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Gatekeeper workaround is no more needed with avrdude linked statically
See: arduino/avrdude-build-script@2db1e51 arduino/avrdude-build-script@960dfb9
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build/build.xml

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@@ -494,11 +494,6 @@
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<fileset dir="${staging_folder}/work/${staging_hardware_folder}/tools" includes="**/bin/*"/>
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<fileset dir="${staging_folder}/work/${staging_hardware_folder}/tools" includes="**/libexec/gcc/avr/4.8.1/*"/>
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</chmod>
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<!-- macosx gatekeeper workaround. See https://github.com/arduino/Arduino/issues/3468 -->
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<chmod perm="-x">
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<fileset dir="${staging_folder}/work/${staging_hardware_folder}/tools" includes="**/bin/avrdude_bin" />
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</chmod>
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</target>
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<target name="macosx-run" depends="build,start"/>

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