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a/pyiceberg/catalog/__init__.py b/pyiceberg/catalog/__init__.py index cf649ba7d6..1030d6df89 100644 --- a/pyiceberg/catalog/__init__.py +++ b/pyiceberg/catalog/__init__.py @@ -809,7 +809,7 @@ def purge_table(self, identifier: Union[str, Identifier]) -> None: manifest_lists_to_delete = set() manifests_to_delete: List[ManifestFile] = [] for snapshot in metadata.snapshots: - manifests_to_delete += snapshot.manifests(io) + manifests_to_delete += snapshot.manifests(table, io) manifest_lists_to_delete.add(snapshot.manifest_list) manifest_paths_to_delete = {manifest.manifest_path for manifest in manifests_to_delete} diff --git a/pyiceberg/manifest.py b/pyiceberg/manifest.py index 61cb87e3d8..86603f1bd6 100644 --- a/pyiceberg/manifest.py +++ b/pyiceberg/manifest.py @@ -22,6 +22,7 @@ from enum import Enum from types import TracebackType from typing import ( + TYPE_CHECKING, Any, Dict, Iterator, @@ -57,6 +58,9 @@ StructType, ) +if TYPE_CHECKING: + from pyiceberg.table.metadata import TableMetadata + UNASSIGNED_SEQ = -1 DEFAULT_BLOCK_SIZE = 67108864 # 64 * 1024 * 1024 DEFAULT_READ_VERSION: Literal[2] = 2 @@ -704,25 +708,85 @@ def fetch_manifest_entry(self, io: FileIO, discard_deleted: bool = True) -> List Returns: An Iterator of manifest entries. """ - input_file = io.new_input(self.manifest_path) - with AvroFile[ManifestEntry]( - input_file, - MANIFEST_ENTRY_SCHEMAS[DEFAULT_READ_VERSION], - read_types={-1: ManifestEntry, 2: DataFile}, - read_enums={0: ManifestEntryStatus, 101: FileFormat, 134: DataFileContent}, - ) as reader: - return [ - _inherit_from_manifest(entry, self) - for entry in reader - if not discard_deleted or entry.status != ManifestEntryStatus.DELETED - ] - - -@cached(cache=LRUCache(maxsize=128), key=lambda io, manifest_list: hashkey(manifest_list)) -def _manifests(io: FileIO, manifest_list: str) -> Tuple[ManifestFile, ...]: + from pyiceberg_core import manifest + + bs = io.new_input(self.manifest_path).open().read() + manifest = manifest.read_manifest_entries(bs) + + # TODO: Don't convert the types + # but this is the easiest for now until we + # have the write part in there as well + def _convert_entry(entry: Any) -> ManifestEntry: + data_file = DataFile( + DataFileContent(entry.data_file.content), + entry.data_file.file_path, + # FileFormat(entry.data_file.file_format), + FileFormat.PARQUET, + entry.data_file.partition, + entry.data_file.record_count, + entry.data_file.file_size_in_bytes, + entry.data_file.column_sizes, + entry.data_file.value_counts, + entry.data_file.null_value_counts, + entry.data_file.nan_value_counts, + entry.data_file.lower_bounds, + entry.data_file.upper_bounds, + entry.data_file.key_metadata, + entry.data_file.split_offsets, + entry.data_file.equality_ids, + entry.data_file.sort_order_id, + ) + + return ManifestEntry( + ManifestEntryStatus(entry.status), + entry.snapshot_id, + entry.sequence_number, + entry.file_sequence_number, + data_file, + ) + + return [ + _inherit_from_manifest(_convert_entry(entry), self) + for entry in manifest.entries() + if not discard_deleted or entry.status != ManifestEntryStatus.DELETED + ] + + +@cached(cache=LRUCache(maxsize=128), key=lambda io, manifest_list, table: hashkey(manifest_list)) +def _manifests(io: FileIO, manifest_list: str, table: "TableMetadata") -> Tuple[ManifestFile, ...]: """Read and cache manifests from the given manifest list, returning a tuple to prevent modification.""" - file = io.new_input(manifest_list) - return tuple(read_manifest_list(file)) + bs = io.new_input(manifest_list).open().read() + from pyiceberg_core import manifest + + def partition_spec(spec_id: int) -> str: + spec = table.specs()[spec_id] + partition_type = spec.partition_type(table.schema()) + struct = Schema(*partition_type.fields).as_struct() + payload = struct.model_dump_json() + return payload + + cb = manifest.PartitionSpecProviderCallbackHolder(partition_spec) + + return tuple( + ManifestFile( + manifest.manifest_path, + manifest.manifest_length, + manifest.partition_spec_id, + manifest.content, + manifest.sequence_number, + manifest.min_sequence_number, + manifest.added_snapshot_id, + manifest.added_files_count, + manifest.existing_files_count, + manifest.deleted_files_count, + manifest.added_rows_count, + manifest.existing_rows_count, + manifest.deleted_rows_count, + manifest.partitions, + manifest.key_metadata, + ) + for manifest in manifest.read_manifest_list(bs, cb).entries() + ) def read_manifest_list(input_file: InputFile) -> Iterator[ManifestFile]: @@ -1093,6 +1157,7 @@ def __init__(self, output_file: OutputFile, snapshot_id: int, parent_snapshot_id "parent-snapshot-id": str(parent_snapshot_id) if parent_snapshot_id is not None else "null", "sequence-number": str(sequence_number), "format-version": "2", + "content": "data", }, ) self._commit_snapshot_id = snapshot_id diff --git a/pyiceberg/table/__init__.py b/pyiceberg/table/__init__.py index 78676a774a..d8ed11fdd2 100644 --- a/pyiceberg/table/__init__.py +++ b/pyiceberg/table/__init__.py @@ -1780,7 +1780,7 @@ def plan_files(self) -> Iterable[FileScanTask]: manifests = [ manifest_file - for manifest_file in snapshot.manifests(self.io) + for manifest_file in snapshot.manifests(self.io, self.table_metadata) if manifest_evaluators[manifest_file.partition_spec_id](manifest_file) ] diff --git a/pyiceberg/table/snapshots.py b/pyiceberg/table/snapshots.py index 8d1a24c420..ad2f8b9016 100644 --- a/pyiceberg/table/snapshots.py +++ b/pyiceberg/table/snapshots.py @@ -252,9 +252,9 @@ def __str__(self) -> str: result_str = f"{operation}id={self.snapshot_id}{parent_id}{schema_id}" return result_str - def manifests(self, io: FileIO) -> List[ManifestFile]: + def manifests(self, io: FileIO, table: TableMetadata) -> List[ManifestFile]: """Return the manifests for the given snapshot.""" - return list(_manifests(io, self.manifest_list)) + return list(_manifests(io, self.manifest_list, table)) class MetadataLogEntry(IcebergBaseModel): diff --git a/pyproject.toml b/pyproject.toml index 3116214f71..8a2c9d5960 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -80,7 +80,7 @@ psycopg2-binary = { version = ">=2.9.6", optional = true } sqlalchemy = { version = "^2.0.18", optional = true } getdaft = { version = ">=0.2.12", optional = true } cachetools = "^5.5.0" -pyiceberg-core = { version = "^0.4.0", optional = true } +pyiceberg-core = { file = "/Users/fokko.driesprong/work/iceberg-rust/bindings/python/dist/pyiceberg_core-0.4.0-cp39-abi3-macosx_11_0_arm64.whl" } polars = { version = "^1.21.0", optional = true } thrift-sasl = { version = ">=0.4.3", optional = true } kerberos = {version = "^1.3.1", optional = true} diff --git a/tests/conftest.py b/tests/conftest.py index 729e29cb0c..109210e1aa 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -61,10 +61,12 @@ ) from pyiceberg.io.fsspec import FsspecFileIO from pyiceberg.manifest import DataFile, FileFormat +from pyiceberg.partitioning import PartitionField, PartitionSpec from pyiceberg.schema import Accessor, Schema from pyiceberg.serializers import ToOutputFile from pyiceberg.table import FileScanTask, Table from pyiceberg.table.metadata import TableMetadataV1, TableMetadataV2 +from pyiceberg.transforms import IdentityTransform from pyiceberg.types import ( BinaryType, BooleanType, @@ -1847,7 +1849,22 @@ def simple_map() -> MapType: @pytest.fixture(scope="session") -def generated_manifest_entry_file(avro_schema_manifest_entry: Dict[str, Any]) -> Generator[str, None, None]: +def test_schema() -> Schema: + return Schema(NestedField(1, "VendorID", IntegerType(), False), NestedField(2, "tpep_pickup_datetime", IntegerType(), False)) + + +@pytest.fixture(scope="session") +def test_partition_spec() -> Schema: + return PartitionSpec( + PartitionField(1, 1000, IdentityTransform(), "VendorID"), + PartitionField(2, 1001, IdentityTransform(), "tpep_pickup_datetime"), + ) + + +@pytest.fixture(scope="session") +def generated_manifest_entry_file( + avro_schema_manifest_entry: Dict[str, Any], test_schema: Schema, test_partition_spec: PartitionSpec +) -> Generator[str, None, None]: from fastavro import parse_schema, writer parsed_schema = parse_schema(avro_schema_manifest_entry) @@ -1855,7 +1872,15 @@ def generated_manifest_entry_file(avro_schema_manifest_entry: Dict[str, Any]) -> with TemporaryDirectory() as tmpdir: tmp_avro_file = tmpdir + "/manifest.avro" with open(tmp_avro_file, "wb") as out: - writer(out, parsed_schema, manifest_entry_records) + writer( + out, + parsed_schema, + manifest_entry_records, + metadata={ + "schema": test_schema.model_dump_json(), + "partition-spec": test_partition_spec.fields, + }, + ) yield tmp_avro_file diff --git a/tests/utils/test_manifest.py b/tests/utils/test_manifest.py index 5740587958..17e83e456f 100644 --- a/tests/utils/test_manifest.py +++ b/tests/utils/test_manifest.py @@ -357,7 +357,7 @@ def test_write_empty_manifest() -> None: @pytest.mark.parametrize("format_version", [1, 2]) def test_write_manifest( - generated_manifest_file_file_v1: str, generated_manifest_file_file_v2: str, format_version: TableVersion + generated_manifest_file_file_v1: str, generated_manifest_file_file_v2: str, format_version: TableVersion, test_schema: Schema ) -> None: io = load_file_io() snapshot = Snapshot( @@ -370,9 +370,6 @@ def test_write_manifest( ) demo_manifest_file = snapshot.manifests(io)[0] manifest_entries = demo_manifest_file.fetch_manifest_entry(io) - test_schema = Schema( - NestedField(1, "VendorID", IntegerType(), False), NestedField(2, "tpep_pickup_datetime", IntegerType(), False) - ) test_spec = PartitionSpec( PartitionField(source_id=1, field_id=1, transform=IdentityTransform(), name="VendorID"), PartitionField(source_id=2, field_id=2, transform=IdentityTransform(), name="tpep_pickup_datetime"),