diff --git a/utbot-intellij-python/src/main/kotlin/org/utbot/intellij/plugin/language/python/PythonDialogProcessor.kt b/utbot-intellij-python/src/main/kotlin/org/utbot/intellij/plugin/language/python/PythonDialogProcessor.kt
index c9b2b57ae2..bc68d871e6 100644
--- a/utbot-intellij-python/src/main/kotlin/org/utbot/intellij/plugin/language/python/PythonDialogProcessor.kt
+++ b/utbot-intellij-python/src/main/kotlin/org/utbot/intellij/plugin/language/python/PythonDialogProcessor.kt
@@ -318,7 +318,11 @@ fun getDirectoriesForSysPath(
             if (element != null) {
                 val directory = element.parent
                 if (directory is PsiDirectory) {
-                    importedPaths.add(directory.virtualFile)
+                    // If we have `import a.b.c` we need to add syspath to module `a` only
+                    val additionalLevel = importTarget.importedQName?.componentCount?.dec() ?: 0
+                    directory.topParent(additionalLevel)?.let { dir ->
+                        importedPaths.add(dir.virtualFile)
+                    }
                 }
             }
         }
@@ -329,7 +333,11 @@ fun getDirectoriesForSysPath(
         importTarget.resolveImportSourceCandidates().forEach {
             val directory = it.parent
             if (directory is PsiDirectory ) {
-                importedPaths.add(directory.virtualFile)
+                // If we have `from a.b.c import d` we need to add syspath to module `a` only
+                val additionalLevel = importTarget.importSourceQName?.componentCount?.dec() ?: 0
+                directory.topParent(additionalLevel)?.let { dir ->
+                    importedPaths.add(dir.virtualFile)
+                }
             }
         }
     }
diff --git a/utbot-intellij-python/src/main/kotlin/org/utbot/intellij/plugin/language/python/Utils.kt b/utbot-intellij-python/src/main/kotlin/org/utbot/intellij/plugin/language/python/Utils.kt
index c8560beadb..0b73c99e9a 100644
--- a/utbot-intellij-python/src/main/kotlin/org/utbot/intellij/plugin/language/python/Utils.kt
+++ b/utbot-intellij-python/src/main/kotlin/org/utbot/intellij/plugin/language/python/Utils.kt
@@ -4,6 +4,7 @@ import com.intellij.openapi.project.Project
 import com.intellij.openapi.roots.ProjectFileIndex
 import com.intellij.openapi.vfs.VfsUtil
 import com.intellij.openapi.vfs.VirtualFile
+import com.intellij.psi.PsiDirectory
 import com.intellij.psi.PsiElement
 import com.jetbrains.python.psi.PyClass
 import com.jetbrains.python.psi.PyDecorator
@@ -55,4 +56,12 @@ fun fineFunction(function: PyFunction): Boolean =
 
 fun fineClass(pyClass: PyClass): Boolean =
     getAncestors(pyClass).dropLast(1).all { it !is PyClass && it !is PyFunction } &&
-            pyClass.methods.any { fineFunction(it) }
\ No newline at end of file
+            pyClass.methods.any { fineFunction(it) }
+
+fun PsiDirectory.topParent(level: Int): PsiDirectory? {
+    var directory: PsiDirectory? = this
+    repeat(level) {
+        directory = directory?.parent
+    }
+    return directory
+}