tracked as submodules. Note if you do need to work offline, be aware touching the `setup.cfg` file in the project root directory, or `tests/requirements.txt`, will trigger a virtual environment rebuild. + + +## Licensing + +This repository is licensed under the Apache 2.0 License. See [LICENSE](LICENSE). + +Portions of this repository contributed by NIST are governed by the [NIST Software Licensing Statement](THIRD_PARTY_LICENSES.md#nist-software-licensing-statement). diff --git a/README_PyPI.md b/README_PyPI.md new file mode 100644 index 0000000..ad292dd --- /dev/null +++ b/README_PyPI.md @@ -0,0 +1,5 @@ +# CASE Python Utilities + +This project provides various specialized utilities for producing and analyzing data in the [CASE](https://caseontology.org/) format. + +Full documentation is available at the [project homepage](https://github.com/casework/CASE-Utilities-Python). diff --git a/THIRD_PARTY_LICENSES.md b/THIRD_PARTY_LICENSES.md new file mode 100644 index 0000000..ad89f2d --- /dev/null +++ b/THIRD_PARTY_LICENSES.md @@ -0,0 +1,39 @@ +Portions of this repository contributed by NIST are governed by +the following license. + + +# NIST Software Licensing Statement + +NIST-developed software is provided by NIST as a public service. +You may use, copy, and distribute copies of the software in any +medium, provided that you keep intact this entire notice. You may +improve, modify, and create derivative works of the software or +any portion of the software, and you may copy and distribute such +modifications or works. Modified works should carry a notice +stating that you changed the software and should note the date +and nature of any such change. Please explicitly acknowledge the +National Institute of Standards and Technology as the source of +the software. + +NIST-developed software is expressly provided "AS IS." NIST MAKES +NO WARRANTY OF ANY KIND, EXPRESS, IMPLIED, IN FACT, OR ARISING BY +OPERATION OF LAW, INCLUDING, WITHOUT LIMITATION, THE IMPLIED +WARRANTY OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, +NON-INFRINGEMENT, AND DATA ACCURACY. NIST NEITHER REPRESENTS NOR +WARRANTS THAT THE OPERATION OF THE SOFTWARE WILL BE UNINTERRUPTED +OR ERROR-FREE, OR THAT ANY DEFECTS WILL BE CORRECTED. NIST DOES +NOT WARRANT OR MAKE ANY REPRESENTATIONS REGARDING THE USE OF THE +SOFTWARE OR THE RESULTS THEREOF, INCLUDING BUT NOT LIMITED TO THE +CORRECTNESS, ACCURACY, RELIABILITY, OR USEFULNESS OF THE +SOFTWARE. + +You are solely responsible for determining the appropriateness of +using and distributing the software and you assume all risks +associated with its use, including but not limited to the risks +and costs of program errors, compliance with applicable laws, +damage to or loss of data, programs or equipment, and the +unavailability or interruption of operation. This software is not +intended to be used in any situation where a failure could cause +risk of injury or damage to property. The software developed by +NIST employees is not subject to copyright protection within the +United States. diff --git a/case_utils/__init__.py b/case_utils/__init__.py index efa0766..e8bc7ac 100644 --- a/case_utils/__init__.py +++ b/case_utils/__init__.py @@ -11,6 +11,6 @@ # # We would appreciate acknowledgement if the software is used. -__version__ = "0.4.0" +__version__ = "0.5.0" from . import local_uuid diff --git a/case_utils/case_file/__init__.py b/case_utils/case_file/__init__.py index 63dfef4..61e2bb7 100644 --- a/case_utils/case_file/__init__.py +++ b/case_utils/case_file/__init__.py @@ -15,10 +15,12 @@ This module creates a graph object that provides a basic UCO characterization of a single file. The gathered metadata is among the more "durable" file characteristics, i.e. characteristics that would remain consistent when transferring a file between locations. """ -__version__ = "0.3.0" +__version__ = "0.3.1" +import argparse import datetime import hashlib +import logging import os import typing import warnings @@ -26,20 +28,10 @@ import rdflib # type: ignore import case_utils +from case_utils.namespace import * DEFAULT_PREFIX = "http://example.org/kb/" -NS_RDF = rdflib.RDF -NS_UCO_CORE = rdflib.Namespace("https://ontology.unifiedcyberontology.org/uco/core/") -NS_UCO_OBSERVABLE = rdflib.Namespace( - "https://ontology.unifiedcyberontology.org/uco/observable/" -) -NS_UCO_TYPES = rdflib.Namespace("https://ontology.unifiedcyberontology.org/uco/types/") -NS_UCO_VOCABULARY = rdflib.Namespace( - "https://ontology.unifiedcyberontology.org/uco/vocabulary/" -) -NS_XSD = rdflib.XSD - # Shortcut syntax for defining an immutable named tuple is noted here: # https://docs.python.org/3/library/typing.html#typing.NamedTuple # via the "See also" box here: https://docs.python.org/3/library/collections.html#collections.namedtuple @@ -217,10 +209,9 @@ def create_file_node( def main() -> None: - import argparse - parser = argparse.ArgumentParser() parser.add_argument("--base-prefix", default=DEFAULT_PREFIX) + parser.add_argument("--debug", action="store_true") parser.add_argument("--disable-hashes", action="store_true") parser.add_argument("--disable-mtime", action="store_true") parser.add_argument( @@ -230,6 +221,8 @@ def main() -> None: parser.add_argument("in_file") args = parser.parse_args() + logging.basicConfig(level=logging.DEBUG if args.debug else logging.INFO) + case_utils.local_uuid.configure() NS_BASE = rdflib.Namespace(args.base_prefix) diff --git a/case_utils/local_uuid.py b/case_utils/local_uuid.py index 7e526c0..dd1e6cb 100644 --- a/case_utils/local_uuid.py +++ b/case_utils/local_uuid.py @@ -15,22 +15,93 @@ This library is a wrapper for uuid, provided to generate repeatable UUIDs if requested. """ -__version__ = "0.2.0" +__version__ = "0.3.0" +import logging import os +import pathlib import sys +import typing +import warnings import uuid -USE_DEMO_UUID: bool = False +DEMO_UUID_BASE: typing.Optional[str] = None DEMO_UUID_COUNTER: int = 0 +_logger = logging.getLogger(pathlib.Path(__file__).name) + def configure() -> None: - global USE_DEMO_UUID + global DEMO_UUID_BASE if os.getenv("DEMO_UUID_REQUESTING_NONRANDOM") == "NONRANDOM_REQUESTED": - USE_DEMO_UUID = True + warnings.warn( + "Environment variable DEMO_UUID_REQUESTING_NONRANDOM is deprecated. See case_utils.local_uuid.demo_uuid for usage notes on its replacement, CASE_DEMO_NONRANDOM_UUID_BASE. Proceeding with random UUIDs.", + DeprecationWarning, + ) + return + + env_base_dir_name = os.getenv("CASE_DEMO_NONRANDOM_UUID_BASE") + if env_base_dir_name is None: + return + + base_dir_original_path = pathlib.Path(env_base_dir_name) + if not base_dir_original_path.exists(): + warnings.warn( + "Environment variable CASE_DEMO_NONRANDOM_UUID_BASE is expected to refer to an existing directory. Proceeding with random UUIDs." + ) + return + if not base_dir_original_path.is_dir(): + warnings.warn( + "Environment variable CASE_DEMO_NONRANDOM_UUID_BASE is expected to refer to a directory. Proceeding with random UUIDs." + ) + return + + # Component: An emphasis this is an example. + demo_uuid_base_parts = ["example.org"] + + # Component: Present working directory, relative to CASE_DEMO_NONRANDOM_UUID_BASE if that environment variable is an ancestor of pwd. + base_dir_resolved_path = base_dir_original_path.resolve() + srcdir_original_path = pathlib.Path(os.getcwd()) + srcdir_resolved_path = srcdir_original_path.resolve() + # _logger.debug("base_dir_resolved_path = %r.", base_dir_resolved_path) + # _logger.debug("srcdir_resolved_path = %r.", srcdir_resolved_path) + try: + srcdir_relative_path = srcdir_resolved_path.relative_to(base_dir_resolved_path) + # _logger.debug("srcdir_relative_path = %r.", srcdir_relative_path) + demo_uuid_base_parts.append(str(srcdir_relative_path)) + except ValueError: + # If base_dir is not an ancestor directory of srcdir, default to srcdir. + # _logger.debug("PWD is not relative to base path.") + demo_uuid_base_parts.append(str(srcdir_resolved_path)) + + # Component: Command of argument vector. + env_venv_name = os.getenv("VIRTUAL_ENV") + if env_venv_name is None: + demo_uuid_base_parts.append(sys.argv[0]) + else: + command_original_path = pathlib.Path(sys.argv[0]) + command_resolved_path = command_original_path.resolve() + venv_original_path = pathlib.Path(env_venv_name) + venv_resolved_path = venv_original_path.resolve() + try: + command_relative_path = command_resolved_path.relative_to( + venv_resolved_path + ) + # _logger.debug("command_relative_path = %r.", command_relative_path) + demo_uuid_base_parts.append(str(command_relative_path)) + except ValueError: + # _logger.debug("Command path is not relative to virtual environment path.") + demo_uuid_base_parts.append(str(command_resolved_path)) + + if len(sys.argv) > 1: + # Component: Arguments of argument vector. + demo_uuid_base_parts.extend(sys.argv[1:]) + + # _logger.debug("demo_uuid_base_parts = %r.", demo_uuid_base_parts) + + DEMO_UUID_BASE = "/".join(demo_uuid_base_parts) def demo_uuid() -> str: @@ -39,29 +110,25 @@ def demo_uuid() -> str: WARNING: This function was developed for use ONLY for reducing (but not eliminating) version-control edits to identifiers in sample data. It creates UUIDs that are decidedly NOT random, and should remain consistent on repeated calls to the importing script. - To prevent accidental non-random UUID usage, an environment variable must be set to an uncommon string, hard-coded in this function. + To prevent accidental non-random UUID usage, an environment variable must be set to a string provided by the caller. The variable's required value is the path to some directory. The variable's recommended value is the equivalent of the Make variable "top_srcdir" - that is, the root directory of the containing Git repository, some parent of the current process's current working directory. """ + global DEMO_UUID_BASE global DEMO_UUID_COUNTER - if os.getenv("DEMO_UUID_REQUESTING_NONRANDOM") != "NONRANDOM_REQUESTED": - raise EnvironmentError( - "demo_uuid() called without DEMO_UUID_REQUESTING_NONRANDOM in environment." + if os.getenv("CASE_DEMO_NONRANDOM_UUID_BASE") is None: + raise ValueError( + "demo_uuid() called without CASE_DEMO_NONRANDOM_UUID_BASE in environment." ) - # Component: An emphasis this is an example. - parts = ["example.org"] + if DEMO_UUID_BASE is None: + raise ValueError("demo_uuid() called with DEMO_UUID_BASE unset.") + + parts = [DEMO_UUID_BASE] # Component: Incrementing counter. DEMO_UUID_COUNTER += 1 parts.append(str(DEMO_UUID_COUNTER)) - # Component: Present working directory, replacing $HOME with '~'. - env_HOME: str = os.getenv("HOME", "/nonexistent") - parts.append(os.getcwd().replace(env_HOME, "~")) - - # Component: Argument vector. - parts.extend(sys.argv) - return str(uuid.uuid5(uuid.NAMESPACE_URL, "/".join(parts))) @@ -69,8 +136,8 @@ def local_uuid() -> str: """ Generate either a UUID4, or if requested via environment configuration, a non-random demo UUID. """ - global USE_DEMO_UUID - if USE_DEMO_UUID: - return demo_uuid() - else: + global DEMO_UUID_BASE + if DEMO_UUID_BASE is None: return str(uuid.uuid4()) + else: + return demo_uuid() diff --git a/case_utils/namespace.py b/case_utils/namespace.py new file mode 100644 index 0000000..6e12322 --- /dev/null +++ b/case_utils/namespace.py @@ -0,0 +1,62 @@ +#!/usr/bin/env python3 + +# This software was developed at the National Institute of Standards +# and Technology by employees of the Federal Government in the course +# of their official duties. Pursuant to title 17 Section 105 of the +# United States Code this software is not subject to copyright +# protection and is in the public domain. NIST assumes no +# responsibility whatsoever for its use by other parties, and makes +# no guarantees, expressed or implied, about its quality, +# reliability, or any other characteristic. +# +# We would appreciate acknowledgement if the software is used. + +""" +This module provides importable constants for namespaces. + +To use, add "from case_utils.namespace import *". Namespace variables starting with "NS_" are imported. As needs are demonstrated in CASE tooling (both in case_utils and from downstream requests), namespaces will also be imported from rdflib for a consistent "NS_*" spelling. +""" + +__version__ = "0.1.0" + +import rdflib # type: ignore + +NS_SH = rdflib.SH +NS_RDF = rdflib.RDF +NS_XSD = rdflib.XSD + +NS_CASE_INVESTIGATION = rdflib.Namespace( + "https://ontology.caseontology.org/case/investigation/" +) +NS_CASE_VOCABULARY = rdflib.Namespace( + "https://ontology.caseontology.org/case/vocabulary/" +) +NS_UCO_ACTION = rdflib.Namespace( + "https://ontology.unifiedcyberontology.org/uco/action/" +) +NS_UCO_CORE = rdflib.Namespace("https://ontology.unifiedcyberontology.org/uco/core/") +NS_UCO_IDENTITY = rdflib.Namespace( + "https://ontology.unifiedcyberontology.org/uco/identity/" +) +NS_UCO_LOCATION = rdflib.Namespace( + "https://ontology.unifiedcyberontology.org/uco/location/" +) +NS_UCO_MARKING = rdflib.Namespace( + "https://ontology.unifiedcyberontology.org/uco/marking/" +) +NS_UCO_OBSERVABLE = rdflib.Namespace( + "https://ontology.unifiedcyberontology.org/uco/observable/" +) +NS_UCO_PATTERN = rdflib.Namespace( + "https://ontology.unifiedcyberontology.org/uco/pattern/" +) +NS_UCO_ROLE = rdflib.Namespace("https://ontology.unifiedcyberontology.org/uco/role/") +NS_UCO_TIME = rdflib.Namespace("https://ontology.unifiedcyberontology.org/uco/time/") +NS_UCO_TOOL = rdflib.Namespace("https://ontology.unifiedcyberontology.org/uco/tool/") +NS_UCO_TYPES = rdflib.Namespace("https://ontology.unifiedcyberontology.org/uco/types/") +NS_UCO_VICTIM = rdflib.Namespace( + "https://ontology.unifiedcyberontology.org/uco/victim/" +) +NS_UCO_VOCABULARY = rdflib.Namespace( + "https://ontology.unifiedcyberontology.org/uco/vocabulary/" +) diff --git a/setup.cfg b/setup.cfg index 6b94050..d8a7051 100644 --- a/setup.cfg +++ b/setup.cfg @@ -4,15 +4,17 @@ version = attr: case_utils.__version__ author = Alex Nelson author_email = alexander.nelson@nist.gov description = Python utilities for working with the CASE ontology -# TODO - PyPI will need a differently-written README. -long_description = file: README.md +long_description = file: README_PyPI.md long_description_content_type = text/markdown url = https://github.com/casework/CASE-Utilities-Python classifiers = Development Status :: 4 - Beta - License :: Public Domain + License :: OSI Approved :: Apache Software License Operating System :: OS Independent Programming Language :: Python :: 3 +license_files = + LICENSE + THIRD_PARTY_LICENSES.md [options] include_package_data = true diff --git a/tests/Makefile b/tests/Makefile index 327c1ab..b75a75a 100644 --- a/tests/Makefile +++ b/tests/Makefile @@ -67,17 +67,6 @@ check: \ --ignore case_utils \ --log-level=DEBUG -# TODO - Need to settle on policy for incorporating this and 'format' recipe into CI. -# https://case.atlassian.net/browse/AC-215 -# https://case.atlassian.net/browse/AC-216 -check-black: \ - .venv.done.log - source venv/bin/activate \ - && black \ - --check \ - $(top_srcdir)/case_utils \ - $$PWD - check-case_utils: \ .venv.done.log $(MAKE) \ @@ -114,13 +103,3 @@ clean: download: \ .venv.done.log - -# TODO - Need to settle on policy for incorporating this and 'check-black' recipe into CI. -# https://case.atlassian.net/browse/AC-215 -# https://case.atlassian.net/browse/AC-216 -format: \ - .venv.done.log - source venv/bin/activate \ - && black \ - $(top_srcdir)/case_utils \ - $$PWD diff --git a/tests/case_utils/case_file/Makefile b/tests/case_utils/case_file/Makefile index c3edca4..0ce744a 100644 --- a/tests/case_utils/case_file/Makefile +++ b/tests/case_utils/case_file/Makefile @@ -111,11 +111,13 @@ sample.txt.json: \ $(tests_srcdir)/src/isomorphic_diff.py \ $(top_srcdir)/case_utils/case_file/__init__.py \ $(top_srcdir)/case_utils/local_uuid.py \ + $(top_srcdir)/case_utils/namespace.py \ sample.txt-nocompact.json rm -f $@ _$@ __$@ - export DEMO_UUID_REQUESTING_NONRANDOM=NONRANDOM_REQUESTED \ + export CASE_DEMO_NONRANDOM_UUID_BASE="$(top_srcdir)" \ && source $(tests_srcdir)/venv/bin/activate \ && case_file \ + --debug \ __$@ \ sample.txt source $(tests_srcdir)/venv/bin/activate \ @@ -142,11 +144,13 @@ sample.txt.ttl: \ $(tests_srcdir)/.venv.done.log \ $(top_srcdir)/case_utils/case_file/__init__.py \ $(top_srcdir)/case_utils/local_uuid.py \ + $(top_srcdir)/case_utils/namespace.py \ sample.txt.done.log rm -f _$@ __$@ - export DEMO_UUID_REQUESTING_NONRANDOM=NONRANDOM_REQUESTED \ + export CASE_DEMO_NONRANDOM_UUID_BASE="$(top_srcdir)" \ && source $(tests_srcdir)/venv/bin/activate \ && case_file \ + --debug \ __$@ \ sample.txt java -jar $(RDF_TOOLKIT_JAR) \ @@ -164,11 +168,13 @@ sample.txt-disable_hashes.ttl: \ $(tests_srcdir)/.venv.done.log \ $(top_srcdir)/case_utils/case_file/__init__.py \ $(top_srcdir)/case_utils/local_uuid.py \ + $(top_srcdir)/case_utils/namespace.py \ sample.txt.done.log rm -f _$@ __$@ - export DEMO_UUID_REQUESTING_NONRANDOM=NONRANDOM_REQUESTED \ + export CASE_DEMO_NONRANDOM_UUID_BASE="$(top_srcdir)" \ && source $(tests_srcdir)/venv/bin/activate \ && case_file \ + --debug \ --disable-hashes \ __$@ \ sample.txt @@ -188,11 +194,13 @@ sample.txt-nocompact.json: \ $(tests_srcdir)/src/isomorphic_diff.py \ $(top_srcdir)/case_utils/case_file/__init__.py \ $(top_srcdir)/case_utils/local_uuid.py \ + $(top_srcdir)/case_utils/namespace.py \ sample.txt.done.log rm -f _$@ - export DEMO_UUID_REQUESTING_NONRANDOM=NONRANDOM_REQUESTED \ + export CASE_DEMO_NONRANDOM_UUID_BASE="$(top_srcdir)" \ && source $(tests_srcdir)/venv/bin/activate \ && case_file \ + --debug \ _$@ \ sample.txt # To avoid making noisy, uninformative updates from blank node identifiers, only move the new file into place if it is not isomorphic with the Git-tracked version of the target. diff --git a/tests/case_utils/case_file/kb.json b/tests/case_utils/case_file/kb.json index 5b7100d..b968377 100644 --- a/tests/case_utils/case_file/kb.json +++ b/tests/case_utils/case_file/kb.json @@ -9,7 +9,23 @@ }, "@graph": [ { - "@id": "kb:file-1080c4cc-7886-5a52-bac1-f6a2b16c0ddb", + "@id": "kb:file-800784de-5c9e-5eb2-b843-0ac51a1bd4b9", + "@type": "uco-observable:File", + "uco-core:hasFacet": { + "@type": "uco-observable:FileFacet", + "uco-observable:fileName": "sample.txt", + "uco-observable:modifiedTime": { + "@type": "xsd:dateTime", + "@value": "2010-01-02T03:04:56+00:00" + }, + "uco-observable:sizeInBytes": { + "@type": "xsd:integer", + "@value": "4" + } + } + }, + { + "@id": "kb:file-ace6460a-92a9-58b9-83ea-a18ae87f6e04", "@type": "uco-observable:File", "uco-core:hasFacet": [ { @@ -78,22 +94,6 @@ } } ] - }, - { - "@id": "kb:file-b5e8a943-c556-5964-a618-8f0d000822af", - "@type": "uco-observable:File", - "uco-core:hasFacet": { - "@type": "uco-observable:FileFacet", - "uco-observable:fileName": "sample.txt", - "uco-observable:modifiedTime": { - "@type": "xsd:dateTime", - "@value": "2010-01-02T03:04:56+00:00" - }, - "uco-observable:sizeInBytes": { - "@type": "xsd:integer", - "@value": "4" - } - } } ] } \ No newline at end of file diff --git a/tests/case_utils/case_file/kb.ttl b/tests/case_utils/case_file/kb.ttl index 6241217..942249b 100644 --- a/tests/case_utils/case_file/kb.ttl +++ b/tests/case_utils/case_file/kb.ttl @@ -8,7 +8,17 @@ @prefix uco-vocabulary: . @prefix xsd: . -kb:file-1080c4cc-7886-5a52-bac1-f6a2b16c0ddb +kb:file-800784de-5c9e-5eb2-b843-0ac51a1bd4b9 + a uco-observable:File ; + uco-core:hasFacet [ + a uco-observable:FileFacet ; + uco-observable:fileName "sample.txt" ; + uco-observable:modifiedTime "2010-01-02T03:04:56+00:00"^^xsd:dateTime ; + uco-observable:sizeInBytes "4"^^xsd:integer ; + ] ; + . + +kb:file-ace6460a-92a9-58b9-83ea-a18ae87f6e04 a uco-observable:File ; uco-core:hasFacet [ @@ -46,13 +56,3 @@ kb:file-1080c4cc-7886-5a52-bac1-f6a2b16c0ddb ; . -kb:file-b5e8a943-c556-5964-a618-8f0d000822af - a uco-observable:File ; - uco-core:hasFacet [ - a uco-observable:FileFacet ; - uco-observable:fileName "sample.txt" ; - uco-observable:modifiedTime "2010-01-02T03:04:56+00:00"^^xsd:dateTime ; - uco-observable:sizeInBytes "4"^^xsd:integer ; - ] ; - . - diff --git a/tests/case_utils/case_file/sample.txt-disable_hashes.ttl b/tests/case_utils/case_file/sample.txt-disable_hashes.ttl index 669aa51..edea5af 100644 --- a/tests/case_utils/case_file/sample.txt-disable_hashes.ttl +++ b/tests/case_utils/case_file/sample.txt-disable_hashes.ttl @@ -6,7 +6,7 @@ @prefix uco-observable: . @prefix xsd: . -kb:file-b5e8a943-c556-5964-a618-8f0d000822af +kb:file-800784de-5c9e-5eb2-b843-0ac51a1bd4b9 a uco-observable:File ; uco-core:hasFacet [ a uco-observable:FileFacet ; diff --git a/tests/case_utils/case_file/sample.txt-nocompact.json b/tests/case_utils/case_file/sample.txt-nocompact.json index e71f43a..e848ebf 100644 --- a/tests/case_utils/case_file/sample.txt-nocompact.json +++ b/tests/case_utils/case_file/sample.txt-nocompact.json @@ -35,19 +35,19 @@ }, "@graph": [ { - "@id": "http://example.org/kb/file-2999db3b-5e66-53b2-8470-8bfd838c444e", + "@id": "http://example.org/kb/file-23f45d80-7b16-5e7f-ba34-40392fa4f8fc", "@type": "https://ontology.unifiedcyberontology.org/uco/observable/File", "https://ontology.unifiedcyberontology.org/uco/core/hasFacet": [ { - "@id": "_:Nf16b91a8337843bfa9e99cbcceca4fea" + "@id": "_:N7b4f54f0f233497a8981441323dfdd27" }, { - "@id": "_:Ne9cc5032d4804fa19a3fe75c4966febf" + "@id": "_:Nf3c8a77cca9e4807a8b016f8b94eae64" } ] }, { - "@id": "_:Nf16b91a8337843bfa9e99cbcceca4fea", + "@id": "_:N7b4f54f0f233497a8981441323dfdd27", "@type": "https://ontology.unifiedcyberontology.org/uco/observable/FileFacet", "https://ontology.unifiedcyberontology.org/uco/observable/fileName": "sample.txt", "https://ontology.unifiedcyberontology.org/uco/observable/modifiedTime": { @@ -57,26 +57,26 @@ "https://ontology.unifiedcyberontology.org/uco/observable/sizeInBytes": 4 }, { - "@id": "_:Ne9cc5032d4804fa19a3fe75c4966febf", + "@id": "_:Nf3c8a77cca9e4807a8b016f8b94eae64", "@type": "https://ontology.unifiedcyberontology.org/uco/observable/ContentDataFacet", "https://ontology.unifiedcyberontology.org/uco/observable/hash": [ { - "@id": "_:N4074d88aa360403285b8cda26cfc74f2" + "@id": "_:N32345c071afb41eb8e4ac36497356af8" }, { - "@id": "_:N801158ea2716484791001371f60d5b60" + "@id": "_:N8f2e8439e67c4ae4b5d6dcf7947cf57a" }, { - "@id": "_:N550b15454d234888abb56ef4a1eb62a6" + "@id": "_:N94114772034d4c7f9ea8a7ce77a3b848" }, { - "@id": "_:N4a33b783148c43bd9bda1c04c581ea7c" + "@id": "_:Ndc9c78f6e42e4c96a9015ba58f3e8b3b" } ], "https://ontology.unifiedcyberontology.org/uco/observable/sizeInBytes": 4 }, { - "@id": "_:N4074d88aa360403285b8cda26cfc74f2", + "@id": "_:N32345c071afb41eb8e4ac36497356af8", "@type": "https://ontology.unifiedcyberontology.org/uco/types/Hash", "https://ontology.unifiedcyberontology.org/uco/types/hashMethod": { "@type": "https://ontology.unifiedcyberontology.org/uco/vocabulary/HashNameVocab", @@ -88,7 +88,7 @@ } }, { - "@id": "_:N801158ea2716484791001371f60d5b60", + "@id": "_:N8f2e8439e67c4ae4b5d6dcf7947cf57a", "@type": "https://ontology.unifiedcyberontology.org/uco/types/Hash", "https://ontology.unifiedcyberontology.org/uco/types/hashMethod": { "@type": "https://ontology.unifiedcyberontology.org/uco/vocabulary/HashNameVocab", @@ -100,7 +100,7 @@ } }, { - "@id": "_:N550b15454d234888abb56ef4a1eb62a6", + "@id": "_:N94114772034d4c7f9ea8a7ce77a3b848", "@type": "https://ontology.unifiedcyberontology.org/uco/types/Hash", "https://ontology.unifiedcyberontology.org/uco/types/hashMethod": { "@type": "https://ontology.unifiedcyberontology.org/uco/vocabulary/HashNameVocab", @@ -112,7 +112,7 @@ } }, { - "@id": "_:N4a33b783148c43bd9bda1c04c581ea7c", + "@id": "_:Ndc9c78f6e42e4c96a9015ba58f3e8b3b", "@type": "https://ontology.unifiedcyberontology.org/uco/types/Hash", "https://ontology.unifiedcyberontology.org/uco/types/hashMethod": { "@type": "https://ontology.unifiedcyberontology.org/uco/vocabulary/HashNameVocab", diff --git a/tests/case_utils/case_file/sample.txt.json b/tests/case_utils/case_file/sample.txt.json index b656d00..2539324 100644 --- a/tests/case_utils/case_file/sample.txt.json +++ b/tests/case_utils/case_file/sample.txt.json @@ -35,19 +35,19 @@ }, "@graph": [ { - "@id": "kb:file-44aa82fe-a733-5892-8daa-7a28378d6afc", + "@id": "kb:file-789a91ef-6446-548c-9911-dcc5168f25ea", "@type": "uco-observable:File", "uco-core:hasFacet": [ { - "@id": "_:N86dc036c736c420684afd0e2cdea35e8" + "@id": "_:N9cb3cc2ab59546a3a8409b0a43beb4c3" }, { - "@id": "_:N30cc9a3cb8d741c3896d6ff81ae053f6" + "@id": "_:N34067c06b9364c50870f642861cac333" } ] }, { - "@id": "_:N86dc036c736c420684afd0e2cdea35e8", + "@id": "_:N9cb3cc2ab59546a3a8409b0a43beb4c3", "@type": "uco-observable:FileFacet", "uco-observable:fileName": "sample.txt", "uco-observable:modifiedTime": { @@ -57,26 +57,26 @@ "uco-observable:sizeInBytes": 4 }, { - "@id": "_:N30cc9a3cb8d741c3896d6ff81ae053f6", + "@id": "_:N34067c06b9364c50870f642861cac333", "@type": "uco-observable:ContentDataFacet", "uco-observable:hash": [ { - "@id": "_:Ncdaad817bed0440cb8df78ea13bca979" + "@id": "_:N8536d3196ade4a33898077091ffe7b37" }, { - "@id": "_:Nb29e43af29e74e30af823ba2ac7fc826" + "@id": "_:Nee102c2e670c450b9c7bfe532916631a" }, { - "@id": "_:Nad4c18c5ea3a45589ee33d98134f4f6e" + "@id": "_:N874bad97d6e94943a23d04234517307f" }, { - "@id": "_:N3a34ed3719864b4fbd9e6da88ae97d54" + "@id": "_:Nb1f22efd766f43768fc83a2183df2396" } ], "uco-observable:sizeInBytes": 4 }, { - "@id": "_:Ncdaad817bed0440cb8df78ea13bca979", + "@id": "_:N8536d3196ade4a33898077091ffe7b37", "@type": "uco-types:Hash", "uco-types:hashMethod": { "@type": "uco-vocabulary:HashNameVocab", @@ -88,7 +88,7 @@ } }, { - "@id": "_:Nb29e43af29e74e30af823ba2ac7fc826", + "@id": "_:Nee102c2e670c450b9c7bfe532916631a", "@type": "uco-types:Hash", "uco-types:hashMethod": { "@type": "uco-vocabulary:HashNameVocab", @@ -100,7 +100,7 @@ } }, { - "@id": "_:Nad4c18c5ea3a45589ee33d98134f4f6e", + "@id": "_:N874bad97d6e94943a23d04234517307f", "@type": "uco-types:Hash", "uco-types:hashMethod": { "@type": "uco-vocabulary:HashNameVocab", @@ -112,7 +112,7 @@ } }, { - "@id": "_:N3a34ed3719864b4fbd9e6da88ae97d54", + "@id": "_:Nb1f22efd766f43768fc83a2183df2396", "@type": "uco-types:Hash", "uco-types:hashMethod": { "@type": "uco-vocabulary:HashNameVocab", diff --git a/tests/case_utils/case_file/sample.txt.ttl b/tests/case_utils/case_file/sample.txt.ttl index 6327640..3bcac8f 100644 --- a/tests/case_utils/case_file/sample.txt.ttl +++ b/tests/case_utils/case_file/sample.txt.ttl @@ -8,7 +8,7 @@ @prefix uco-vocabulary: . @prefix xsd: . -kb:file-1080c4cc-7886-5a52-bac1-f6a2b16c0ddb +kb:file-ace6460a-92a9-58b9-83ea-a18ae87f6e04 a uco-observable:File ; uco-core:hasFacet [ diff --git a/tests/case_utils/case_file/test_case_file.py b/tests/case_utils/case_file/test_case_file.py index 727325b..013f68d 100644 --- a/tests/case_utils/case_file/test_case_file.py +++ b/tests/case_utils/case_file/test_case_file.py @@ -19,18 +19,10 @@ import rdflib.plugins.sparql # type: ignore import case_utils.ontology +from case_utils.namespace import * _logger = logging.getLogger(os.path.basename(__file__)) -NS_RDF = rdflib.RDF - -NS_UCO_CORE = rdflib.Namespace("https://ontology.unifiedcyberontology.org/uco/core/") -NS_UCO_OBSERVABLE = rdflib.Namespace( - "https://ontology.unifiedcyberontology.org/uco/observable/" -) -NS_UCO_TYPES = rdflib.Namespace("https://ontology.unifiedcyberontology.org/uco/types/") - - NSDICT = { "uco-core": NS_UCO_CORE, "uco-observable": NS_UCO_OBSERVABLE, @@ -122,14 +114,14 @@ def test_confirm_mtime( ) n_observable_object = None - for result in graph_case_file_disable_hashes.query(query_confirm_mtime): + for result in graph_case_file_disable_hashes.query(query_object): (n_observable_object,) = result assert ( not n_observable_object is None ), "File object with expected mtime not found in hashless graph." n_observable_object = None - for result in graph_case_file.query(query_confirm_mtime): + for result in graph_case_file.query(query_object): (n_observable_object,) = result assert ( not n_observable_object is None diff --git a/tests/case_utils/test_local_uuid.py b/tests/case_utils/test_local_uuid.py new file mode 100644 index 0000000..c60ed09 --- /dev/null +++ b/tests/case_utils/test_local_uuid.py @@ -0,0 +1,36 @@ +#!/usr/bin/env python3 + +# This software was developed at the National Institute of Standards +# and Technology by employees of the Federal Government in the course +# of their official duties. Pursuant to title 17 Section 105 of the +# United States Code this software is not subject to copyright +# protection and is in the public domain. NIST assumes no +# responsibility whatsoever for its use by other parties, and makes +# no guarantees, expressed or implied, about its quality, +# reliability, or any other characteristic. +# +# We would appreciate acknowledgement if the software is used. + +import os + +import pytest + +import case_utils.local_uuid + + +def test_local_uuid_deprecation(monkeypatch: pytest.MonkeyPatch) -> None: + monkeypatch.setenv("DEMO_UUID_REQUESTING_NONRANDOM", "NONRANDOM_REQUESTED") + with pytest.warns(DeprecationWarning): + case_utils.local_uuid.configure() + + +def test_local_uuid_nondirectory(monkeypatch: pytest.MonkeyPatch) -> None: + monkeypatch.setenv("CASE_DEMO_NONRANDOM_UUID_BASE", "/dev/null") + with pytest.warns(UserWarning): + case_utils.local_uuid.configure() + + +def test_local_uuid_nonexistent(monkeypatch: pytest.MonkeyPatch) -> None: + monkeypatch.setenv("CASE_DEMO_NONRANDOM_UUID_BASE", "/dev/nonexistent") + with pytest.warns(UserWarning): + case_utils.local_uuid.configure() diff --git a/tests/requirements.txt b/tests/requirements.txt index acd3ddc..f913d96 100644 --- a/tests/requirements.txt +++ b/tests/requirements.txt @@ -1,5 +1,4 @@ PyLD -black mypy pytest python-dateutil