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Add visualization tutorial transform image (#448)
* [DLMED] add visualization tutorial Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add image Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update notebook Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update notebook Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add reference image Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix PEP error Signed-off-by: Nic Ma <nma@nvidia.com>
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README.md

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Tutorials in this folder demonstrate model visualisation and interpretability features of MONAI. Currently, it consists of class activation mapping and occlusion sensitivity for 3D classification model visualisations and analysis.
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#### [Transfer learning with MMAR](./modules/transfer_mmar.ipynb)
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This tutorial demonstrates a transfer learning pipeline from a pretrained model in [Clara Train's Medical Model Archive format](https://docs.nvidia.com/clara/clara-train-sdk/pt/mmar.html). The notebook also shows the use of LMDB-based dataset.
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#### [Transform visualization](./modules/transform_visualization.ipynb)
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This tutorial shows several visualization approaches for 3D image during transform augmentation.

modules/transform_visualization.ipynb

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runner.sh

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doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" UNet_input_size_constrains.ipynb)
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doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" network_api.ipynb)
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doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" tcia_csv_processing.ipynb)
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doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" transform_visualization.ipynb)
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# output formatting
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separator=""

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