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README.md

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# GLabViz
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GUI Python apps written in python and qt for quick analysis of custom data. It also includes the ability to convert data to *H5* if need to be analysed in other software such as MATLAB.
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Graphical User Interface (GUI) Python apps written in python using qt and [pyqtgrpah](http://www.pyqtgraph.org/) for quick analysis of scientific data. It also includes the ability to convert data to *H5* if needed.
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_**Python is not required to use GLabViz**_ (see **How to use?**)
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[_**DOWNLOAD HERE**_](https://github.com/SarthakJariwala/Python_GUI_apps/releases)
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[**DOWNLOAD HERE**](https://github.com/SarthakJariwala/Python_GUI_apps/releases)
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The primary users for this Python package application are Ginger Lab members at the University of Washington, Seattle but is licensed under MIT License and open for everyone to use.
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## Includes
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* Fluorescence Lifetime Analysis
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* **Fluorescence Lifetime Analysis**
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* Analyze lifetime
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* Fit data with or without IRF
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* Fit with stretched, single, or double exponential functions by diff_ev or fmin_tnc
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* Calculate surface recombination velocity
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* Export graph and fit results
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* Spectra Analysis
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* **Spectra Analysis**
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* Analyze single spectrum
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* Fit with or without background and white light
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* Fit with single Lorentzian, single Gaussian, double Gaussian, triple Gaussian models
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* Plot fitted scan by pk_pos, fwhm, sigma, or height
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* Export fitted scan
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* .pkl to .txt, .pkl to .h5 converters
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* Fluorescence Lifetime Imaging Microscopy (FLIM) Data Analysis
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* **Fluorescence Lifetime Imaging Microscopy (FLIM) Data Analysis**
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* Load lifetime scans in .h5 or .pkl files
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* Plot histogram intensity sums and analyze PSF
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* Export intensities array and intensities image
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* Plot raw histogram data and analyze lifetime
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* Compare lifetime in two different regions
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* Photluminescence Quantum Efficiency (PLQE) Analysis
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* **Photluminescence Quantum Efficiency (PLQE) Analysis**
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* Plot PLQE data
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* Calculate PLQE
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* UV-Vis Data Analysis
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* **UV-Vis Data Analysis**
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* Plot UV-Vis data
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* Correct UV-Vis data for scattering
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* Plot Tauc data
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* Calculate bandgap
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* Export UV-Vis and Tauc plots
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* General *H5* View and Plot
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* **General *H5* View and Plot**
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* Load .h5 file to view file structure
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* Plot datasets as a graph or an image
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* *H5* and *PKL* File Viewer
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* **H5 and PKL File Viewer**
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* Load .h5 or .pkl file to view file structure
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* Image Analysis
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* **Image Analysis**
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* Load image on SPOT or Pixera settings, or specify pixel size
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* Handle RGB and greyscale images
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* Select magnification
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![Image Analysis](https://github.com/SarthakJariwala/Python_GUI_apps/blob/master/Screenshots/GLabViz_Image_analysis_1.png)
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## How to use?
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### Standalone App - without Python or any dependencies (_only for Windows users_)
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### Standalone App - without Python or any dependencies (_only for Windows users, comming soon for Mac users_)
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* Under the [releases](https://github.com/SarthakJariwala/Python_GUI_apps/releases) page, download the latest release of the _**DataBrowser**_ zip file
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* Extract the zip file and run _**DataBrowser.exe**_
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### With Python and its dependencies
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Screenshots/GLabViz_interface_1.png

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