diff --git a/.github/workflows/pr.yml b/.github/workflows/pr.yml index 419a5ba5..2067e24a 100644 --- a/.github/workflows/pr.yml +++ b/.github/workflows/pr.yml @@ -14,10 +14,10 @@ jobs: runs-on: ubuntu-latest steps: - uses: actions/checkout@v2 - - name: Set up Python 3.7 + - name: Set up Python 3.8 uses: actions/setup-python@v2 with: - python-version: "3.7" + python-version: "3.8" - name: Setup Dev Environment run: | pip install virtualenv diff --git a/.readthedocs.yml b/.readthedocs.yml index 9a68f062..83904a20 100644 --- a/.readthedocs.yml +++ b/.readthedocs.yml @@ -18,7 +18,7 @@ sphinx: # Optionally set the version of Python and requirements required to build your docs python: - version: 3.7 + version: "3.8" install: - requirements: docs/requirements.txt # system_packages: true diff --git a/examples/apps/mednist_classifier_monaideploy/mednist_classifier_monaideploy.py b/examples/apps/mednist_classifier_monaideploy/mednist_classifier_monaideploy.py index 8570633e..af301878 100644 --- a/examples/apps/mednist_classifier_monaideploy/mednist_classifier_monaideploy.py +++ b/examples/apps/mednist_classifier_monaideploy/mednist_classifier_monaideploy.py @@ -95,7 +95,7 @@ def compute(self, op_input: InputContext, op_output: OutputContext, context: Exe @md.resource(cpu=1, gpu=1, memory="1Gi") -@md.env(pip_packages=["pydicom >= 2.3.0", "highdicom>=0.18.2", "typeguard~=2.12.1"]) +@md.env(pip_packages=["pydicom >= 2.3.0", "highdicom>=0.18.2"]) # because of the use of DICOM writer operator class App(Application): """Application class for the MedNIST classifier.""" diff --git a/monai/deploy/core/application.py b/monai/deploy/core/application.py index c6261b4d..f8e8f504 100644 --- a/monai/deploy/core/application.py +++ b/monai/deploy/core/application.py @@ -205,13 +205,13 @@ def add_flow( if not io_map: if len(op_output_labels) > 1: raise IOMappingError( - f"The source operator has more than one output port " + "The source operator has more than one output port " f"({', '.join(op_output_labels)}) so mapping should be specified explicitly!" ) if len(op_input_labels) > 1: raise IOMappingError( f"The destination operator has more than one output port ({', '.join(op_input_labels)}) " - f"so mapping should be specified explicitly!" + "so mapping should be specified explicitly!" ) io_map = {"": {""}} @@ -227,7 +227,7 @@ def add_flow( if len(op_output_labels) == 1 and len(output_labels) != 1: raise IOMappingError( f"The source operator({source_op.name}) has only one port with label " - f"'{next(iter(op_output_labels))}' but io_map specifies {len(output_labels)} " + f"{next(iter(op_output_labels))!r} but io_map specifies {len(output_labels)} " f"labels({', '.join(output_labels)}) to the source operator's output port" ) @@ -239,7 +239,7 @@ def add_flow( del io_maps[output_label] break raise IOMappingError( - f"The source operator({source_op.name}) has no output port with label '{output_label}'. " + f"The source operator({source_op.name}) has no output port with label {output_label!r}. " f"It should be one of ({', '.join(op_output_labels)})." ) @@ -250,7 +250,7 @@ def add_flow( if len(op_input_labels) == 1 and len(input_labels) != 1: raise IOMappingError( f"The destination operator({destination_op.name}) has only one port with label " - f"'{next(iter(op_input_labels))}' but io_map specifies {len(input_labels)} " + f"{next(iter(op_input_labels))!r} but io_map specifies {len(input_labels)} " f"labels({', '.join(input_labels)}) to the destination operator's input port" ) @@ -262,8 +262,8 @@ def add_flow( input_labels.add(next(iter(op_input_labels))) break raise IOMappingError( - f"The destination operator({destination_op.name}) has no input port with label '{input_label}'. " - f"It should be one of ({', '.join(op_input_labels)})." + f"The destination operator({destination_op.name}) has no input port with label {input_label!r}." + f" It should be one of ({', '.join(op_input_labels)})." ) self._graph.add_flow(source_op, destination_op, io_maps) diff --git a/monai/deploy/core/domain/datapath.py b/monai/deploy/core/domain/datapath.py index 71d98416..0824cfaf 100644 --- a/monai/deploy/core/domain/datapath.py +++ b/monai/deploy/core/domain/datapath.py @@ -67,10 +67,10 @@ def get(self, name: Optional[str] = "") -> DataPath: return next(iter(self._paths.values())) else: raise IOMappingError( - f"'{name}' is not a valid name. It should be one of ({', '.join(self._paths.keys())})." + f"{name!r} is not a valid name. It should be one of ({', '.join(self._paths.keys())})." ) else: datapath = self._paths.get(name) if not datapath: - raise ItemNotExistsError(f"A DataPath instance for '{name}' does not exist.") + raise ItemNotExistsError(f"A DataPath instance for {name!r} does not exist.") return datapath diff --git a/monai/deploy/core/env.py b/monai/deploy/core/env.py index e49f91ec..513c8306 100644 --- a/monai/deploy/core/env.py +++ b/monai/deploy/core/env.py @@ -37,7 +37,7 @@ def __init__(self, pip_packages: Optional[Union[str, List[str]]] = None): if requirements_path.exists(): pip_packages = requirements_path.read_text().strip().splitlines() # make it a list else: - raise FileNotFoundError(f"The '{requirements_path}' file does not exist!") + raise FileNotFoundError(f"The {requirements_path!r} file does not exist!") self._pip_packages = list(pip_packages or []) diff --git a/monai/deploy/core/io_context.py b/monai/deploy/core/io_context.py index 20852618..75947aaf 100644 --- a/monai/deploy/core/io_context.py +++ b/monai/deploy/core/io_context.py @@ -49,7 +49,7 @@ def get_default_label(self, label: str = "") -> str: label = next(iter(self._labels)) else: raise IOMappingError( - f"'{label}' is not a valid {self._io_kind} of the operator({self._op.name}). " + f"{label!r} is not a valid {self._io_kind} of the operator({self._op.name}). " f"It should be one of ({', '.join(self._labels)})." ) return label @@ -82,7 +82,7 @@ def get(self, label: str = "") -> Any: key = self.get_group_path(f"{self._io_kind}/{label}") storage = self._storage if not storage.exists(key): - raise ItemNotExistsError(f"'{key}' does not exist.") + raise ItemNotExistsError(f"{key!r} does not exist.") return storage.get(key) def set(self, value: Any, label: str = ""): @@ -109,10 +109,10 @@ def set(self, value: Any, label: str = ""): # checking: https://www.python.org/dev/peps/pep-0585/#id15 data_type = self._op_info.get_data_type(self._io_kind, label) try: - check_type("value", value, data_type) + check_type(value, data_type) except TypeError as err: raise IOMappingError( - f"The data type of '{label}' in the {self._io_kind} of '{self._op}' is {data_type}, but the value" + f"The data type of {label!r} in the {self._io_kind} of {self._op!r} is {data_type}, but the value" f" to set is the data type of {type(value)}." ) from err diff --git a/monai/deploy/core/models/model.py b/monai/deploy/core/models/model.py index c9d3aca0..218878dd 100644 --- a/monai/deploy/core/models/model.py +++ b/monai/deploy/core/models/model.py @@ -164,7 +164,7 @@ def get(self, name: str = "") -> "Model": if item: return item else: - raise ItemNotExistsError(f"A model with '{name}' does not exist.") + raise ItemNotExistsError(f"A model with {name!r} does not exist.") else: item_count = len(self._items) if item_count == 1: diff --git a/monai/deploy/core/models/named_model.py b/monai/deploy/core/models/named_model.py index 948522cb..608d56af 100644 --- a/monai/deploy/core/models/named_model.py +++ b/monai/deploy/core/models/named_model.py @@ -83,7 +83,7 @@ def accept(cls, path: str): # 3) Each model folder must contain only one model definition file or folder. if sum(1 for _ in model_folder.iterdir()) != 1: logger.warning( - f"Model repository '{model_folder}' contains more than one model definition file or folder " + f"Model repository {model_folder!r} contains more than one model definition file or folder " "so not treated as NamedModel." ) return False, None diff --git a/monai/deploy/core/resource.py b/monai/deploy/core/resource.py index 982eafac..5cbd8768 100644 --- a/monai/deploy/core/resource.py +++ b/monai/deploy/core/resource.py @@ -64,7 +64,8 @@ def set_resource_limits( self._cpu = cpu_limit else: raise ItemAlreadyExistsError( - f"'cpu' wouldn't be set to {cpu_limit} because it is already set to {self._cpu} by the runtime environment." + f"'cpu' wouldn't be set to {cpu_limit} because it is already set to {self._cpu} by the runtime" + " environment." ) if gpu_limit is not None: @@ -72,7 +73,8 @@ def set_resource_limits( self._gpu = gpu_limit else: raise ItemAlreadyExistsError( - f"'gpu' wouldn't be set to {gpu_limit} because it is already set to {self._gpu} by the runtime environment." + f"'gpu' wouldn't be set to {gpu_limit} because it is already set to {self._gpu} by the runtime" + " environment." ) if type(memory_limit) == str: diff --git a/monai/deploy/operators/dicom_data_loader_operator.py b/monai/deploy/operators/dicom_data_loader_operator.py index 60937661..9dda1807 100644 --- a/monai/deploy/operators/dicom_data_loader_operator.py +++ b/monai/deploy/operators/dicom_data_loader_operator.py @@ -308,7 +308,8 @@ def test(): print(f" 'StudyInstanceUID': {ds.StudyInstanceUID if ds.StudyInstanceUID else ''}") print(f" 'SeriesDescription': {ds.SeriesDescription if ds.SeriesDescription else ''}") print( - f" 'IssuerOfPatientID': {ds.get('IssuerOfPatientID', '').repval if ds.get('IssuerOfPatientID', '') else '' }" + " 'IssuerOfPatientID':" + f" {ds.get('IssuerOfPatientID', '').repval if ds.get('IssuerOfPatientID', '') else '' }" ) try: print(f" 'IssuerOfPatientID': {ds.IssuerOfPatientID if ds.IssuerOfPatientID else '' }") diff --git a/monai/deploy/operators/dicom_series_selector_operator.py b/monai/deploy/operators/dicom_series_selector_operator.py index 9f85418c..fd40e461 100644 --- a/monai/deploy/operators/dicom_series_selector_operator.py +++ b/monai/deploy/operators/dicom_series_selector_operator.py @@ -177,7 +177,7 @@ def _select_all_series(self, dicom_study_list: List[DICOMStudy]) -> List[StudySe study_selected_series_list = [] for study in dicom_study_list: logging.info(f"Working on study, instance UID: {study.StudyInstanceUID}") - print((f"Working on study, instance UID: {study.StudyInstanceUID}")) + print(f"Working on study, instance UID: {study.StudyInstanceUID}") study_selected_series = StudySelectedSeries(study) for series in study.get_all_series(): logging.info(f"Working on series, instance UID: {str(series.SeriesInstanceUID)}") @@ -213,7 +213,7 @@ def _select_series(self, attributes: dict, study: DICOMStudy, all_matched=False) matched = True # Simple matching on attribute value for key, value_to_match in attributes.items(): - logging.info(f"On attribute: '{key}' to match value: '{value_to_match}'") + logging.info(f"On attribute: {key!r} to match value: {value_to_match!r}") # Ignore None if not value_to_match: continue diff --git a/monai/deploy/operators/monai_bundle_inference_operator.py b/monai/deploy/operators/monai_bundle_inference_operator.py index 156abe22..f2702b10 100644 --- a/monai/deploy/operators/monai_bundle_inference_operator.py +++ b/monai/deploy/operators/monai_bundle_inference_operator.py @@ -80,7 +80,7 @@ def _read_from_archive(archive, root_name: str, config_name: str, do_search=True for suffix in bundle_suffixes: path = Path(root_name, config_folder, config_name).with_suffix(suffix) try: - logging.debug(f"Trying to read config '{config_name}' content from {path}.") + logging.debug(f"Trying to read config {config_name!r} content from {path}.") content_text = archive.read(str(path)) break except Exception: @@ -89,12 +89,12 @@ def _read_from_archive(archive, root_name: str, config_name: str, do_search=True # Try search for the name in the name list of the archive if not content_text and do_search: - logging.debug(f"Trying to find the file in the archive for config '{config_name}'.") + logging.debug(f"Trying to find the file in the archive for config {config_name!r}.") name_list = archive.namelist() for suffix in bundle_suffixes: for n in name_list: if (f"{config_name}{suffix}").casefold in n.casefold(): - logging.debug(f"Trying to read content of config '{config_name}' from {n}.") + logging.debug(f"Trying to read content of config {config_name!r} from {n}.") content_text = archive.read(n) break diff --git a/monai/deploy/packager/util.py b/monai/deploy/packager/util.py index 2249775b..a2e7a07e 100644 --- a/monai/deploy/packager/util.py +++ b/monai/deploy/packager/util.py @@ -93,11 +93,9 @@ def initialize_args(args: Namespace) -> Dict: dockerfile_type = verify_base_image(args.base) if not dockerfile_type: logger.error( - "Provided base image '{}' is not supported \n \ - Please provide a ROCm or Cuda based Pytorch image from \n \ - https://hub.docker.com/r/rocm/pytorch or https://ngc.nvidia.com/ (nvcr.io/nvidia)".format( - args.base - ) + "Provided base image '{}' is not supported \n Please provide a ROCm or Cuda" + " based Pytorch image from \n https://hub.docker.com/r/rocm/pytorch or" + " https://ngc.nvidia.com/ (nvcr.io/nvidia)".format(args.base) ) sys.exit(1) @@ -237,7 +235,7 @@ def build_image(args: dict, temp_dir: str): dockerignore_file.write(docker_ignore_template) # Build dockerfile into an MAP image - docker_build_cmd = f'''docker build -f "{docker_file_path}" -t {tag} "{temp_dir}"''' + docker_build_cmd = f"""docker build -f {docker_file_path!r} -t {tag} {temp_dir!r}""" if sys.platform != "win32": docker_build_cmd += """ --build-arg MONAI_UID=$(id -u) --build-arg MONAI_GID=$(id -g)""" if no_cache: diff --git a/monai/deploy/runner/runner.py b/monai/deploy/runner/runner.py index d521bf30..a195ced4 100644 --- a/monai/deploy/runner/runner.py +++ b/monai/deploy/runner/runner.py @@ -41,7 +41,7 @@ def fetch_map_manifest(map_name: str) -> Tuple[dict, dict, int]: with tempfile.TemporaryDirectory() as info_dir: if sys.platform == "win32": - cmd = f'docker run --rm -a STDOUT -a STDERR -v "{info_dir}":/var/run/monai/export/config {map_name}' + cmd = f'docker run --rm -a STDOUT -a STDERR -v " {info_dir}":/var/run/monai/export/config {map_name}' else: cmd = f"""docker_id=$(docker create {map_name}) docker cp $docker_id:/etc/monai/app.json "{info_dir}/app.json" @@ -103,8 +103,8 @@ def run_app(map_name: str, input_path: Path, output_path: Path, app_info: dict, if not posixpath.isabs(map_output): map_output = posixpath.join(app_info["working-directory"], map_output) - cmd += f' -e MONAI_INPUTPATH="{map_input}"' - cmd += f' -e MONAI_OUTPUTPATH="{map_output}"' + cmd += ' -e MONAI_INPUTPATH="{}"'.format(map_input) + cmd += ' -e MONAI_OUTPUTPATH="{}"'.format(map_output) # TODO(bhatt-piyush): Handle model environment correctly (maybe solved by fixing 'monai-exec') cmd += " -e MONAI_MODELPATH=/opt/monai/models" diff --git a/monai/deploy/utils/argparse_types.py b/monai/deploy/utils/argparse_types.py index 955a9e37..91fe1e48 100644 --- a/monai/deploy/utils/argparse_types.py +++ b/monai/deploy/utils/argparse_types.py @@ -36,7 +36,7 @@ def valid_dir_path(path: str) -> Path: if dir_path.is_dir(): return dir_path else: - raise argparse.ArgumentTypeError(f"Expected directory path: '{dir_path}' is not a directory") + raise argparse.ArgumentTypeError(f"Expected directory path: {dir_path!r} is not a directory") # create directory dir_path.mkdir(parents=True) @@ -58,7 +58,7 @@ def valid_existing_dir_path(path: str) -> Path: dir_path = Path(path).absolute() if dir_path.exists() and dir_path.is_dir(): return dir_path - raise argparse.ArgumentTypeError(f"No such directory: '{dir_path}'") + raise argparse.ArgumentTypeError(f"No such directory: {dir_path!r}") def valid_existing_path(path: str) -> Path: @@ -76,4 +76,4 @@ def valid_existing_path(path: str) -> Path: file_path = Path(path).absolute() if file_path.exists(): return file_path - raise argparse.ArgumentTypeError(f"No such file/folder: '{file_path}'") + raise argparse.ArgumentTypeError(f"No such file/folder: {file_path!r}") diff --git a/monai/deploy/utils/importutil.py b/monai/deploy/utils/importutil.py index e092be51..486dfc9e 100644 --- a/monai/deploy/utils/importutil.py +++ b/monai/deploy/utils/importutil.py @@ -238,7 +238,7 @@ def optional_import( # preparing lazy error message msg = descriptor.format(actual_cmd) if version and tb is None: # a pure version issue - msg += f" (requires '{module} {version}' by '{version_checker.__name__}')" + msg += f" (requires '{module} {version}' by {version_checker.__name__!r})" if exception_str: msg += f" ({exception_str})" diff --git a/monai/deploy/utils/sizeutil.py b/monai/deploy/utils/sizeutil.py index a6174f96..675c16a9 100644 --- a/monai/deploy/utils/sizeutil.py +++ b/monai/deploy/utils/sizeutil.py @@ -66,7 +66,7 @@ def get_bytes(size: Union[str, int]) -> int: m = re.match(r"^\s*(?P(([1-9]\d+)|\d)(\.\d+)?)\s*(?P[a-z]{1,3})?\s*$", size, re.IGNORECASE) if not m: - raise ValueError(f"Invalid size string ('{size}').") + raise ValueError(f"Invalid size string ({size!r}).") parsed_size = float(m.group("size")) @@ -77,7 +77,7 @@ def get_bytes(size: Union[str, int]) -> int: parsed_unit = "b" # default to bytes if parsed_unit not in BYTES_UNIT: - raise ValueError(f"Invalid unit ('{parsed_unit}').") + raise ValueError(f"Invalid unit ({parsed_unit!r}).") return int(parsed_size * BYTES_UNIT[parsed_unit]) @@ -115,7 +115,7 @@ def convert_bytes(num_bytes: int, unit: str = "Mi") -> Union[str, int]: unit_lowered = unit.lower() if unit_lowered not in BYTES_UNIT: - raise ValueError(f"Invalid unit ('{unit}').") + raise ValueError(f"Invalid unit ({unit!r}).") converted = float(num_bytes) / BYTES_UNIT[unit_lowered] * 10 diff --git a/monai/deploy/utils/version.py b/monai/deploy/utils/version.py index 688e1d5f..7220b064 100644 --- a/monai/deploy/utils/version.py +++ b/monai/deploy/utils/version.py @@ -123,7 +123,7 @@ def get_sdk_semver(): if SEMVER_REGEX.match(semver_str): return semver_str else: - raise ValueError(f"Invalid semver string: '{semver_str}' (from '{version_str}')") + raise ValueError(f"Invalid semver string: {semver_str!r} (from {version_str!r})") else: raise ValueError(f"Invalid version string: {version_str}") diff --git a/notebooks/tutorials/01_simple_app.ipynb b/notebooks/tutorials/01_simple_app.ipynb index c1f71f5c..f3652c4e 100644 --- a/notebooks/tutorials/01_simple_app.ipynb +++ b/notebooks/tutorials/01_simple_app.ipynb @@ -53,7 +53,7 @@ }, { "cell_type": "code", - "execution_count": 26, + "execution_count": 1, "metadata": {}, "outputs": [], "source": [ @@ -64,7 +64,7 @@ "%matplotlib inline\n", "\n", "# Install MONAI Deploy App SDK package\n", - "!python -c \"import monai.deploy\" || pip install -q \"monai-deploy-app-sdk\"" + "!python -c \"import monai.deploy\" || pip install --upgrade -q \"monai-deploy-app-sdk\"" ] }, { @@ -80,7 +80,7 @@ }, { "cell_type": "code", - "execution_count": 27, + "execution_count": 2, "metadata": {}, "outputs": [ { @@ -93,10 +93,10 @@ { "data": { "text/plain": [ - "" + "" ] }, - "execution_count": 27, + "execution_count": 2, "metadata": {}, "output_type": "execute_result" }, @@ -137,7 +137,7 @@ }, { "cell_type": "code", - "execution_count": 28, + "execution_count": 3, "metadata": {}, "outputs": [], "source": [ @@ -175,7 +175,7 @@ }, { "cell_type": "code", - "execution_count": 29, + "execution_count": 4, "metadata": {}, "outputs": [], "source": [ @@ -218,7 +218,7 @@ }, { "cell_type": "code", - "execution_count": 30, + "execution_count": 5, "metadata": {}, "outputs": [], "source": [ @@ -255,7 +255,7 @@ }, { "cell_type": "code", - "execution_count": 31, + "execution_count": 6, "metadata": {}, "outputs": [], "source": [ @@ -276,14 +276,12 @@ " import numpy as np\n", "\n", " data_in = op_input.get().asnumpy()\n", - " data_out = gaussian(data_in, sigma=0.2)\n", + " data_out = gaussian(data_in, sigma=0.2, channel_axis=2)\n", "\n", " # Make sure the data type is what PIL Image can support, as the imsave function calls PIL Image fromarray()\n", " # Some details can be found at https://stackoverflow.com/questions/55319949/pil-typeerror-cannot-handle-this-data-type\n", - " print(f\"Data type of output: {type(data_out)!r}, max = {np.max(data_out)!r}\")\n", " if np.max(data_out) <= 1:\n", " data_out = (data_out * 255).astype(np.uint8)\n", - " print(f\"Data type of output post conversion: {type(data_out)!r}, max = {np.max(data_out)!r}\")\n", "\n", " output_folder = op_output.get().path\n", " output_path = output_folder / \"final_output.png\"\n", @@ -305,7 +303,7 @@ }, { "cell_type": "code", - "execution_count": 32, + "execution_count": 7, "metadata": {}, "outputs": [], "source": [ @@ -366,7 +364,7 @@ }, { "cell_type": "code", - "execution_count": 33, + "execution_count": 8, "metadata": {}, "outputs": [], "source": [ @@ -375,7 +373,7 @@ }, { "cell_type": "code", - "execution_count": 34, + "execution_count": 9, "metadata": {}, "outputs": [ { @@ -383,28 +381,18 @@ "output_type": "stream", "text": [ "\u001b[34mGoing to initiate execution of operator SobelOperator\u001b[39m\n", - "\u001b[32mExecuting operator SobelOperator \u001b[33m(Process ID: 203390, Operator ID: f772970f-efa6-4562-aa0c-dab836739c9e)\u001b[39m\n", + "\u001b[32mExecuting operator SobelOperator \u001b[33m(Process ID: 392143, Operator ID: f824ca43-651a-4ec8-a9ff-d3575b31234b)\u001b[39m\n", "\u001b[34mDone performing execution of operator SobelOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator MedianOperator\u001b[39m\n", - "\u001b[32mExecuting operator MedianOperator \u001b[33m(Process ID: 203390, Operator ID: 73024b19-041f-4e28-bc12-f4e4d5f69baa)\u001b[39m\n", + "\u001b[32mExecuting operator MedianOperator \u001b[33m(Process ID: 392143, Operator ID: 01534244-2cde-499d-a060-1b5443a1618b)\u001b[39m\n", "\u001b[34mDone performing execution of operator MedianOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator GaussianOperator\u001b[39m\n", - "\u001b[32mExecuting operator GaussianOperator \u001b[33m(Process ID: 203390, Operator ID: 13b3c64d-05b8-42a6-89e6-d93b51fa5dbf)\u001b[39m\n", - "Data type of output: , max = 0.35821119421406195\n", - "Data type of output post conversion: , max = 91\n", + "\u001b[32mExecuting operator GaussianOperator \u001b[33m(Process ID: 392143, Operator ID: 6547b79e-aab7-4e63-a0b6-e0b5a5c35286)\u001b[39m\n", "\u001b[34mDone performing execution of operator GaussianOperator\n", "\u001b[39m\n" ] - }, - { - "name": "stderr", - "output_type": "stream", - "text": [ - "/tmp/ipykernel_203390/1222428124.py:18: FutureWarning: Automatic detection of the color channel was deprecated in v0.19, and `channel_axis=None` will be the new default in v0.22. Set `channel_axis=-1` explicitly to silence this warning.\n", - " data_out = gaussian(data_in, sigma=0.2)\n" - ] } ], "source": [ @@ -413,14 +401,14 @@ }, { "cell_type": "code", - "execution_count": 35, + "execution_count": 10, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "final_output.png\n" + "final_output.png output.json\n" ] } ], @@ -430,16 +418,16 @@ }, { "cell_type": "code", - "execution_count": 36, + "execution_count": 11, "metadata": {}, "outputs": [ { "data": { "text/plain": [ - "" + "" ] }, - "execution_count": 36, + "execution_count": 11, "metadata": {}, "output_type": "execute_result" }, @@ -484,7 +472,7 @@ }, { "cell_type": "code", - "execution_count": 37, + "execution_count": 12, "metadata": {}, "outputs": [], "source": [ @@ -501,7 +489,7 @@ }, { "cell_type": "code", - "execution_count": 38, + "execution_count": 13, "metadata": {}, "outputs": [ { @@ -551,7 +539,7 @@ }, { "cell_type": "code", - "execution_count": 39, + "execution_count": 14, "metadata": {}, "outputs": [ { @@ -588,7 +576,7 @@ }, { "cell_type": "code", - "execution_count": 40, + "execution_count": 15, "metadata": {}, "outputs": [ { @@ -622,14 +610,12 @@ " import numpy as np\n", "\n", " data_in = op_input.get().asnumpy()\n", - " data_out = gaussian(data_in, sigma=0.2)\n", + " data_out = gaussian(data_in, sigma=0.2, channel_axis=2)\n", "\n", " # Make sure the data type is what PIL Image can support, as the imsave function calls PIL Image fromarray()\n", " # Some details can be found at https://stackoverflow.com/questions/55319949/pil-typeerror-cannot-handle-this-data-type\n", - " print(f\"Data type of output: {type(data_out)!r}, max = {np.max(data_out)!r}\")\n", " if np.max(data_out) <= 1:\n", " data_out = (data_out * 255).astype(np.uint8)\n", - " print(f\"Data type of output post conversion: {type(data_out)!r}, max = {np.max(data_out)!r}\")\n", "\n", " output_folder = op_output.get().path\n", " output_path = output_folder / \"final_output.png\"\n", @@ -645,7 +631,7 @@ }, { "cell_type": "code", - "execution_count": 41, + "execution_count": 16, "metadata": {}, "outputs": [ { @@ -700,7 +686,7 @@ }, { "cell_type": "code", - "execution_count": 42, + "execution_count": 17, "metadata": {}, "outputs": [ { @@ -721,7 +707,7 @@ }, { "cell_type": "code", - "execution_count": 43, + "execution_count": 18, "metadata": {}, "outputs": [ { @@ -746,7 +732,7 @@ }, { "cell_type": "code", - "execution_count": 44, + "execution_count": 19, "metadata": {}, "outputs": [ { @@ -754,19 +740,15 @@ "output_type": "stream", "text": [ "\u001b[34mGoing to initiate execution of operator SobelOperator\u001b[39m\n", - "\u001b[32mExecuting operator SobelOperator \u001b[33m(Process ID: 204326, Operator ID: 52de861b-4348-492c-b960-672a019d70ff)\u001b[39m\n", + "\u001b[32mExecuting operator SobelOperator \u001b[33m(Process ID: 392307, Operator ID: bf71b6a9-448b-4ec6-8c55-5adc01727491)\u001b[39m\n", "\u001b[34mDone performing execution of operator SobelOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator MedianOperator\u001b[39m\n", - "\u001b[32mExecuting operator MedianOperator \u001b[33m(Process ID: 204326, Operator ID: 3da7a009-bbae-49ca-bc80-98bf4de82f50)\u001b[39m\n", + "\u001b[32mExecuting operator MedianOperator \u001b[33m(Process ID: 392307, Operator ID: 9d65479c-d249-408a-9023-05c2948b2345)\u001b[39m\n", "\u001b[34mDone performing execution of operator MedianOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator GaussianOperator\u001b[39m\n", - "\u001b[32mExecuting operator GaussianOperator \u001b[33m(Process ID: 204326, Operator ID: 7edff68e-3748-4b55-97c4-0f310157a3f9)\u001b[39m\n", - "/home/mqin/src/monai-deploy-app-sdk/notebooks/tutorials/simple_imaging_app/gaussian_operator.py:22: FutureWarning: Automatic detection of the color channel was deprecated in v0.19, and `channel_axis=None` will be the new default in v0.22. Set `channel_axis=-1` explicitly to silence this warning.\n", - " data_out = gaussian(data_in, sigma=0.2)\n", - "Data type of output: , max = 0.35821119421406195\n", - "Data type of output post conversion: , max = 91\n", + "\u001b[32mExecuting operator GaussianOperator \u001b[33m(Process ID: 392307, Operator ID: 1789c85f-7a05-4d8c-90f5-d619eea35de2)\u001b[39m\n", "\u001b[34mDone performing execution of operator GaussianOperator\n", "\u001b[39m\n" ] @@ -785,7 +767,7 @@ }, { "cell_type": "code", - "execution_count": 45, + "execution_count": 20, "metadata": {}, "outputs": [ { @@ -793,19 +775,15 @@ "output_type": "stream", "text": [ "\u001b[34mGoing to initiate execution of operator SobelOperator\u001b[39m\n", - "\u001b[32mExecuting operator SobelOperator \u001b[33m(Process ID: 204375, Operator ID: 4302e20a-5292-4b15-bb4e-d8e2c226e66b)\u001b[39m\n", + "\u001b[32mExecuting operator SobelOperator \u001b[33m(Process ID: 392355, Operator ID: db7c9af2-0d61-4ef0-80a3-225659635f8c)\u001b[39m\n", "\u001b[34mDone performing execution of operator SobelOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator MedianOperator\u001b[39m\n", - "\u001b[32mExecuting operator MedianOperator \u001b[33m(Process ID: 204375, Operator ID: 460896ca-51c2-4ee1-9a42-bf5f299e7cde)\u001b[39m\n", + "\u001b[32mExecuting operator MedianOperator \u001b[33m(Process ID: 392355, Operator ID: 523c9aeb-7683-4043-bc44-fece70361921)\u001b[39m\n", "\u001b[34mDone performing execution of operator MedianOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator GaussianOperator\u001b[39m\n", - "\u001b[32mExecuting operator GaussianOperator \u001b[33m(Process ID: 204375, Operator ID: 807d0e75-f640-4081-96b2-c280c15b0e1e)\u001b[39m\n", - "/home/mqin/src/monai-deploy-app-sdk/notebooks/tutorials/simple_imaging_app/gaussian_operator.py:22: FutureWarning: Automatic detection of the color channel was deprecated in v0.19, and `channel_axis=None` will be the new default in v0.22. Set `channel_axis=-1` explicitly to silence this warning.\n", - " data_out = gaussian(data_in, sigma=0.2)\n", - "Data type of output: , max = 0.35821119421406195\n", - "Data type of output post conversion: , max = 91\n", + "\u001b[32mExecuting operator GaussianOperator \u001b[33m(Process ID: 392355, Operator ID: db126942-577f-482e-b241-db43f2c473fa)\u001b[39m\n", "\u001b[34mDone performing execution of operator GaussianOperator\n", "\u001b[39m\n" ] @@ -817,16 +795,16 @@ }, { "cell_type": "code", - "execution_count": 46, + "execution_count": 21, "metadata": {}, "outputs": [ { "data": { "text/plain": [ - "" + "" ] }, - "execution_count": 46, + "execution_count": 21, "metadata": {}, "output_type": "execute_result" }, @@ -862,31 +840,31 @@ }, { "cell_type": "code", - "execution_count": 47, + "execution_count": 22, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "Building MONAI Application Package... -\u001b[1A\u001b[1B\u001b[0G\u001b[?25l[+] Building 0.0s (0/2) \n", + "Building MONAI Application Package... -\u001b[1A\u001b[1B\u001b[0G\u001b[?25l[+] Building 0.0s (0/1) \n", "\u001b[?25h\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.1s (4/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.0s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m => [internal] load build context 0.0s\n", - "\u001b[34m => => transferring context: 486.73kB 0.0s\n", + "\u001b[34m => => transferring context: 486.62kB 0.0s\n", "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.2s (20/20) FINISHED \n", - "\u001b[34m => [internal] load .dockerignore 0.0s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 486.73kB 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 486.62kB 0.0s\n", "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", @@ -904,10 +882,10 @@ "\u001b[0m\u001b[34m => CACHED [15/15] WORKDIR /var/monai/ 0.0s\n", "\u001b[0m\u001b[34m => exporting to image 0.0s\n", "\u001b[0m\u001b[34m => => exporting layers 0.0s\n", - "\u001b[0m\u001b[34m => => writing image sha256:92b121f91f8c4d5f3b209b890ae0c496303b975e1aefc 0.0s\n", + "\u001b[0m\u001b[34m => => writing image sha256:8da4c014d84a849aba76089e7f497f8988f14cb52b9b4 0.0s\n", "\u001b[0m\u001b[34m => => naming to docker.io/library/simple_app:latest 0.0s\n", "\u001b[0m\u001b[?25Done\n", - "[2023-07-07 11:27:37,974] [INFO] (app_packager) - Successfully built simple_app:latest\n" + "[2023-07-11 12:14:27,059] [INFO] (app_packager) - Successfully built simple_app:latest\n" ] } ], @@ -929,14 +907,14 @@ }, { "cell_type": "code", - "execution_count": 48, + "execution_count": 23, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "simple_app latest 92b121f91f8c 3 minutes ago 15.1GB\n" + "simple_app latest 8da4c014d84a 34 minutes ago 15.1GB\n" ] } ], @@ -955,7 +933,7 @@ }, { "cell_type": "code", - "execution_count": 49, + "execution_count": 24, "metadata": {}, "outputs": [ { @@ -973,22 +951,18 @@ "\"simple_app:latest\" found.\n", "\n", "Reading MONAI App Package manifest...\n", - "\u001b[sPreparing to copy...\u001b[?25l\u001b[u\u001b[2KCopying from container - 0B\u001b[?25h\u001b[u\u001b[2KSuccessfully copied 2.05kB to /tmp/tmplr8ceomp/app.json\n", - "\u001b[sPreparing to copy...\u001b[?25l\u001b[u\u001b[2KCopying from container - 0B\u001b[?25h\u001b[u\u001b[2KSuccessfully copied 2.05kB to /tmp/tmplr8ceomp/pkg.json\n", + "\u001b[sPreparing to copy...\u001b[?25l\u001b[u\u001b[2KCopying from container - 0B\u001b[?25h\u001b[u\u001b[2KSuccessfully copied 2.05kB to /tmp/tmp112gy4zc/app.json\n", + "\u001b[sPreparing to copy...\u001b[?25l\u001b[u\u001b[2KCopying from container - 0B\u001b[?25h\u001b[u\u001b[2KSuccessfully copied 2.05kB to /tmp/tmp112gy4zc/pkg.json\n", "\u001b[34mGoing to initiate execution of operator SobelOperator\u001b[39m\n", - "\u001b[32mExecuting operator SobelOperator \u001b[33m(Process ID: 1, Operator ID: dd357140-5dac-4896-953c-645d778adc92)\u001b[39m\n", + "\u001b[32mExecuting operator SobelOperator \u001b[33m(Process ID: 1, Operator ID: dd587602-8c8b-464d-8c34-4c3904c57031)\u001b[39m\n", "\u001b[34mDone performing execution of operator SobelOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator MedianOperator\u001b[39m\n", - "\u001b[32mExecuting operator MedianOperator \u001b[33m(Process ID: 1, Operator ID: b26b71ed-a70b-4130-ab66-d340e887136d)\u001b[39m\n", + "\u001b[32mExecuting operator MedianOperator \u001b[33m(Process ID: 1, Operator ID: 08ebceb3-afb4-430a-8213-3524bded2b73)\u001b[39m\n", "\u001b[34mDone performing execution of operator MedianOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator GaussianOperator\u001b[39m\n", - "\u001b[32mExecuting operator GaussianOperator \u001b[33m(Process ID: 1, Operator ID: 584a4270-6a6b-4a5f-a711-688649368cf3)\u001b[39m\n", - "/opt/monai/app/gaussian_operator.py:22: FutureWarning: Automatic detection of the color channel was deprecated in v0.19, and `channel_axis=None` will be the new default in v0.22. Set `channel_axis=-1` explicitly to silence this warning.\n", - " data_out = gaussian(data_in, sigma=0.2)\n", - "Data type of output: , max = 0.35821119421406195\n", - "Data type of output post conversion: , max = 91\n", + "\u001b[32mExecuting operator GaussianOperator \u001b[33m(Process ID: 1, Operator ID: 12247318-62c2-43e4-9213-2a012ea07ec5)\u001b[39m\n", "\u001b[34mDone performing execution of operator GaussianOperator\n", "\u001b[39m\n" ] @@ -1007,16 +981,16 @@ }, { "cell_type": "code", - "execution_count": 50, + "execution_count": 25, "metadata": {}, "outputs": [ { "data": { "text/plain": [ - "" + "" ] }, - "execution_count": 50, + "execution_count": 25, "metadata": {}, "output_type": "execute_result" }, diff --git a/notebooks/tutorials/02_mednist_app-prebuilt.ipynb b/notebooks/tutorials/02_mednist_app-prebuilt.ipynb index 7b56d5f2..1e817373 100644 --- a/notebooks/tutorials/02_mednist_app-prebuilt.ipynb +++ b/notebooks/tutorials/02_mednist_app-prebuilt.ipynb @@ -30,10 +30,10 @@ "Cloning into 'source'...\n", "remote: Enumerating objects: 287, done.\u001b[K\n", "remote: Counting objects: 100% (287/287), done.\u001b[K\n", - "remote: Compressing objects: 100% (249/249), done.\u001b[K\n", - "remote: Total 287 (delta 60), reused 130 (delta 24), pack-reused 0\u001b[K\n", - "Receiving objects: 100% (287/287), 1.24 MiB | 14.81 MiB/s, done.\n", - "Resolving deltas: 100% (60/60), done.\n" + "remote: Compressing objects: 100% (253/253), done.\u001b[K\n", + "remote: Total 287 (delta 61), reused 121 (delta 20), pack-reused 0\u001b[K\n", + "Receiving objects: 100% (287/287), 1.21 MiB | 10.01 MiB/s, done.\n", + "Resolving deltas: 100% (61/61), done.\n" ] } ], @@ -76,11 +76,14 @@ "name": "stdout", "output_type": "stream", "text": [ - "Requirement already satisfied: monai-deploy-app-sdk in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (0.5.0)\n", - "Requirement already satisfied: numpy>=1.21.2 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from monai-deploy-app-sdk) (1.24.4)\n", + "Requirement already satisfied: monai-deploy-app-sdk in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (0.4.0+84.ge670e4e.dirty)\n", + "Requirement already satisfied: numpy>=1.21.6 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from monai-deploy-app-sdk) (1.24.4)\n", "Requirement already satisfied: networkx>=2.4 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from monai-deploy-app-sdk) (3.1)\n", "Requirement already satisfied: colorama>=0.4.1 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from monai-deploy-app-sdk) (0.4.6)\n", - "Requirement already satisfied: typeguard>=2.12.1 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from monai-deploy-app-sdk) (2.12.1)\n" + "Requirement already satisfied: typeguard>=3.0.0 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from monai-deploy-app-sdk) (4.0.0)\n", + "Requirement already satisfied: importlib-metadata>=3.6 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from typeguard>=3.0.0->monai-deploy-app-sdk) (6.8.0)\n", + "Requirement already satisfied: typing-extensions>=4.4.0 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from typeguard>=3.0.0->monai-deploy-app-sdk) (4.7.1)\n", + "Requirement already satisfied: zipp>=0.5 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->monai-deploy-app-sdk) (3.16.0)\n" ] } ], @@ -137,7 +140,7 @@ "source": [ "!pip install monai Pillow # for MONAI transforms and Pillow\n", "!python -c \"import pydicom\" || pip install -q \"pydicom>=1.4.2\"\n", - "!python -c \"import highdicom\" || pip install -q \"highdicom>=0.18.2\"" + "!python -c \"import highdicom\" || pip install -q \"highdicom>=0.18.2\" # for the use of DICOM Writer operators" ] }, { @@ -163,16 +166,16 @@ "Requirement already satisfied: tqdm in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from gdown) (4.65.0)\n", "Requirement already satisfied: beautifulsoup4 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from gdown) (4.12.2)\n", "Requirement already satisfied: soupsieve>1.2 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from beautifulsoup4->gdown) (2.4.1)\n", - "Requirement already satisfied: charset-normalizer<4,>=2 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (3.1.0)\n", + "Requirement already satisfied: charset-normalizer<4,>=2 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (3.2.0)\n", "Requirement already satisfied: idna<4,>=2.5 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (3.4)\n", "Requirement already satisfied: urllib3<3,>=1.21.1 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (2.0.3)\n", "Requirement already satisfied: certifi>=2017.4.17 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (2023.5.7)\n", "Requirement already satisfied: PySocks!=1.5.7,>=1.5.6 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (1.7.1)\n", "Downloading...\n", "From (uriginal): https://drive.google.com/uc?id=1yJ4P-xMNEfN6lIOq_u6x1eMAq1_MJu-E\n", - "From (redirected): https://drive.google.com/uc?id=1yJ4P-xMNEfN6lIOq_u6x1eMAq1_MJu-E&confirm=t&uuid=1ab60c6b-481c-4270-8896-1d40bb925843\n", + "From (redirected): https://drive.google.com/uc?id=1yJ4P-xMNEfN6lIOq_u6x1eMAq1_MJu-E&confirm=t&uuid=64399e9b-2546-4500-9f28-b298c7c5c684\n", "To: /home/mqin/src/monai-deploy-app-sdk/notebooks/tutorials/mednist_classifier_data.zip\n", - "100%|██████████████████████████████████████| 28.6M/28.6M [00:01<00:00, 25.3MB/s]\n" + "100%|██████████████████████████████████████| 28.6M/28.6M [00:00<00:00, 64.6MB/s]\n" ] } ], @@ -224,1937 +227,352 @@ "name": "stdout", "output_type": "stream", "text": [ - "Building MONAI Application Package... -\u001b[1A\u001b[1B\u001b[0G\u001b[?25l[+] Building 0.0s (0/2) \n", - "\u001b[?25h\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.1s (2/2) \n", + "Building MONAI Application Package... -\u001b[1A\u001b[1B\u001b[0G\u001b[?25l[+] Building 0.0s (0/1) \n", + "\u001b[?25h\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.1s (1/2) \n", "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.3s (4/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m => [internal] load build context 0.1s\n", - " => => transferring context: 23B 0.1s\n", - "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.4s (4/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m => [internal] load build context 0.2s\n", - " => => transferring context: 20.42MB 0.2s\n", - "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.5s (5/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.7s (10/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.1s\n", - "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.8s (10/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.3s\n", - "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.0s (10/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.4s\n", - "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.1s (10/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.3s (11/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.1s\n", - "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.4s (11/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.3s\n", - "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.6s (11/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.4s\n", - "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.7s (11/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.6s\n", - "\u001b[2m => => # % Total % Received % Xferd Average Speed Time Time Time\n", - "\u001b[0m\u001b[2m => => # Current \n", - "\u001b[0m\u001b[2m => => # Dload Upload Total Spent Left\n", - "\u001b[0m\u001b[2m => => # Speed \n", - "\u001b[0m\u001b[2m => => # 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:\n", - "\u001b[0m\u001b[2m => => # -- 0 \n", - "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.9s (11/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.7s\n", - "\u001b[2m => => # Archive: /opt/monai/executor/executor.zip \n", - "\u001b[0m\u001b[2m => => # inflating: /opt/monai/executor/executor_pkg/_rels/.rels \n", - "\u001b[0m\u001b[2m => => # inflating: /opt/monai/executor/executor_pkg/Monai.Deploy.Executor.nu\n", - "\u001b[0m\u001b[2m => => # spec \n", - "\u001b[0m\u001b[2m => => # inflating: /opt/monai/executor/executor_pkg/lib/native/linux-x64/mon\n", - "\u001b[0m\u001b[2m => => # ai-exec \n", - "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.0s (11/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", - "\u001b[2m => => # Archive: /opt/monai/executor/executor.zip \n", - "\u001b[0m\u001b[2m => => # inflating: /opt/monai/executor/executor_pkg/_rels/.rels \n", - "\u001b[0m\u001b[2m => => # inflating: /opt/monai/executor/executor_pkg/Monai.Deploy.Executor.nu\n", - "\u001b[0m\u001b[2m => => # spec \n", - "\u001b[0m\u001b[2m => => # inflating: /opt/monai/executor/executor_pkg/lib/native/linux-x64/mon\n", - "\u001b[0m\u001b[2m => => # ai-exec \n", - "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.2s (11/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[2m => => # inflating: /opt/monai/executor/executor_pkg/lib/native/linux-x64/mon\n", - "\u001b[0m\u001b[2m => => # ai-exec \n", - "\u001b[0m\u001b[2m => => # inflating: /opt/monai/executor/executor_pkg/[Content_Types].xml \n", - "\u001b[0m\u001b[2m => => # inflating: /opt/monai/executor/executor_pkg/package/services/metadat\n", - "\u001b[0m\u001b[2m => => # a/core-properties/c09c14c8557342a7b41ac545107c1263.psmdcp \n", - "\u001b[0m\u001b[2m => => # extracting: /opt/monai/executor/executor_pkg/.signature.p7s \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.3s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m \n", - " \n", - " \n", - " \n", - " \n", - " \n", - "\u001b[6A\u001b[0G\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.4s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 0.1s\n", - "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.6s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 0.3s\n", - "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.7s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 0.4s\n", - "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.9s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 0.6s\n", - "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.0s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 0.7s\n", - "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.2s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 0.9s\n", - "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.3s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 1.0s\n", - "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.5s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 1.2s\n", - "\u001b[2m => => # Collecting pydicom>=2.3.0 \n", - "\u001b[0m\u001b[2m => => # Downloading pydicom-2.4.1-py3-none-any.whl (1.8 MB) \n", - "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.6s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 1.3s\n", - "\u001b[2m => => # Collecting pydicom>=2.3.0 \n", - "\u001b[0m\u001b[2m => => # Downloading pydicom-2.4.1-py3-none-any.whl (1.8 MB) \n", - "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.8s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 1.5s\n", - "\u001b[2m => => # Collecting pydicom>=2.3.0 \n", - "\u001b[0m\u001b[2m => => # Downloading pydicom-2.4.1-py3-none-any.whl (1.8 MB) \n", - "\u001b[0m\u001b[2m => => # Collecting highdicom>=0.18.2 \n", - "\u001b[0m\u001b[2m => => # Downloading highdicom-0.21.1-py3-none-any.whl (807 kB) \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.9s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 1.6s\n", - "\u001b[2m => => # Collecting typeguard~=2.12.1 \n", - "\u001b[0m\u001b[2m => => # Downloading typeguard-2.12.1-py3-none-any.whl (17 kB) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: pillow in /opt/conda/lib/python3.8/site\n", - "\u001b[0m\u001b[2m => => # -packages (from -r /tmp/requirements.txt (line 4)) (8.2.0) \n", - "\u001b[0m\u001b[2m => => # Collecting monai \n", - "\u001b[0m\u001b[2m => => # Downloading monai-1.2.0-202306081546-py3-none-any.whl (1.3 MB) \n", - "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.0s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 1.7s\n", - "\u001b[2m => => # -packages (from -r /tmp/requirements.txt (line 4)) (8.2.0) \n", - "\u001b[0m\u001b[2m => => # Collecting monai \n", - "\u001b[0m\u001b[2m => => # Downloading monai-1.2.0-202306081546-py3-none-any.whl (1.3 MB) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: numpy>=1.21.2 in /opt/conda/lib/python3\n", - "\u001b[0m\u001b[2m => => # .8/site-packages (from -r /tmp/requirements.txt (line 7)) (1.24.3) \n", - "\u001b[0m\u001b[2m => => # Collecting networkx>=2.4 \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.1s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 1.9s\n", - "\u001b[2m => => # Requirement already satisfied: numpy>=1.21.2 in /opt/conda/lib/python3\n", - "\u001b[0m\u001b[2m => => # .8/site-packages (from -r /tmp/requirements.txt (line 7)) (1.24.3) \n", - "\u001b[0m\u001b[2m => => # Collecting networkx>=2.4 \n", - "\u001b[0m\u001b[2m => => # Downloading networkx-3.1-py3-none-any.whl (2.1 MB) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: colorama>=0.4.1 in /opt/conda/lib/pytho\n", - "\u001b[0m\u001b[2m => => # n3.8/site-packages (from -r /tmp/requirements.txt (line 9)) (0.4.4) \n", - "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.3s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 2.0s\n", - "\u001b[2m => => # Requirement already satisfied: numpy>=1.21.2 in /opt/conda/lib/python3\n", - "\u001b[0m\u001b[2m => => # .8/site-packages (from -r /tmp/requirements.txt (line 7)) (1.24.3) \n", - "\u001b[0m\u001b[2m => => # Collecting networkx>=2.4 \n", - "\u001b[0m\u001b[2m => => # Downloading networkx-3.1-py3-none-any.whl (2.1 MB) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: colorama>=0.4.1 in /opt/conda/lib/pytho\n", - "\u001b[0m\u001b[2m => => # n3.8/site-packages (from -r /tmp/requirements.txt (line 9)) (0.4.4) \n", - "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.4s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 2.2s\n", - "\u001b[2m => => # Requirement already satisfied: numpy>=1.21.2 in /opt/conda/lib/python3\n", - "\u001b[0m\u001b[2m => => # .8/site-packages (from -r /tmp/requirements.txt (line 7)) (1.24.3) \n", - "\u001b[0m\u001b[2m => => # Collecting networkx>=2.4 \n", - "\u001b[0m\u001b[2m => => # Downloading networkx-3.1-py3-none-any.whl (2.1 MB) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: colorama>=0.4.1 in /opt/conda/lib/pytho\n", - "\u001b[0m\u001b[2m => => # n3.8/site-packages (from -r /tmp/requirements.txt (line 9)) (0.4.4) \n", - "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.6s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 2.3s\n", - "\u001b[2m => => # Requirement already satisfied: numpy>=1.21.2 in /opt/conda/lib/python3\n", - "\u001b[0m\u001b[2m => => # .8/site-packages (from -r /tmp/requirements.txt (line 7)) (1.24.3) \n", - "\u001b[0m\u001b[2m => => # Collecting networkx>=2.4 \n", - "\u001b[0m\u001b[2m => => # Downloading networkx-3.1-py3-none-any.whl (2.1 MB) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: colorama>=0.4.1 in /opt/conda/lib/pytho\n", - "\u001b[0m\u001b[2m => => # n3.8/site-packages (from -r /tmp/requirements.txt (line 9)) (0.4.4) \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.7s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 2.5s\n", - "\u001b[2m => => # Downloading networkx-3.1-py3-none-any.whl (2.1 MB) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: colorama>=0.4.1 in /opt/conda/lib/pytho\n", - "\u001b[0m\u001b[2m => => # n3.8/site-packages (from -r /tmp/requirements.txt (line 9)) (0.4.4) \n", - "\u001b[0m\u001b[2m => => # Collecting pillow \n", - "\u001b[0m\u001b[2m => => # Downloading Pillow-10.0.0-cp38-cp38-manylinux_2_28_x86_64.whl (3.4 M\n", - "\u001b[0m\u001b[2m => => # B) \n", - "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.9s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 2.6s\n", - "\u001b[2m => => # Collecting pillow \n", - "\u001b[0m\u001b[2m => => # Downloading Pillow-10.0.0-cp38-cp38-manylinux_2_28_x86_64.whl (3.4 M\n", - "\u001b[0m\u001b[2m => => # B) \n", - "\u001b[0m\u001b[2m => => # Collecting pillow-jpls>=1.0 \n", - "\u001b[0m\u001b[2m => => # Downloading pillow_jpls-1.2.0-cp38-cp38-manylinux_2_17_x86_64.manyli\n", - "\u001b[0m\u001b[2m => => # nux2014_x86_64.whl (340 kB) \n", - "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.0s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 2.8s\n", - "\u001b[2m => => # Requirement already satisfied: torch>=1.9 in /opt/conda/lib/python3.8/\n", - "\u001b[0m\u001b[2m => => # site-packages (from monai->-r /tmp/requirements.txt (line 5)) (1.10.0a\n", - "\u001b[0m\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.2s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 2.9s\n", - "\u001b[2m => => # Requirement already satisfied: torch>=1.9 in /opt/conda/lib/python3.8/\n", - "\u001b[0m\u001b[2m => => # site-packages (from monai->-r /tmp/requirements.txt (line 5)) (1.10.0a\n", - "\u001b[0m\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.3s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 3.1s\n", - "\u001b[2m => => # Requirement already satisfied: torch>=1.9 in /opt/conda/lib/python3.8/\n", - "\u001b[0m\u001b[2m => => # site-packages (from monai->-r /tmp/requirements.txt (line 5)) (1.10.0a\n", - "\u001b[0m\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.5s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 3.2s\n", - "\u001b[2m => => # Requirement already satisfied: torch>=1.9 in /opt/conda/lib/python3.8/\n", - "\u001b[0m\u001b[2m => => # site-packages (from monai->-r /tmp/requirements.txt (line 5)) (1.10.0a\n", - "\u001b[0m\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.6s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 3.4s\n", - "\u001b[2m => => # Requirement already satisfied: torch>=1.9 in /opt/conda/lib/python3.8/\n", - "\u001b[0m\u001b[2m => => # site-packages (from monai->-r /tmp/requirements.txt (line 5)) (1.10.0a\n", - "\u001b[0m\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.8s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 3.5s\n", - "\u001b[2m => => # Requirement already satisfied: torch>=1.9 in /opt/conda/lib/python3.8/\n", - "\u001b[0m\u001b[2m => => # site-packages (from monai->-r /tmp/requirements.txt (line 5)) (1.10.0a\n", - "\u001b[0m\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.9s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 3.7s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.1s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 3.8s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.2s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 4.0s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.4s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 4.1s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.5s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 4.3s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.7s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 4.4s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.8s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 4.6s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.0s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 4.7s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.1s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 4.9s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.3s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 5.0s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.4s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 5.2s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.6s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 5.3s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.7s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 5.5s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.9s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 5.6s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.0s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 5.8s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.2s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 5.9s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.3s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 6.1s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.5s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 6.2s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.6s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 6.4s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.8s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 6.5s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.9s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 6.7s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.1s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 6.8s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.2s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 7.0s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.4s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 7.1s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.5s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 7.3s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.7s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 7.4s\n", - "\u001b[2m => => # 0+ecc3718) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /tmp/requirements.txt\n", - "\u001b[0m\u001b[2m => => # (line 5)) (3.10.0.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: pillow, pydicom, pillow-jpls, typeguard\n", - "\u001b[0m\u001b[2m => => # , networkx, monai, highdicom \n", - "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.9s (12/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 7.6s\n", - "\u001b[2m => => # Successfully installed highdicom-0.21.1 monai-1.2.0 networkx-3.1 pillo\n", - "\u001b[0m\u001b[2m => => # w-10.0.0 pillow-jpls-1.2.0 pydicom-2.4.1 typeguard-2.12.1 \n", - "\u001b[0m\u001b[2m => => # WARNING: Running pip as the 'root' user can result in broken permissio\n", - "\u001b[0m\u001b[2m => => # ns and conflicting behaviour with the system package manager. It is re\n", - "\u001b[0m\u001b[2m => => # commended to use a virtual environment instead: https://pip.pypa.io/wa\n", - "\u001b[0m\u001b[2m => => # rnings/venv \n", - "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 10.0s (12/19) \n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m => [internal] load .dockerignore 0.1s\n", + "\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.2s (4/19) \n", "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 7.7s\n", - "\u001b[2m => => # commended to use a virtual environment instead: https://pip.pypa.io/wa\n", - "\u001b[0m\u001b[2m => => # rnings/venv \n", - "\u001b[0m\u001b[2m => => # WARNING: You are using pip version 21.3.1; however, version 23.1.2 is \n", - "\u001b[0m\u001b[2m => => # available. \n", - "\u001b[0m\u001b[2m => => # You should consider upgrading via the '/opt/conda/bin/python3.8 -m pip\n", - "\u001b[0m\u001b[2m => => # install --upgrade pip' command. \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 10.2s (12/19) \n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m => [internal] load build context 0.0s\n", + " => => transferring context: 0.0s\n", + "\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.3s (4/19) \n", "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 7.9s\n", - "\u001b[2m => => # commended to use a virtual environment instead: https://pip.pypa.io/wa\n", - "\u001b[0m\u001b[2m => => # rnings/venv \n", - "\u001b[0m\u001b[2m => => # WARNING: You are using pip version 21.3.1; however, version 23.1.2 is \n", - "\u001b[0m\u001b[2m => => # available. \n", - "\u001b[0m\u001b[2m => => # You should consider upgrading via the '/opt/conda/bin/python3.8 -m pip\n", - "\u001b[0m\u001b[2m => => # install --upgrade pip' command. \n", - "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 10.3s (12/19) \n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m => [internal] load build context 0.1s\n", + " => => transferring context: 8.98MB 0.1s\n", + "\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.4s (4/19) \n", "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 8.0s\n", - "\u001b[2m => => # commended to use a virtual environment instead: https://pip.pypa.io/wa\n", - "\u001b[0m\u001b[2m => => # rnings/venv \n", - "\u001b[0m\u001b[2m => => # WARNING: You are using pip version 21.3.1; however, version 23.1.2 is \n", - "\u001b[0m\u001b[2m => => # available. \n", - "\u001b[0m\u001b[2m => => # You should consider upgrading via the '/opt/conda/bin/python3.8 -m pip\n", - "\u001b[0m\u001b[2m => => # install --upgrade pip' command. \n", - "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 10.5s (12/19) \n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m => [internal] load build context 0.2s\n", + " => => transferring context: 20.78MB 0.2s\n", + "\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.6s (12/19) \n", "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", + "\u001b[0m\u001b[34m => => transferring context: 29.06MB 0.3s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 8.2s\n", - "\u001b[2m => => # commended to use a virtual environment instead: https://pip.pypa.io/wa\n", - "\u001b[0m\u001b[2m => => # rnings/venv \n", - "\u001b[0m\u001b[2m => => # WARNING: You are using pip version 21.3.1; however, version 23.1.2 is \n", - "\u001b[0m\u001b[2m => => # available. \n", - "\u001b[0m\u001b[2m => => # You should consider upgrading via the '/opt/conda/bin/python3.8 -m pip\n", - "\u001b[0m\u001b[2m => => # install --upgrade pip' command. \n", - "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 10.6s (12/19) \n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.7s (13/19) \n", "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", + "\u001b[0m\u001b[34m => => transferring context: 29.06MB 0.3s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 8.3s\n", - "\u001b[2m => => # commended to use a virtual environment instead: https://pip.pypa.io/wa\n", - "\u001b[0m\u001b[2m => => # rnings/venv \n", - "\u001b[0m\u001b[2m => => # WARNING: You are using pip version 21.3.1; however, version 23.1.2 is \n", - "\u001b[0m\u001b[2m => => # available. \n", - "\u001b[0m\u001b[2m => => # You should consider upgrading via the '/opt/conda/bin/python3.8 -m pip\n", - "\u001b[0m\u001b[2m => => # install --upgrade pip' command. \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 10.8s (13/19) \n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.2s\n", + "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.9s (13/19) \n", "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", + "\u001b[0m\u001b[34m => => transferring context: 29.06MB 0.3s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 8.4s\n", - "\u001b[0m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", - " \n", - " \n", - " \n", - " \n", - " \n", - "\u001b[5A\u001b[0G\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 10.9s (14/19) \n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.3s\n", + "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.0s (14/19) \n", "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", + "\u001b[0m\u001b[34m => => transferring context: 29.06MB 0.3s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 8.4s\n", - "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.3s\n", "\u001b[0m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.1s\n", - "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 11.1s (14/19) \n", + "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.2s (14/19) \n", "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", + "\u001b[0m\u001b[34m => => transferring context: 29.06MB 0.3s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 8.4s\n", - "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", - "\u001b[0m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.2s\n", - "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 11.2s (14/19) \n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.3s\n", + "\u001b[0m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.3s\n", + "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.3s (14/19) \n", "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", + "\u001b[0m\u001b[34m => => transferring context: 29.06MB 0.3s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 8.4s\n", - "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.3s\n", "\u001b[0m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.4s\n", - "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 11.3s (15/19) \n", + "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.4s (15/19) \n", "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", + "\u001b[0m\u001b[34m => => transferring context: 29.06MB 0.3s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 8.4s\n", - "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", - "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", - "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 11.5s (16/19) \n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.3s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.6s\n", + "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.5s (16/19) \n", "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", + "\u001b[0m\u001b[34m => => transferring context: 29.06MB 0.3s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 8.4s\n", - "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", - "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.3s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.6s\n", "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", - "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 11.6s (17/19) \n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.7s (17/19) \n", "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", + "\u001b[0m\u001b[34m => => transferring context: 29.06MB 0.3s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 8.4s\n", - "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", - "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.3s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.6s\n", "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 11.7s (18/19) \n", + "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.8s (18/19) \n", "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", + "\u001b[0m\u001b[34m => => transferring context: 29.06MB 0.3s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 8.4s\n", - "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", - "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.3s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.6s\n", "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", - "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 11.8s (19/19) \n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.9s (19/19) \n", "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", + "\u001b[0m\u001b[34m => => transferring context: 29.06MB 0.3s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 8.4s\n", - "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", - "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.3s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.6s\n", "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.1s\n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 11.9s (19/20) \n", + "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.0s (19/20) \n", "\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", + "\u001b[0m\u001b[34m => => transferring context: 29.06MB 0.3s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 8.4s\n", - "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", - "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.3s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.6s\n", "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.1s\n", "\u001b[0m => exporting to image 0.1s\n", " => => exporting layers 0.1s\n", - "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 12.1s (19/20) \n", + "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.2s (19/20) \n", "\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", + "\u001b[0m\u001b[34m => => transferring context: 29.06MB 0.3s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 8.4s\n", - "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", - "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.3s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.6s\n", "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.1s\n", "\u001b[0m => exporting to image 0.3s\n", - " => => exporting layers 0.3s\n", - "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 12.2s (19/20) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 8.4s\n", - "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", - "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", - "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", - "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", - "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", - "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.1s\n", - "\u001b[0m => exporting to image 0.4s\n", - " => => exporting layers 0.4s\n", - "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 12.4s (19/20) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 8.4s\n", - "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", - "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", - "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", - "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", - "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", - "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.1s\n", - "\u001b[0m => exporting to image 0.6s\n", - " => => exporting layers 0.6s\n", - "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 12.5s (19/20) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 8.4s\n", - "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", - "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", - "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", - "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", - "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", - "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.1s\n", - "\u001b[0m => exporting to image 0.7s\n", - " => => exporting layers 0.7s\n", - "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 12.7s (19/20) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 8.4s\n", - "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", - "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", - "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", - "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", - "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", - "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.1s\n", - "\u001b[0m => exporting to image 0.9s\n", - " => => exporting layers 0.9s\n", - "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 12.8s (19/20) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 8.4s\n", - "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", - "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", - "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", - "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", - "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", - "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.1s\n", - "\u001b[0m => exporting to image 1.0s\n", - " => => exporting layers 1.0s\n", - "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 13.0s (19/20) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 8.4s\n", - "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", - "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", - "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", - "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", - "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", - "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.1s\n", - "\u001b[0m => exporting to image 1.2s\n", - " => => exporting layers 1.2s\n", - "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 13.1s (19/20) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 8.4s\n", - "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", - "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", - "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", - "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", - "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", - "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.1s\n", - "\u001b[0m => exporting to image 1.3s\n", - " => => exporting layers 1.3s\n", - "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 13.2s (19/20) \n", - "\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", + "\u001b[34m => => exporting layers 0.3s\n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.3s (20/20) \n", + "\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", + "\u001b[0m\u001b[34m => => transferring context: 29.06MB 0.3s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 8.4s\n", - "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", - "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.3s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.6s\n", "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.1s\n", - "\u001b[0m => exporting to image 1.5s\n", - "\u001b[34m => => exporting layers 1.4s\n", - "\u001b[0m\u001b[34m => => writing image sha256:3d02472c4d302e5c06fb62b5eba4f7f26fa91b209f822 0.0s\n", - "\u001b[0m => => naming to docker.io/library/mednist_app:latest 0.0s\n", - "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 13.4s (20/20) FINISHED \n", + "\u001b[0m\u001b[34m => exporting to image 0.3s\n", + "\u001b[0m\u001b[34m => => exporting layers 0.3s\n", + "\u001b[0m\u001b[34m => => writing image sha256:1d85a1e712404af578bc29f3b6f407a985d51cff510bd 0.0s\n", + "\u001b[0m\u001b[34m => => naming to docker.io/library/mednist_app:latest 0.0s\n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.3s (20/20) FINISHED \n", "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.48kB 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:21.07-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.03MB 0.3s\n", + "\u001b[0m\u001b[34m => => transferring context: 29.06MB 0.3s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /tmp/requirements.txt 0.6s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.1s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /tmp/requirements.tx 8.4s\n", - "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", - "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.3s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.6s\n", "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.1s\n", - "\u001b[0m\u001b[34m => exporting to image 1.5s\n", - "\u001b[0m\u001b[34m => => exporting layers 1.4s\n", - "\u001b[0m\u001b[34m => => writing image sha256:3d02472c4d302e5c06fb62b5eba4f7f26fa91b209f822 0.0s\n", + "\u001b[0m\u001b[34m => exporting to image 0.3s\n", + "\u001b[0m\u001b[34m => => exporting layers 0.3s\n", + "\u001b[0m\u001b[34m => => writing image sha256:1d85a1e712404af578bc29f3b6f407a985d51cff510bd 0.0s\n", "\u001b[0m\u001b[34m => => naming to docker.io/library/mednist_app:latest 0.0s\n", "\u001b[0m\u001b[?25Done\n", - "[2023-07-07 15:20:49,765] [INFO] (app_packager) - Successfully built mednist_app:latest\n" + "[2023-07-11 14:39:41,392] [INFO] (app_packager) - Successfully built mednist_app:latest\n" ] } ], @@ -2189,53 +607,29 @@ "\"mednist_app:latest\" found.\n", "\n", "Reading MONAI App Package manifest...\n", - "\u001b[sPreparing to copy...\u001b[?25l\u001b[u\u001b[2KCopying from container - 0B\u001b[?25h\u001b[u\u001b[2KSuccessfully copied 2.05kB to /tmp/tmp2ervelrn/app.json\n", - "\u001b[sPreparing to copy...\u001b[?25l\u001b[u\u001b[2KCopying from container - 0B\u001b[?25h\u001b[u\u001b[2KSuccessfully copied 2.05kB to /tmp/tmp2ervelrn/pkg.json\n", + "\u001b[sPreparing to copy...\u001b[?25l\u001b[u\u001b[2KCopying from container - 0B\u001b[?25h\u001b[u\u001b[2KSuccessfully copied 2.05kB to /tmp/tmpvdf4hnad/app.json\n", + "\u001b[sPreparing to copy...\u001b[?25l\u001b[u\u001b[2KCopying from container - 0B\u001b[?25h\u001b[u\u001b[2KSuccessfully copied 2.05kB to /tmp/tmpvdf4hnad/pkg.json\n", "--> Verifying if \"nvidia-docker\" is installed...\n", "\n", - "/opt/conda/lib/python3.8/site-packages/onnx/mapping.py:27: FutureWarning: In the future `np.object` will be defined as the corresponding NumPy scalar.\n", - " int(TensorProto.STRING): np.dtype(np.object)\n", - "/opt/conda/lib/python3.8/site-packages/onnx/mapping.py:27: FutureWarning: In the future `np.object` will be defined as the corresponding NumPy scalar.\n", - " int(TensorProto.STRING): np.dtype(np.object)\n", "/opt/conda/lib/python3.8/site-packages/scipy/__init__.py:138: UserWarning: A NumPy version >=1.16.5 and <1.23.0 is required for this version of SciPy (detected version 1.24.3)\n", " warnings.warn(f\"A NumPy version >={np_minversion} and <{np_maxversion} is required for this version of \"\n", - "/opt/conda/lib/python3.8/site-packages/skimage/morphology/_skeletonize.py:165: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar.\n", - " 0, 1, 1, 0, 0, 1, 0, 0, 0], dtype=np.bool)\n", - "/opt/conda/lib/python3.8/site-packages/onnx/mapping.py:27: FutureWarning: In the future `np.object` will be defined as the corresponding NumPy scalar.\n", - " int(TensorProto.STRING): np.dtype(np.object)\n", - "/opt/conda/lib/python3.8/site-packages/skimage/morphology/_skeletonize.py:165: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar.\n", - " 0, 1, 1, 0, 0, 1, 0, 0, 0], dtype=np.bool)\n", - "/opt/conda/lib/python3.8/site-packages/skimage/morphology/_skeletonize.py:165: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar.\n", - " 0, 1, 1, 0, 0, 1, 0, 0, 0], dtype=np.bool)\n", - "/opt/conda/lib/python3.8/site-packages/skimage/morphology/_skeletonize.py:165: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar.\n", - " 0, 1, 1, 0, 0, 1, 0, 0, 0], dtype=np.bool)\n", - "/opt/conda/lib/python3.8/site-packages/tensorboard/compat/tensorflow_stub/dtypes.py:569: FutureWarning: In the future `np.object` will be defined as the corresponding NumPy scalar.\n", - " (np.object, string),\n", - "/opt/conda/lib/python3.8/site-packages/tensorboard/compat/tensorflow_stub/dtypes.py:569: FutureWarning: In the future `np.object` will be defined as the corresponding NumPy scalar.\n", - " (np.object, string),\n", - "/opt/conda/lib/python3.8/site-packages/skimage/morphology/_skeletonize.py:165: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar.\n", - " 0, 1, 1, 0, 0, 1, 0, 0, 0], dtype=np.bool)\n", - "/opt/conda/lib/python3.8/site-packages/skimage/morphology/_skeletonize.py:165: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar.\n", - " 0, 1, 1, 0, 0, 1, 0, 0, 0], dtype=np.bool)\n", "\u001b[34mGoing to initiate execution of operator LoadPILOperator\u001b[39m\n", - "\u001b[32mExecuting operator LoadPILOperator \u001b[33m(Process ID: 1, Operator ID: 3bbc462e-d681-48ad-848a-3fd46573d97d)\u001b[39m\n", + "\u001b[32mExecuting operator LoadPILOperator \u001b[33m(Process ID: 1, Operator ID: 5ca4fdc7-8dd0-4eb8-8550-9d92b820f2da)\u001b[39m\n", "\u001b[34mDone performing execution of operator LoadPILOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator MedNISTClassifierOperator\u001b[39m\n", - "\u001b[32mExecuting operator MedNISTClassifierOperator \u001b[33m(Process ID: 1, Operator ID: e15c0a9a-3bd8-450e-b05c-90f2bcfb2702)\u001b[39m\n", + "\u001b[32mExecuting operator MedNISTClassifierOperator \u001b[33m(Process ID: 1, Operator ID: 9d624c54-86c3-48a7-b827-ef60030db8ea)\u001b[39m\n", "/root/.local/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:111: FutureWarning: : Class `AddChannel` has been deprecated since version 0.8. It will be removed in version 1.3. please use MetaTensor data type and monai.transforms.EnsureChannelFirst instead with `channel_dim='no_channel'`.\n", " warn_deprecated(obj, msg, warning_category)\n", - "/root/.local/lib/python3.8/site-packages/monai/data/meta_tensor.py:116: UserWarning: The given NumPy array is not writeable, and PyTorch does not support non-writeable tensors. This means you can write to the underlying (supposedly non-writeable) NumPy array using the tensor. You may want to copy the array to protect its data or make it writeable before converting it to a tensor. This type of warning will be suppressed for the rest of this program. (Triggered internally at /opt/pytorch/pytorch/torch/csrc/utils/tensor_numpy.cpp:175.)\n", - " return torch.as_tensor(x, *args, **_kwargs).as_subclass(cls) # type: ignore\n", "AbdomenCT\n", "\u001b[34mDone performing execution of operator MedNISTClassifierOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMTextSRWriterOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMTextSRWriterOperator \u001b[33m(Process ID: 1, Operator ID: 3d98ba36-be21-424b-9099-8550a96c5766)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMTextSRWriterOperator \u001b[33m(Process ID: 1, Operator ID: 0e037b51-3949-4738-a827-f57d2ba082f6)\u001b[39m\n", "/root/.local/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: Invalid value for VR UI: 'xyz'. Please see for allowed values for each VR.\n", " warnings.warn(msg)\n", - "[2023-07-07 22:21:06,751] [INFO] (root) - Finished writing DICOM instance to file /var/monai/output/1.2.826.0.1.3680043.8.498.40725823941127275307550545803440365708.dcm\n", - "[2023-07-07 22:21:06,753] [INFO] (monai.deploy.operators.dicom_text_sr_writer_operator.DICOMTextSRWriterOperator) - DICOM SOP instance saved in /var/monai/output/1.2.826.0.1.3680043.8.498.40725823941127275307550545803440365708.dcm\n", + "[2023-07-11 21:39:55,214] [INFO] (root) - Finished writing DICOM instance to file /var/monai/output/1.2.826.0.1.3680043.8.498.11147135660136449723298304060083219290.dcm\n", + "[2023-07-11 21:39:55,216] [INFO] (monai.deploy.operators.dicom_text_sr_writer_operator.DICOMTextSRWriterOperator) - DICOM SOP instance saved in /var/monai/output/1.2.826.0.1.3680043.8.498.11147135660136449723298304060083219290.dcm\n", "\u001b[34mDone performing execution of operator DICOMTextSRWriterOperator\n", "\u001b[39m\n" ] @@ -2429,7 +823,7 @@ "outputs": [], "source": [ "@md.resource(cpu=1, gpu=1, memory=\"1Gi\")\n", - "@md.env(pip_packages=[\"pydicom >= 2.3.0\", \"highdicom>=0.18.2\", \"typeguard~=2.12.1\"])\n", + "@md.env(pip_packages=[\"pydicom >= 2.3.0\", \"highdicom>=0.18.2\"]) # for the use of DICOM Writer operators\n", "class App(Application):\n", " \"\"\"Application class for the MedNIST classifier.\"\"\"\n", "\n", @@ -2476,11 +870,11 @@ "output_type": "stream", "text": [ "\u001b[34mGoing to initiate execution of operator LoadPILOperator\u001b[39m\n", - "\u001b[32mExecuting operator LoadPILOperator \u001b[33m(Process ID: 218063, Operator ID: 6dc4bf0b-ba63-42dd-9dc8-750a621673cb)\u001b[39m\n", + "\u001b[32mExecuting operator LoadPILOperator \u001b[33m(Process ID: 409880, Operator ID: 06991530-662d-46eb-83f2-e8e1368c4bb1)\u001b[39m\n", "\u001b[34mDone performing execution of operator LoadPILOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator MedNISTClassifierOperator\u001b[39m\n", - "\u001b[32mExecuting operator MedNISTClassifierOperator \u001b[33m(Process ID: 218063, Operator ID: 6d605c4c-098c-4847-9aac-8de511db1d6e)\u001b[39m\n" + "\u001b[32mExecuting operator MedNISTClassifierOperator \u001b[33m(Process ID: 409880, Operator ID: 1c4a4293-869f-4843-83f0-2c857c3bde96)\u001b[39m\n" ] }, { @@ -2648,7 +1042,7 @@ "\n", "\n", "@md.resource(cpu=1, gpu=1, memory=\"1Gi\")\n", - "@md.env(pip_packages=[\"pydicom >= 2.3.0\", \"highdicom>=0.18.2\", \"typeguard~=2.12.1\"])\n", + "@md.env(pip_packages=[\"pydicom >= 2.3.0\", \"highdicom>=0.18.2\"]) # for the use of DICOM Writer operators\n", "class App(Application):\n", " \"\"\"Application class for the MedNIST classifier.\"\"\"\n", "\n", @@ -2680,11 +1074,11 @@ "output_type": "stream", "text": [ "\u001b[34mGoing to initiate execution of operator LoadPILOperator\u001b[39m\n", - "\u001b[32mExecuting operator LoadPILOperator \u001b[33m(Process ID: 218956, Operator ID: 916fd7ea-c304-4838-8432-432f00adc3ed)\u001b[39m\n", + "\u001b[32mExecuting operator LoadPILOperator \u001b[33m(Process ID: 410692, Operator ID: c6ecd716-26ef-4706-8cd4-11fc7f3179bb)\u001b[39m\n", "\u001b[34mDone performing execution of operator LoadPILOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator MedNISTClassifierOperator\u001b[39m\n", - "\u001b[32mExecuting operator MedNISTClassifierOperator \u001b[33m(Process ID: 218956, Operator ID: acd4cbb1-fda5-46af-b582-e1d5f097509a)\u001b[39m\n", + "\u001b[32mExecuting operator MedNISTClassifierOperator \u001b[33m(Process ID: 410692, Operator ID: 7b972a34-7f9b-472e-ad4c-394526e9c20b)\u001b[39m\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:111: FutureWarning: : Class `AddChannel` has been deprecated since version 0.8. It will be removed in version 1.3. please use MetaTensor data type and monai.transforms.EnsureChannelFirst instead with `channel_dim='no_channel'`.\n", " warn_deprecated(obj, msg, warning_category)\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/data/meta_tensor.py:116: UserWarning: The given NumPy array is not writable, and PyTorch does not support non-writable tensors. This means writing to this tensor will result in undefined behavior. You may want to copy the array to protect its data or make it writable before converting it to a tensor. This type of warning will be suppressed for the rest of this program. (Triggered internally at ../torch/csrc/utils/tensor_numpy.cpp:206.)\n", @@ -2716,11 +1110,11 @@ "output_type": "stream", "text": [ "\u001b[34mGoing to initiate execution of operator LoadPILOperator\u001b[39m\n", - "\u001b[32mExecuting operator LoadPILOperator \u001b[33m(Process ID: 218997, Operator ID: ef2bf75e-54b8-4f59-b55f-d95f63be00c9)\u001b[39m\n", + "\u001b[32mExecuting operator LoadPILOperator \u001b[33m(Process ID: 410750, Operator ID: 91aa8bda-4a3b-47fd-b393-13181eb69e2c)\u001b[39m\n", "\u001b[34mDone performing execution of operator LoadPILOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator MedNISTClassifierOperator\u001b[39m\n", - "\u001b[32mExecuting operator MedNISTClassifierOperator \u001b[33m(Process ID: 218997, Operator ID: 66b63852-3ffb-46a8-b60d-ccd4cc37a97b)\u001b[39m\n", + "\u001b[32mExecuting operator MedNISTClassifierOperator \u001b[33m(Process ID: 410750, Operator ID: e085c688-f8d2-4896-899a-3905105e40e8)\u001b[39m\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:111: FutureWarning: : Class `AddChannel` has been deprecated since version 0.8. It will be removed in version 1.3. please use MetaTensor data type and monai.transforms.EnsureChannelFirst instead with `channel_dim='no_channel'`.\n", " warn_deprecated(obj, msg, warning_category)\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/data/meta_tensor.py:116: UserWarning: The given NumPy array is not writable, and PyTorch does not support non-writable tensors. This means writing to this tensor will result in undefined behavior. You may want to copy the array to protect its data or make it writable before converting it to a tensor. This type of warning will be suppressed for the rest of this program. (Triggered internally at ../torch/csrc/utils/tensor_numpy.cpp:206.)\n", diff --git a/notebooks/tutorials/02_mednist_app.ipynb b/notebooks/tutorials/02_mednist_app.ipynb index e5635f6f..e9e869a0 100644 --- a/notebooks/tutorials/02_mednist_app.ipynb +++ b/notebooks/tutorials/02_mednist_app.ipynb @@ -29,28 +29,17 @@ "cell_type": "code", "execution_count": 1, "metadata": {}, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Traceback (most recent call last):\n", - " File \"\", line 1, in \n", - "ModuleNotFoundError: No module named 'ignite'\n" - ] - } - ], + "outputs": [], "source": [ "# Install necessary packages for MONAI Core\n", "!python -c \"import monai\" || pip install -q \"monai[pillow, tqdm]\"\n", "!python -c \"import ignite\" || pip install -q \"monai[ignite]\"\n", "!python -c \"import gdown\" || pip install -q \"monai[gdown]\"\n", "!python -c \"import pydicom\" || pip install -q \"pydicom>=1.4.2\"\n", - "!python -c \"import highdicom\" || pip install -q \"highdicom>=0.18.2\"\n", - "!python -c \"import typeguard\" || pip install -q \"typeguard~=2.12.1\"\n", + "!python -c \"import highdicom\" || pip install -q \"highdicom>=0.18.2\" # for the use of DICOM Writer operators\n", "\n", "# Install MONAI Deploy App SDK package\n", - "!python -c \"import monai.deploy\" || pip install -q \"monai-deploy-app-sdk\"" + "!python -c \"import monai.deploy\" || pip install --upgrade -q \"monai-deploy-app-sdk\"" ] }, { @@ -172,7 +161,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "/tmp/tmpxonk2ze8\n" + "/tmp/tmp00iaib5g\n" ] }, { @@ -181,18 +170,16 @@ "text": [ "Downloading...\n", "From (uriginal): https://drive.google.com/uc?id=1QsnnkvZyJPcbRoV_ArW8SnE1OTuoVbKE\n", - "From (redirected): https://drive.google.com/uc?id=1QsnnkvZyJPcbRoV_ArW8SnE1OTuoVbKE&confirm=t&uuid=c333f09c-1059-49b2-8c23-80b641052a34\n", - "To: /tmp/tmp98s7d03b/MedNIST.tar.gz\n", - "100%|██████████| 61.8M/61.8M [00:02<00:00, 24.7MB/s]" + "From (redirected): https://drive.google.com/uc?id=1QsnnkvZyJPcbRoV_ArW8SnE1OTuoVbKE&confirm=t&uuid=79a11612-ee21-4913-81f7-1db5840c71af\n", + "To: /tmp/tmpgf67zvcd/MedNIST.tar.gz\n", + "100%|██████████| 61.8M/61.8M [00:01<00:00, 58.3MB/s]" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "2023-07-07 11:30:00,276 - INFO - Downloaded: /tmp/tmpxonk2ze8/MedNIST.tar.gz\n", - "2023-07-07 11:30:00,381 - INFO - Verified 'MedNIST.tar.gz', md5: 0bc7306e7427e00ad1c5526a6677552d.\n", - "2023-07-07 11:30:00,382 - INFO - Writing into directory: /tmp/tmpxonk2ze8.\n" + "2023-07-11 12:21:48,269 - INFO - Downloaded: /tmp/tmp00iaib5g/MedNIST.tar.gz\n" ] }, { @@ -201,6 +188,14 @@ "text": [ "\n" ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "2023-07-11 12:21:48,376 - INFO - Verified 'MedNIST.tar.gz', md5: 0bc7306e7427e00ad1c5526a6677552d.\n", + "2023-07-11 12:21:48,377 - INFO - Writing into directory: /tmp/tmp00iaib5g.\n" + ] } ], "source": [ @@ -580,7 +575,7 @@ "outputs": [], "source": [ "@md.resource(cpu=1, gpu=1, memory=\"1Gi\")\n", - "@md.env(pip_packages=[\"pydicom >= 2.3.0\", \"highdicom>=0.18.2\", \"typeguard~=2.12.1\"])\n", + "@md.env(pip_packages=[\"pydicom >= 2.3.0\", \"highdicom>=0.18.2\"]) # for the use of DICOM Writer operators\n", "class App(Application):\n", " \"\"\"Application class for the MedNIST classifier.\"\"\"\n", "\n", @@ -609,7 +604,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "Test input file path: /tmp/tmpxonk2ze8/MedNIST/AbdomenCT/001420.jpeg\n" + "Test input file path: /tmp/tmp00iaib5g/MedNIST/AbdomenCT/001420.jpeg\n" ] } ], @@ -644,11 +639,11 @@ "output_type": "stream", "text": [ "\u001b[34mGoing to initiate execution of operator LoadPILOperator\u001b[39m\n", - "\u001b[32mExecuting operator LoadPILOperator \u001b[33m(Process ID: 205054, Operator ID: 1a252166-c88c-4cf8-9d2a-39a79082e8fb)\u001b[39m\n", + "\u001b[32mExecuting operator LoadPILOperator \u001b[33m(Process ID: 393049, Operator ID: c60f371c-73bc-4bb7-aaa6-30d04f2ff280)\u001b[39m\n", "\u001b[34mDone performing execution of operator LoadPILOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator MedNISTClassifierOperator\u001b[39m\n", - "\u001b[32mExecuting operator MedNISTClassifierOperator \u001b[33m(Process ID: 205054, Operator ID: dc5e3d77-a841-4c88-8681-4353a37f509f)\u001b[39m\n" + "\u001b[32mExecuting operator MedNISTClassifierOperator \u001b[33m(Process ID: 393049, Operator ID: 6e94713f-4e1d-4ec4-ae69-8305e8b02b7f)\u001b[39m\n" ] }, { @@ -814,7 +809,7 @@ "\n", "\n", "@md.resource(cpu=1, gpu=1, memory=\"1Gi\")\n", - "@md.env(pip_packages=[\"pydicom >= 2.3.0\", \"highdicom>=0.18.2\", \"typeguard~=2.12.1\"])\n", + "@md.env(pip_packages=[\"pydicom >= 2.3.0\", \"highdicom>=0.18.2\"]) # for the use of DICOM Writer operators\n", "class App(Application):\n", " \"\"\"Application class for the MedNIST classifier.\"\"\"\n", "\n", @@ -846,11 +841,11 @@ "output_type": "stream", "text": [ "\u001b[34mGoing to initiate execution of operator LoadPILOperator\u001b[39m\n", - "\u001b[32mExecuting operator LoadPILOperator \u001b[33m(Process ID: 206708, Operator ID: 9d0020e1-b606-4d18-97a3-38bda88ddf5a)\u001b[39m\n", + "\u001b[32mExecuting operator LoadPILOperator \u001b[33m(Process ID: 394647, Operator ID: 9502cae2-e14b-4c3f-be35-57dc9289ea89)\u001b[39m\n", "\u001b[34mDone performing execution of operator LoadPILOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator MedNISTClassifierOperator\u001b[39m\n", - "\u001b[32mExecuting operator MedNISTClassifierOperator \u001b[33m(Process ID: 206708, Operator ID: dc48d554-06e9-4cf3-849b-81e5b2b05161)\u001b[39m\n", + "\u001b[32mExecuting operator MedNISTClassifierOperator \u001b[33m(Process ID: 394647, Operator ID: 66c5dc76-5e54-4a46-9a23-c0c6a70f36af)\u001b[39m\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:111: FutureWarning: : Class `AddChannel` has been deprecated since version 0.8. It will be removed in version 1.3. please use MetaTensor data type and monai.transforms.EnsureChannelFirst instead with `channel_dim='no_channel'`.\n", " warn_deprecated(obj, msg, warning_category)\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/data/meta_tensor.py:116: UserWarning: The given NumPy array is not writable, and PyTorch does not support non-writable tensors. This means writing to this tensor will result in undefined behavior. You may want to copy the array to protect its data or make it writable before converting it to a tensor. This type of warning will be suppressed for the rest of this program. (Triggered internally at ../torch/csrc/utils/tensor_numpy.cpp:206.)\n", @@ -882,11 +877,11 @@ "output_type": "stream", "text": [ "\u001b[34mGoing to initiate execution of operator LoadPILOperator\u001b[39m\n", - "\u001b[32mExecuting operator LoadPILOperator \u001b[33m(Process ID: 206762, Operator ID: 7186d073-9f57-4f3e-9cdc-71e9e12c5fa1)\u001b[39m\n", + "\u001b[32mExecuting operator LoadPILOperator \u001b[33m(Process ID: 394701, Operator ID: c0d3561c-6274-4953-a642-8265c6a65bc9)\u001b[39m\n", "\u001b[34mDone performing execution of operator LoadPILOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator MedNISTClassifierOperator\u001b[39m\n", - "\u001b[32mExecuting operator MedNISTClassifierOperator \u001b[33m(Process ID: 206762, Operator ID: 4ff27f74-2a4e-489d-b813-86b70876208e)\u001b[39m\n", + "\u001b[32mExecuting operator MedNISTClassifierOperator \u001b[33m(Process ID: 394701, Operator ID: 77db8991-6777-4c06-b28f-670b856193e4)\u001b[39m\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:111: FutureWarning: : Class `AddChannel` has been deprecated since version 0.8. It will be removed in version 1.3. please use MetaTensor data type and monai.transforms.EnsureChannelFirst instead with `channel_dim='no_channel'`.\n", " warn_deprecated(obj, msg, warning_category)\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/data/meta_tensor.py:116: UserWarning: The given NumPy array is not writable, and PyTorch does not support non-writable tensors. This means writing to this tensor will result in undefined behavior. You may want to copy the array to protect its data or make it writable before converting it to a tensor. This type of warning will be suppressed for the rest of this program. (Triggered internally at ../torch/csrc/utils/tensor_numpy.cpp:206.)\n", @@ -941,68 +936,63 @@ "name": "stdout", "output_type": "stream", "text": [ - "Building MONAI Application Package... -\u001b[1A\u001b[1B\u001b[0G\u001b[?25l[+] Building 0.0s (0/2) \n", - "\u001b[?25h\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.1s (3/15) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "Building MONAI Application Package... -\u001b[1A\u001b[1B\u001b[0G\u001b[?25l[+] Building 0.0s (0/1) \n", + "\u001b[?25\\\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.1s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.2s (4/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m => [internal] load build context 0.1s\n", - " => => transferring context: 12.42MB 0.1s\n", - "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.3s (4/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + " => => transferring context: 23B 0.1s\n", + "\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.3s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m => [internal] load build context 0.2s\n", - " => => transferring context: 29.00MB 0.2s\n", - "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.5s (9/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.4s (9/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m => [ 6/15] COPY ./models /opt/monai/models 0.1s\n", - "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.6s (10/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.5s (10/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.8s (11/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", + "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.7s (11/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", @@ -1010,15 +1000,15 @@ "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", "\u001b[0m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.1s\n", - "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.9s (11/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.8s (11/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", @@ -1026,15 +1016,15 @@ "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", "\u001b[0m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.3s\n", - "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.1s (11/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.0s (11/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", @@ -1048,37 +1038,37 @@ "\u001b[0m\u001b[2m => => # Speed \n", "\u001b[0m\u001b[2m => => # 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:\n", "\u001b[0m\u001b[2m => => # -- 0 \n", - "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.2s (11/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.1s (11/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.6s\n", - "\u001b[2m => => # % Total % Received % Xferd Average Speed Time Time Time\n", - "\u001b[0m\u001b[2m => => # Current \n", + "\u001b[0m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.5s\n", + "\u001b[2m => => # Current \n", "\u001b[0m\u001b[2m => => # Dload Upload Total Spent Left\n", "\u001b[0m\u001b[2m => => # Speed \n", "\u001b[0m\u001b[2m => => # 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:\n", - "\u001b[0m\u001b[2m => => # -- 0 \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.4s (11/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[2m => => # 100 11.9M 100 11.9M 0 0 59.0M 0 --:--:-- --:--:-- --:--:\n", + "\u001b[0m\u001b[2m => => # -- 59.0M \n", + "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.3s (11/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", @@ -1092,1250 +1082,1301 @@ "\u001b[0m\u001b[2m => => # spec \n", "\u001b[0m\u001b[2m => => # inflating: /opt/monai/executor/executor_pkg/lib/native/linux-x64/mon\n", "\u001b[0m\u001b[2m => => # ai-exec \n", - "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.5s (11/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.4s (11/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", - "\u001b[2m => => # Archive: /opt/monai/executor/executor.zip \n", - "\u001b[0m\u001b[2m => => # inflating: /opt/monai/executor/executor_pkg/_rels/.rels \n", - "\u001b[0m\u001b[2m => => # inflating: /opt/monai/executor/executor_pkg/Monai.Deploy.Executor.nu\n", - "\u001b[0m\u001b[2m => => # spec \n", - "\u001b[0m\u001b[2m => => # inflating: /opt/monai/executor/executor_pkg/lib/native/linux-x64/mon\n", - "\u001b[0m\u001b[2m => => # ai-exec \n", - "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.7s (11/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.8s\n", "\u001b[2m => => # inflating: /opt/monai/executor/executor_pkg/lib/native/linux-x64/mon\n", "\u001b[0m\u001b[2m => => # ai-exec \n", "\u001b[0m\u001b[2m => => # inflating: /opt/monai/executor/executor_pkg/[Content_Types].xml \n", "\u001b[0m\u001b[2m => => # inflating: /opt/monai/executor/executor_pkg/package/services/metadat\n", "\u001b[0m\u001b[2m => => # a/core-properties/c09c14c8557342a7b41ac545107c1263.psmdcp \n", "\u001b[0m\u001b[2m => => # extracting: /opt/monai/executor/executor_pkg/.signature.p7s \n", - "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.8s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.6s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 0.1s\n", " \n", " \n", " \n", " \n", " \n", - "\u001b[5A\u001b[0G\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.0s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[5A\u001b[0G\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.7s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 0.3s\n", - "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.1s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 0.2s\n", + "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.9s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 0.4s\n", - "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.3s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.0s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 0.6s\n", - "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.4s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 0.5s\n", + "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.2s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 0.7s\n", - "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.6s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.3s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 0.9s\n", - "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.7s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 0.8s\n", + "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.5s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 1.0s\n", - "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.9s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[2m => => # Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.c\n", + "\u001b[0m\u001b[2m => => # om \n", + "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.6s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 1.2s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 1.1s\n", "\u001b[2m => => # Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.c\n", "\u001b[0m\u001b[2m => => # om \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.0s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.7s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 1.3s\n", "\u001b[2m => => # Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.c\n", "\u001b[0m\u001b[2m => => # om \n", "\u001b[0m\u001b[2m => => # Collecting pydicom>=2.3.0 \n", - "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.1s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[2m => => # Downloading pydicom-2.4.1-py3-none-any.whl (1.8 MB) \n", + "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.9s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 1.4s\n", "\u001b[2m => => # Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.c\n", "\u001b[0m\u001b[2m => => # om \n", "\u001b[0m\u001b[2m => => # Collecting pydicom>=2.3.0 \n", "\u001b[0m\u001b[2m => => # Downloading pydicom-2.4.1-py3-none-any.whl (1.8 MB) \n", - "\u001b[0m\u001b[2m => => # ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 44.1 MB/s eta\n", + "\u001b[0m\u001b[2m => => # ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 25.5 MB/s eta\n", "\u001b[0m\u001b[2m => => # 0:00:00 \n", - "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.3s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.0s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 1.6s\n", "\u001b[2m => => # Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.c\n", "\u001b[0m\u001b[2m => => # om \n", "\u001b[0m\u001b[2m => => # Collecting pydicom>=2.3.0 \n", "\u001b[0m\u001b[2m => => # Downloading pydicom-2.4.1-py3-none-any.whl (1.8 MB) \n", - "\u001b[0m\u001b[2m => => # ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 44.1 MB/s eta\n", + "\u001b[0m\u001b[2m => => # ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 25.5 MB/s eta\n", "\u001b[0m\u001b[2m => => # 0:00:00 \n", - "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.4s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.1s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 1.7s\n", "\u001b[2m => => # Collecting pydicom>=2.3.0 \n", "\u001b[0m\u001b[2m => => # Downloading pydicom-2.4.1-py3-none-any.whl (1.8 MB) \n", - "\u001b[0m\u001b[2m => => # ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 44.1 MB/s eta\n", + "\u001b[0m\u001b[2m => => # ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 25.5 MB/s eta\n", "\u001b[0m\u001b[2m => => # 0:00:00 \n", "\u001b[0m\u001b[2m => => # Collecting highdicom>=0.18.2 \n", "\u001b[0m\u001b[2m => => # Downloading highdicom-0.21.1-py3-none-any.whl (807 kB) \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.5s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.3s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 1.8s\n", - "\u001b[2m => => # ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 44.1 MB/s eta\n", - "\u001b[0m\u001b[2m => => # 0:00:00 \n", - "\u001b[0m\u001b[2m => => # Collecting highdicom>=0.18.2 \n", + "\u001b[2m => => # Collecting highdicom>=0.18.2 \n", "\u001b[0m\u001b[2m => => # Downloading highdicom-0.21.1-py3-none-any.whl (807 kB) \n", - "\u001b[0m\u001b[2m => => # ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 807.1/807.1 kB 26.3 MB/s e\n", + "\u001b[0m\u001b[2m => => # ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 807.1/807.1 kB 15.6 MB/s e\n", "\u001b[0m\u001b[2m => => # ta 0:00:00 \n", - "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.7s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: pillow in /opt/conda/lib/python3.8/site\n", + "\u001b[0m\u001b[2m => => # -packages (from -r /opt/monai/app/requirements.txt (line 3)) (9.0.1) \n", + "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.4s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 2.0s\n", - "\u001b[2m => => # ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 807.1/807.1 kB 26.3 MB/s e\n", + "\u001b[2m => => # Collecting highdicom>=0.18.2 \n", + "\u001b[0m\u001b[2m => => # Downloading highdicom-0.21.1-py3-none-any.whl (807 kB) \n", + "\u001b[0m\u001b[2m => => # ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 807.1/807.1 kB 15.6 MB/s e\n", "\u001b[0m\u001b[2m => => # ta 0:00:00 \n", - "\u001b[0m\u001b[2m => => # Collecting typeguard~=2.12.1 \n", - "\u001b[0m\u001b[2m => => # Downloading typeguard-2.12.1-py3-none-any.whl (17 kB) \n", "\u001b[0m\u001b[2m => => # Requirement already satisfied: pillow in /opt/conda/lib/python3.8/site\n", - "\u001b[0m\u001b[2m => => # -packages (from -r /opt/monai/app/requirements.txt (line 4)) (9.0.1) \n", - "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.8s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[2m => => # -packages (from -r /opt/monai/app/requirements.txt (line 3)) (9.0.1) \n", + "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.6s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 2.1s\n", - "\u001b[2m => => # ta 0:00:00 \n", - "\u001b[0m\u001b[2m => => # Collecting typeguard~=2.12.1 \n", - "\u001b[0m\u001b[2m => => # Downloading typeguard-2.12.1-py3-none-any.whl (17 kB) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: pillow in /opt/conda/lib/python3.8/site\n", - "\u001b[0m\u001b[2m => => # -packages (from -r /opt/monai/app/requirements.txt (line 4)) (9.0.1) \n", - "\u001b[0m\u001b[2m => => # Collecting monai \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.9s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[2m => => # Requirement already satisfied: networkx>=2.4 in /opt/conda/lib/python3\n", + "\u001b[0m\u001b[2m => => # .8/site-packages (from -r /opt/monai/app/requirements.txt (line 6)) (2\n", + "\u001b[0m\u001b[2m => => # .6.3) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: colorama>=0.4.1 in /opt/conda/lib/pytho\n", + "\u001b[0m\u001b[2m => => # n3.8/site-packages (from -r /opt/monai/app/requirements.txt (line 7)) \n", + "\u001b[0m\u001b[2m => => # (0.4.5) \n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.7s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 2.2s\n", - "\u001b[2m => => # Requirement already satisfied: pillow in /opt/conda/lib/python3.8/site\n", - "\u001b[0m\u001b[2m => => # -packages (from -r /opt/monai/app/requirements.txt (line 4)) (9.0.1) \n", - "\u001b[0m\u001b[2m => => # Collecting monai \n", - "\u001b[0m\u001b[2m => => # Downloading monai-1.2.0-202306081546-py3-none-any.whl (1.3 MB) \n", - "\u001b[0m\u001b[2m => => # ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.3/1.3 MB 103.9 MB/s et\n", - "\u001b[0m\u001b[2m => => # a 0:00:00 \n", - "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.1s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[2m => => # .8/site-packages (from -r /opt/monai/app/requirements.txt (line 6)) (2\n", + "\u001b[0m\u001b[2m => => # .6.3) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: colorama>=0.4.1 in /opt/conda/lib/pytho\n", + "\u001b[0m\u001b[2m => => # n3.8/site-packages (from -r /opt/monai/app/requirements.txt (line 7)) \n", + "\u001b[0m\u001b[2m => => # (0.4.5) \n", + "\u001b[0m\u001b[2m => => # Collecting typeguard>=3.0.0 \n", + "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.9s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 2.4s\n", - "\u001b[2m => => # Requirement already satisfied: networkx>=2.4 in /opt/conda/lib/python3\n", - "\u001b[0m\u001b[2m => => # .8/site-packages (from -r /opt/monai/app/requirements.txt (line 7)) (2\n", - "\u001b[0m\u001b[2m => => # .6.3) \n", + "\u001b[2m => => # .6.3) \n", "\u001b[0m\u001b[2m => => # Requirement already satisfied: colorama>=0.4.1 in /opt/conda/lib/pytho\n", - "\u001b[0m\u001b[2m => => # n3.8/site-packages (from -r /opt/monai/app/requirements.txt (line 8)) \n", + "\u001b[0m\u001b[2m => => # n3.8/site-packages (from -r /opt/monai/app/requirements.txt (line 7)) \n", "\u001b[0m\u001b[2m => => # (0.4.5) \n", - "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.2s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[2m => => # Collecting typeguard>=3.0.0 \n", + "\u001b[0m\u001b[2m => => # Downloading typeguard-4.0.0-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.0s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 2.5s\n", - "\u001b[2m => => # Requirement already satisfied: networkx>=2.4 in /opt/conda/lib/python3\n", - "\u001b[0m\u001b[2m => => # .8/site-packages (from -r /opt/monai/app/requirements.txt (line 7)) (2\n", - "\u001b[0m\u001b[2m => => # .6.3) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: colorama>=0.4.1 in /opt/conda/lib/pytho\n", - "\u001b[0m\u001b[2m => => # n3.8/site-packages (from -r /opt/monai/app/requirements.txt (line 8)) \n", + "\u001b[2m => => # Requirement already satisfied: colorama>=0.4.1 in /opt/conda/lib/pytho\n", + "\u001b[0m\u001b[2m => => # n3.8/site-packages (from -r /opt/monai/app/requirements.txt (line 7)) \n", "\u001b[0m\u001b[2m => => # (0.4.5) \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.4s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[2m => => # Collecting typeguard>=3.0.0 \n", + "\u001b[0m\u001b[2m => => # Downloading typeguard-4.0.0-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Collecting pillow-jpls>=1.0 \n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.1s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 2.7s\n", - "\u001b[2m => => # (0.4.5) \n", - "\u001b[0m\u001b[2m => => # Collecting pillow-jpls>=1.0 \n", - "\u001b[0m\u001b[2m => => # Downloading pillow_jpls-1.2.0-cp38-cp38-manylinux_2_17_x86_64.manyli\n", - "\u001b[0m\u001b[2m => => # nux2014_x86_64.whl (340 kB) \n", - "\u001b[0m\u001b[2m => => # ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 340.3/340.3 kB 157.8 MB/s e\n", - "\u001b[0m\u001b[2m => => # ta 0:00:00 \n", - "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.5s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 2.6s\n", + "\u001b[2m => => # Requirement already satisfied: torch>=1.9 in /opt/conda/lib/python3.8/\n", + "\u001b[0m\u001b[2m => => # site-packages (from monai->-r /opt/monai/app/requirements.txt (line 4)\n", + "\u001b[0m\u001b[2m => => # ) (1.13.0a0+d321be6) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: importlib-metadata>=3.6 in /opt/conda/l\n", + "\u001b[0m\u001b[2m => => # ib/python3.8/site-packages (from typeguard>=3.0.0->-r /opt/monai/app/r\n", + "\u001b[0m\u001b[2m => => # equirements.txt (line 8)) (4.12.0) \n", + "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.3s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 2.8s\n", "\u001b[2m => => # Requirement already satisfied: torch>=1.9 in /opt/conda/lib/python3.8/\n", - "\u001b[0m\u001b[2m => => # site-packages (from monai->-r /opt/monai/app/requirements.txt (line 5)\n", + "\u001b[0m\u001b[2m => => # site-packages (from monai->-r /opt/monai/app/requirements.txt (line 4)\n", "\u001b[0m\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.7s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: importlib-metadata>=3.6 in /opt/conda/l\n", + "\u001b[0m\u001b[2m => => # ib/python3.8/site-packages (from typeguard>=3.0.0->-r /opt/monai/app/r\n", + "\u001b[0m\u001b[2m => => # equirements.txt (line 8)) (4.12.0) \n", + "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.4s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 3.0s\n", - "\u001b[2m => => # Requirement already satisfied: torch>=1.9 in /opt/conda/lib/python3.8/\n", - "\u001b[0m\u001b[2m => => # site-packages (from monai->-r /opt/monai/app/requirements.txt (line 5)\n", - "\u001b[0m\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.8s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 2.9s\n", + "\u001b[2m => => # equirements.txt (line 8)) (4.12.0) \n", + "\u001b[0m\u001b[2m => => # Collecting typing-extensions>=4.4.0 \n", + "\u001b[0m\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.6s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 3.1s\n", - "\u001b[2m => => # Requirement already satisfied: torch>=1.9 in /opt/conda/lib/python3.8/\n", - "\u001b[0m\u001b[2m => => # site-packages (from monai->-r /opt/monai/app/requirements.txt (line 5)\n", - "\u001b[0m\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.0s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[2m => => # equirements.txt (line 8)) (4.12.0) \n", + "\u001b[0m\u001b[2m => => # Collecting typing-extensions>=4.4.0 \n", + "\u001b[0m\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.7s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 3.3s\n", - "\u001b[2m => => # Requirement already satisfied: torch>=1.9 in /opt/conda/lib/python3.8/\n", - "\u001b[0m\u001b[2m => => # site-packages (from monai->-r /opt/monai/app/requirements.txt (line 5)\n", - "\u001b[0m\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.1s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 3.2s\n", + "\u001b[2m => => # equirements.txt (line 8)) (4.12.0) \n", + "\u001b[0m\u001b[2m => => # Collecting typing-extensions>=4.4.0 \n", + "\u001b[0m\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.9s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 3.4s\n", - "\u001b[2m => => # Requirement already satisfied: torch>=1.9 in /opt/conda/lib/python3.8/\n", - "\u001b[0m\u001b[2m => => # site-packages (from monai->-r /opt/monai/app/requirements.txt (line 5)\n", - "\u001b[0m\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.3s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[2m => => # equirements.txt (line 8)) (4.12.0) \n", + "\u001b[0m\u001b[2m => => # Collecting typing-extensions>=4.4.0 \n", + "\u001b[0m\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.0s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 3.6s\n", - "\u001b[2m => => # Requirement already satisfied: torch>=1.9 in /opt/conda/lib/python3.8/\n", - "\u001b[0m\u001b[2m => => # site-packages (from monai->-r /opt/monai/app/requirements.txt (line 5)\n", - "\u001b[0m\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.4s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 3.5s\n", + "\u001b[2m => => # equirements.txt (line 8)) (4.12.0) \n", + "\u001b[0m\u001b[2m => => # Collecting typing-extensions>=4.4.0 \n", + "\u001b[0m\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.2s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 3.7s\n", - "\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: typeguard, pydicom, pillow-jpls, monai,\n", - "\u001b[0m\u001b[2m => => # highdicom \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.5s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[2m => => # equirements.txt (line 8)) (4.12.0) \n", + "\u001b[0m\u001b[2m => => # Collecting typing-extensions>=4.4.0 \n", + "\u001b[0m\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.3s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 3.9s\n", - "\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: typeguard, pydicom, pillow-jpls, monai,\n", - "\u001b[0m\u001b[2m => => # highdicom \n", - "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.7s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 3.8s\n", + "\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[2m => => # Installing collected packages: typing-extensions, pydicom, pillow-jpls\n", + "\u001b[0m\u001b[2m => => # , typeguard, highdicom, monai \n", + "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.4s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 4.0s\n", - "\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: typeguard, pydicom, pillow-jpls, monai,\n", - "\u001b[0m\u001b[2m => => # highdicom \n", - "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.8s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[2m => => # Installing collected packages: typing-extensions, pydicom, pillow-jpls\n", + "\u001b[0m\u001b[2m => => # , typeguard, highdicom, monai \n", + "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.6s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 4.2s\n", - "\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: typeguard, pydicom, pillow-jpls, monai,\n", - "\u001b[0m\u001b[2m => => # highdicom \n", - "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.0s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 4.1s\n", + "\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[2m => => # Installing collected packages: typing-extensions, pydicom, pillow-jpls\n", + "\u001b[0m\u001b[2m => => # , typeguard, highdicom, monai \n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.7s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 4.3s\n", - "\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: typeguard, pydicom, pillow-jpls, monai,\n", - "\u001b[0m\u001b[2m => => # highdicom \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.1s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[2m => => # Installing collected packages: typing-extensions, pydicom, pillow-jpls\n", + "\u001b[0m\u001b[2m => => # , typeguard, highdicom, monai \n", + "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.9s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 4.5s\n", - "\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: typeguard, pydicom, pillow-jpls, monai,\n", - "\u001b[0m\u001b[2m => => # highdicom \n", - "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.3s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 4.4s\n", + "\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[2m => => # Installing collected packages: typing-extensions, pydicom, pillow-jpls\n", + "\u001b[0m\u001b[2m => => # , typeguard, highdicom, monai \n", + "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.0s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 4.6s\n", - "\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: typeguard, pydicom, pillow-jpls, monai,\n", - "\u001b[0m\u001b[2m => => # highdicom \n", - "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.4s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[2m => => # Installing collected packages: typing-extensions, pydicom, pillow-jpls\n", + "\u001b[0m\u001b[2m => => # , typeguard, highdicom, monai \n", + "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.2s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 4.8s\n", - "\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: typeguard, pydicom, pillow-jpls, monai,\n", - "\u001b[0m\u001b[2m => => # highdicom \n", - "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.6s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 4.7s\n", + "\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[2m => => # Installing collected packages: typing-extensions, pydicom, pillow-jpls\n", + "\u001b[0m\u001b[2m => => # , typeguard, highdicom, monai \n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.3s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 4.9s\n", - "\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: typeguard, pydicom, pillow-jpls, monai,\n", - "\u001b[0m\u001b[2m => => # highdicom \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.7s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[2m => => # Installing collected packages: typing-extensions, pydicom, pillow-jpls\n", + "\u001b[0m\u001b[2m => => # , typeguard, highdicom, monai \n", + "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.5s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 5.1s\n", - "\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: typeguard, pydicom, pillow-jpls, monai,\n", - "\u001b[0m\u001b[2m => => # highdicom \n", - "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.9s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 5.0s\n", + "\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[2m => => # Installing collected packages: typing-extensions, pydicom, pillow-jpls\n", + "\u001b[0m\u001b[2m => => # , typeguard, highdicom, monai \n", + "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.6s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 5.2s\n", - "\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: typeguard, pydicom, pillow-jpls, monai,\n", - "\u001b[0m\u001b[2m => => # highdicom \n", - "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.0s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[2m => => # Installing collected packages: typing-extensions, pydicom, pillow-jpls\n", + "\u001b[0m\u001b[2m => => # , typeguard, highdicom, monai \n", + "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.8s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 5.4s\n", - "\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: typeguard, pydicom, pillow-jpls, monai,\n", - "\u001b[0m\u001b[2m => => # highdicom \n", - "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.2s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 5.3s\n", + "\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[2m => => # Installing collected packages: typing-extensions, pydicom, pillow-jpls\n", + "\u001b[0m\u001b[2m => => # , typeguard, highdicom, monai \n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.9s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 5.5s\n", - "\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: typeguard, pydicom, pillow-jpls, monai,\n", - "\u001b[0m\u001b[2m => => # highdicom \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.4s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[2m => => # Installing collected packages: typing-extensions, pydicom, pillow-jpls\n", + "\u001b[0m\u001b[2m => => # , typeguard, highdicom, monai \n", + "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.1s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 5.7s\n", - "\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: typeguard, pydicom, pillow-jpls, monai,\n", - "\u001b[0m\u001b[2m => => # highdicom \n", - "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.5s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 5.6s\n", + "\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[2m => => # Installing collected packages: typing-extensions, pydicom, pillow-jpls\n", + "\u001b[0m\u001b[2m => => # , typeguard, highdicom, monai \n", + "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.2s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 5.8s\n", - "\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: typeguard, pydicom, pillow-jpls, monai,\n", - "\u001b[0m\u001b[2m => => # highdicom \n", - "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.7s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[2m => => # Installing collected packages: typing-extensions, pydicom, pillow-jpls\n", + "\u001b[0m\u001b[2m => => # , typeguard, highdicom, monai \n", + "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.4s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 6.0s\n", - "\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: typeguard, pydicom, pillow-jpls, monai,\n", - "\u001b[0m\u001b[2m => => # highdicom \n", - "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.8s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 5.9s\n", + "\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[2m => => # Installing collected packages: typing-extensions, pydicom, pillow-jpls\n", + "\u001b[0m\u001b[2m => => # , typeguard, highdicom, monai \n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.5s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 6.1s\n", - "\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: typeguard, pydicom, pillow-jpls, monai,\n", - "\u001b[0m\u001b[2m => => # highdicom \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.0s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[2m => => # Installing collected packages: typing-extensions, pydicom, pillow-jpls\n", + "\u001b[0m\u001b[2m => => # , typeguard, highdicom, monai \n", + "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.7s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 6.3s\n", - "\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: typeguard, pydicom, pillow-jpls, monai,\n", - "\u001b[0m\u001b[2m => => # highdicom \n", - "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.1s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 6.2s\n", + "\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[2m => => # Installing collected packages: typing-extensions, pydicom, pillow-jpls\n", + "\u001b[0m\u001b[2m => => # , typeguard, highdicom, monai \n", + "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.8s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 6.4s\n", - "\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: typeguard, pydicom, pillow-jpls, monai,\n", - "\u001b[0m\u001b[2m => => # highdicom \n", - "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.3s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[2m => => # Installing collected packages: typing-extensions, pydicom, pillow-jpls\n", + "\u001b[0m\u001b[2m => => # , typeguard, highdicom, monai \n", + "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.0s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", + "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", + "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 6.5s\n", + "\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[2m => => # Installing collected packages: typing-extensions, pydicom, pillow-jpls\n", + "\u001b[0m\u001b[2m => => # , typeguard, highdicom, monai \n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.1s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", + "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", + "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 6.7s\n", + "\u001b[2m => => # Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) \n", + "\u001b[0m\u001b[2m => => # Requirement already satisfied: zipp>=0.5 in /opt/conda/lib/python3.8/s\n", + "\u001b[0m\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[2m => => # Installing collected packages: typing-extensions, pydicom, pillow-jpls\n", + "\u001b[0m\u001b[2m => => # , typeguard, highdicom, monai \n", + "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.3s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 6.6s\n", - "\u001b[2m => => # ) (1.13.0a0+d321be6) \n", - "\u001b[0m\u001b[2m => => # Requirement already satisfied: typing_extensions in /opt/conda/lib/pyt\n", - "\u001b[0m\u001b[2m => => # hon3.8/site-packages (from torch>=1.9->monai->-r /opt/monai/app/requir\n", - "\u001b[0m\u001b[2m => => # ements.txt (line 5)) (4.3.0) \n", - "\u001b[0m\u001b[2m => => # Installing collected packages: typeguard, pydicom, pillow-jpls, monai,\n", - "\u001b[0m\u001b[2m => => # highdicom \n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 6.8s\n", + "\u001b[2m => => # ite-packages (from importlib-metadata>=3.6->typeguard>=3.0.0->-r /opt/\n", + "\u001b[0m\u001b[2m => => # monai/app/requirements.txt (line 8)) (3.8.1) \n", + "\u001b[0m\u001b[2m => => # Installing collected packages: typing-extensions, pydicom, pillow-jpls\n", + "\u001b[0m\u001b[2m => => # , typeguard, highdicom, monai \n", + "\u001b[0m\u001b[2m => => # Successfully installed highdicom-0.21.1 monai-1.2.0 pillow-jpls-1.2.0 \n", + "\u001b[0m\u001b[2m => => # pydicom-2.4.1 typeguard-4.0.0 typing-extensions-4.7.1 \n", "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.4s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 6.7s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 6.9s\n", "\u001b[2m => => # Successfully installed highdicom-0.21.1 monai-1.2.0 pillow-jpls-1.2.0 \n", - "\u001b[0m\u001b[2m => => # pydicom-2.4.1 typeguard-2.12.1 \n", + "\u001b[0m\u001b[2m => => # pydicom-2.4.1 typeguard-4.0.0 typing-extensions-4.7.1 \n", "\u001b[0m\u001b[2m => => # WARNING: Running pip as the 'root' user can result in broken permissio\n", "\u001b[0m\u001b[2m => => # ns and conflicting behaviour with the system package manager. It is re\n", "\u001b[0m\u001b[2m => => # commended to use a virtual environment instead: https://pip.pypa.io/wa\n", "\u001b[0m\u001b[2m => => # rnings/venv \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.5s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.6s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", + "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", + "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.1s\n", + "\u001b[2m => => # Successfully installed highdicom-0.21.1 monai-1.2.0 pillow-jpls-1.2.0 \n", + "\u001b[0m\u001b[2m => => # pydicom-2.4.1 typeguard-4.0.0 typing-extensions-4.7.1 \n", + "\u001b[0m\u001b[2m => => # WARNING: Running pip as the 'root' user can result in broken permissio\n", + "\u001b[0m\u001b[2m => => # ns and conflicting behaviour with the system package manager. It is re\n", + "\u001b[0m\u001b[2m => => # commended to use a virtual environment instead: https://pip.pypa.io/wa\n", + "\u001b[0m\u001b[2m => => # rnings/venv \n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.7s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 6.8s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.2s\n", "\u001b[2m => => # WARNING: Running pip as the 'root' user can result in broken permissio\n", "\u001b[0m\u001b[2m => => # ns and conflicting behaviour with the system package manager. It is re\n", "\u001b[0m\u001b[2m => => # commended to use a virtual environment instead: https://pip.pypa.io/wa\n", "\u001b[0m\u001b[2m => => # rnings/venv \n", "\u001b[0m\u001b[2m => => # [notice] A new release of pip available: 22.3 -> 23.1.2 \n", "\u001b[0m\u001b[2m => => # [notice] To update, run: pip install --upgrade pip \n", - "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.7s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.8s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.0s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.4s\n", "\u001b[2m => => # WARNING: Running pip as the 'root' user can result in broken permissio\n", "\u001b[0m\u001b[2m => => # ns and conflicting behaviour with the system package manager. It is re\n", "\u001b[0m\u001b[2m => => # commended to use a virtual environment instead: https://pip.pypa.io/wa\n", "\u001b[0m\u001b[2m => => # rnings/venv \n", "\u001b[0m\u001b[2m => => # [notice] A new release of pip available: 22.3 -> 23.1.2 \n", "\u001b[0m\u001b[2m => => # [notice] To update, run: pip install --upgrade pip \n", - "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.8s (12/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.0s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.1s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.5s\n", "\u001b[2m => => # WARNING: Running pip as the 'root' user can result in broken permissio\n", "\u001b[0m\u001b[2m => => # ns and conflicting behaviour with the system package manager. It is re\n", "\u001b[0m\u001b[2m => => # commended to use a virtual environment instead: https://pip.pypa.io/wa\n", "\u001b[0m\u001b[2m => => # rnings/venv \n", "\u001b[0m\u001b[2m => => # [notice] A new release of pip available: 22.3 -> 23.1.2 \n", "\u001b[0m\u001b[2m => => # [notice] To update, run: pip install --upgrade pip \n", - "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.0s (14/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.1s (14/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.2s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.5s\n", "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", "\u001b[0m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.1s\n", " \n", " \n", " \n", " \n", - "\u001b[4A\u001b[0G\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.1s (14/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[4A\u001b[0G\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.3s (14/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.2s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.5s\n", "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", "\u001b[0m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.2s\n", - "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.3s (14/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.4s (14/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.2s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.5s\n", "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", "\u001b[0m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.4s\n", - "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.4s (14/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.6s (14/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.2s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.5s\n", "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", "\u001b[0m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", "\u001b[2m => => # User site package location: /root/.local/lib/python3.8/site-packages \n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.5s (17/19) \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.7s (17/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.2s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.5s\n", "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.0s\n", "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.0s\n", - "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.7s (19/20) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m => [14/15] COPY ./app /opt/monai/app 0.0s\n", + "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.8s (19/20) \n", + "\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.2s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.5s\n", "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.0s\n", @@ -2344,21 +2385,21 @@ "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.0s\n", "\u001b[0m => exporting to image 0.1s\n", " => => exporting layers 0.1s\n", - "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.8s (19/20) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 10.0s (19/20) \n", + "\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.2s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.5s\n", "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.0s\n", @@ -2367,21 +2408,21 @@ "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.0s\n", "\u001b[0m => exporting to image 0.2s\n", " => => exporting layers 0.2s\n", - "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 10.0s (19/20) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 10.1s (19/20) \n", + "\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.2s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.5s\n", "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.0s\n", @@ -2390,21 +2431,21 @@ "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.0s\n", "\u001b[0m => exporting to image 0.4s\n", " => => exporting layers 0.4s\n", - "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 10.1s (19/20) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 10.3s (19/20) \n", + "\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.2s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.5s\n", "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.0s\n", @@ -2413,46 +2454,23 @@ "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.0s\n", "\u001b[0m => exporting to image 0.5s\n", " => => exporting layers 0.5s\n", - "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 10.2s (20/20) \n", - "\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", - "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", - "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.2s\n", - "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", - "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", - "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.0s\n", - "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => exporting to image 0.6s\n", - "\u001b[0m\u001b[34m => => exporting layers 0.6s\n", - "\u001b[0m\u001b[34m => => writing image sha256:23edc5d7dc76081a452428b899e984138f04c35e90644 0.0s\n", - "\u001b[0m\u001b[34m => => naming to docker.io/library/mednist_app:latest 0.0s\n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 10.3s (20/20) FINISHED \n", - "\u001b[34m => [internal] load .dockerignore 0.1s\n", - "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 10.4s (20/20) FINISHED \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", "\u001b[0m\u001b[34m => => transferring context: 29.08MB 0.2s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", "\u001b[0m\u001b[34m => [ 6/15] COPY ./models /opt/monai/models 0.2s\n", "\u001b[0m\u001b[34m => [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirements.txt 0.0s\n", - "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 1.0s\n", - "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.2s\n", + "\u001b[0m\u001b[34m => [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.deploy.ex 0.9s\n", + "\u001b[0m\u001b[34m => [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/app/requi 7.5s\n", "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.0s\n", @@ -2461,10 +2479,10 @@ "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.0s\n", "\u001b[0m\u001b[34m => exporting to image 0.6s\n", "\u001b[0m\u001b[34m => => exporting layers 0.6s\n", - "\u001b[0m\u001b[34m => => writing image sha256:23edc5d7dc76081a452428b899e984138f04c35e90644 0.0s\n", + "\u001b[0m\u001b[34m => => writing image sha256:1eba359ad2aef41161eb2253c8ddaf172acc72bc3eaa5 0.0s\n", "\u001b[0m\u001b[34m => => naming to docker.io/library/mednist_app:latest 0.0s\n", "\u001b[0m\u001b[?25Done\n", - "[2023-07-07 11:37:28,194] [INFO] (app_packager) - Successfully built mednist_app:latest\n" + "[2023-07-11 12:29:09,060] [INFO] (app_packager) - Successfully built mednist_app:latest\n" ] } ], @@ -2493,7 +2511,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "mednist_app latest 23edc5d7dc76 3 seconds ago 15GB\n" + "mednist_app latest 1eba359ad2ae 3 seconds ago 15GB\n" ] } ], @@ -2519,7 +2537,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "Test Input Path: /tmp/tmpxonk2ze8/MedNIST/AbdomenCT/001420.jpeg\n", + "Test Input Path: /tmp/tmp00iaib5g/MedNIST/AbdomenCT/001420.jpeg\n", "MAP input folder files:\n", "001420.jpeg\n", "Checking dependencies...\n", @@ -2531,18 +2549,18 @@ "\"mednist_app:latest\" found.\n", "\n", "Reading MONAI App Package manifest...\n", - "\u001b[sPreparing to copy...\u001b[?25l\u001b[u\u001b[2KCopying from container - 0B\u001b[?25h\u001b[u\u001b[2KSuccessfully copied 2.05kB to /tmp/tmpb_q9cfo9/app.json\n", - "\u001b[sPreparing to copy...\u001b[?25l\u001b[u\u001b[2KCopying from container - 0B\u001b[?25h\u001b[u\u001b[2KSuccessfully copied 2.05kB to /tmp/tmpb_q9cfo9/pkg.json\n", + "\u001b[sPreparing to copy...\u001b[?25l\u001b[u\u001b[2KCopying from container - 0B\u001b[?25h\u001b[u\u001b[2KSuccessfully copied 2.05kB to /tmp/tmp0_zu2d_p/app.json\n", + "\u001b[sPreparing to copy...\u001b[?25l\u001b[u\u001b[2KCopying from container - 0B\u001b[?25h\u001b[u\u001b[2KSuccessfully copied 2.05kB to /tmp/tmp0_zu2d_p/pkg.json\n", "--> Verifying if \"nvidia-docker\" is installed...\n", "\n", "/opt/conda/lib/python3.8/site-packages/scipy/__init__.py:138: UserWarning: A NumPy version >=1.16.5 and <1.23.0 is required for this version of SciPy (detected version 1.24.3)\n", " warnings.warn(f\"A NumPy version >={np_minversion} and <{np_maxversion} is required for this version of \"\n", "\u001b[34mGoing to initiate execution of operator LoadPILOperator\u001b[39m\n", - "\u001b[32mExecuting operator LoadPILOperator \u001b[33m(Process ID: 1, Operator ID: 6ed53fa6-8fe1-4699-8cdd-2650bf4211c8)\u001b[39m\n", + "\u001b[32mExecuting operator LoadPILOperator \u001b[33m(Process ID: 1, Operator ID: ffdb9a34-3aab-42c7-b850-1e807d4abc42)\u001b[39m\n", "\u001b[34mDone performing execution of operator LoadPILOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator MedNISTClassifierOperator\u001b[39m\n", - "\u001b[32mExecuting operator MedNISTClassifierOperator \u001b[33m(Process ID: 1, Operator ID: 563f8d59-9217-4744-ab86-48f95491f3f9)\u001b[39m\n", + "\u001b[32mExecuting operator MedNISTClassifierOperator \u001b[33m(Process ID: 1, Operator ID: 0ed76555-578f-4b9e-8d41-4629eca56630)\u001b[39m\n", "/root/.local/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:111: FutureWarning: : Class `AddChannel` has been deprecated since version 0.8. It will be removed in version 1.3. please use MetaTensor data type and monai.transforms.EnsureChannelFirst instead with `channel_dim='no_channel'`.\n", " warn_deprecated(obj, msg, warning_category)\n", "AbdomenCT\n", diff --git a/notebooks/tutorials/03_segmentation_app.ipynb b/notebooks/tutorials/03_segmentation_app.ipynb index 76e1f38c..9028141b 100644 --- a/notebooks/tutorials/03_segmentation_app.ipynb +++ b/notebooks/tutorials/03_segmentation_app.ipynb @@ -104,7 +104,6 @@ "!python -c \"import pydicom\" || pip install -q \"pydicom>=1.4.2\"\n", "!python -c \"import highdicom\" || pip install -q \"highdicom>=0.18.2\"\n", "!python -c \"import SimpleITK\" || pip install -q \"SimpleITK>=2.0.0\"\n", - "!python -c \"import typeguard\" || pip install -q \"typeguard~=2.12.1\"\n", "\n", "# Install MONAI Deploy App SDK package\n", "!python -c \"import monai.deploy\" || pip install --upgrade -q \"monai-deploy-app-sdk\"" @@ -140,16 +139,16 @@ "Requirement already satisfied: tqdm in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from gdown) (4.65.0)\n", "Requirement already satisfied: beautifulsoup4 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from gdown) (4.12.2)\n", "Requirement already satisfied: soupsieve>1.2 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from beautifulsoup4->gdown) (2.4.1)\n", - "Requirement already satisfied: charset-normalizer<4,>=2 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (3.1.0)\n", + "Requirement already satisfied: charset-normalizer<4,>=2 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (3.2.0)\n", "Requirement already satisfied: idna<4,>=2.5 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (3.4)\n", "Requirement already satisfied: urllib3<3,>=1.21.1 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (2.0.3)\n", "Requirement already satisfied: certifi>=2017.4.17 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (2023.5.7)\n", "Requirement already satisfied: PySocks!=1.5.7,>=1.5.6 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (1.7.1)\n", "Downloading...\n", "From (uriginal): https://drive.google.com/uc?id=1Uds8mEvdGNYUuvFpTtCQ8gNU97bAPCaQ\n", - "From (redirected): https://drive.google.com/uc?id=1Uds8mEvdGNYUuvFpTtCQ8gNU97bAPCaQ&confirm=t&uuid=3c06da0e-af15-4ea2-b9bc-cb107ba77433\n", + "From (redirected): https://drive.google.com/uc?id=1Uds8mEvdGNYUuvFpTtCQ8gNU97bAPCaQ&confirm=t&uuid=acc94cb9-5b71-4f4c-8148-50021b56a2b2\n", "To: /home/mqin/src/monai-deploy-app-sdk/notebooks/tutorials/ai_spleen_seg_bundle_data.zip\n", - "100%|██████████████████████████████████████| 79.4M/79.4M [00:00<00:00, 86.6MB/s]\n", + "100%|██████████████████████████████████████| 79.4M/79.4M [00:01<00:00, 46.0MB/s]\n", "Archive: ai_spleen_seg_bundle_data.zip\n", " inflating: dcm/1-001.dcm \n", " inflating: dcm/1-002.dcm \n", @@ -666,29 +665,29 @@ "output_type": "stream", "text": [ "\u001b[34mGoing to initiate execution of operator DICOMDataLoaderOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 209509, Operator ID: 59934224-05d1-4153-9311-5c7f01cfc66e)\u001b[39m\n" + "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 411090, Operator ID: e3b86e86-9f94-4ef1-bf1f-ba8506f3835d)\u001b[39m\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "[2023-07-07 13:42:54,871] [INFO] (root) - Finding series for Selection named: CT Series\n", - "[2023-07-07 13:42:54,872] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", + "[2023-07-11 14:43:41,365] [INFO] (root) - Finding series for Selection named: CT Series\n", + "[2023-07-11 14:43:41,365] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", " # of series: 1\n", - "[2023-07-07 13:42:54,873] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", - "[2023-07-07 13:42:54,873] [INFO] (root) - On attribute: 'StudyDescription' to match value: '(.*?)'\n", - "[2023-07-07 13:42:54,874] [INFO] (root) - Series attribute StudyDescription value: CT ABDOMEN W IV CONTRAST\n", - "[2023-07-07 13:42:54,875] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 13:42:54,876] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", - "[2023-07-07 13:42:54,876] [INFO] (root) - Series attribute Modality value: CT\n", - "[2023-07-07 13:42:54,877] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 13:42:54,878] [INFO] (root) - On attribute: 'SeriesDescription' to match value: '(.*?)'\n", - "[2023-07-07 13:42:54,878] [INFO] (root) - Series attribute SeriesDescription value: ABD/PANC 3.0 B31f\n", - "[2023-07-07 13:42:54,879] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 13:42:54,879] [INFO] (root) - On attribute: 'ImageType' to match value: '['PRIMARY', 'ORIGINAL']'\n", - "[2023-07-07 13:42:54,880] [INFO] (root) - Series attribute ImageType value: None\n", - "[2023-07-07 13:42:54,881] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n" + "[2023-07-11 14:43:41,366] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "[2023-07-11 14:43:41,367] [INFO] (root) - On attribute: 'StudyDescription' to match value: '(.*?)'\n", + "[2023-07-11 14:43:41,367] [INFO] (root) - Series attribute StudyDescription value: CT ABDOMEN W IV CONTRAST\n", + "[2023-07-11 14:43:41,368] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 14:43:41,369] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", + "[2023-07-11 14:43:41,369] [INFO] (root) - Series attribute Modality value: CT\n", + "[2023-07-11 14:43:41,370] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 14:43:41,370] [INFO] (root) - On attribute: 'SeriesDescription' to match value: '(.*?)'\n", + "[2023-07-11 14:43:41,371] [INFO] (root) - Series attribute SeriesDescription value: ABD/PANC 3.0 B31f\n", + "[2023-07-11 14:43:41,371] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 14:43:41,372] [INFO] (root) - On attribute: 'ImageType' to match value: ['PRIMARY', 'ORIGINAL']\n", + "[2023-07-11 14:43:41,373] [INFO] (root) - Series attribute ImageType value: None\n", + "[2023-07-11 14:43:41,373] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n" ] }, { @@ -698,15 +697,15 @@ "\u001b[34mDone performing execution of operator DICOMDataLoaderOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesSelectorOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 209509, Operator ID: 75fd09e0-5582-47b1-98c0-0d3a6281edb8)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 411090, Operator ID: 8f7cf878-8975-46f6-9428-a48da67f76d0)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMSeriesSelectorOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesToVolumeOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 209509, Operator ID: 22592d16-7025-4c96-86cf-54a5145c0141)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 411090, Operator ID: 31fd2f9c-e161-4600-9c0d-1148dae474dd)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMSeriesToVolumeOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator SpleenSegOperator\u001b[39m\n", - "\u001b[32mExecuting operator SpleenSegOperator \u001b[33m(Process ID: 209509, Operator ID: f039fe14-95cb-48e0-9fca-8eafeba59fb3)\u001b[39m\n", + "\u001b[32mExecuting operator SpleenSegOperator \u001b[33m(Process ID: 411090, Operator ID: dba9a5f1-7017-43fc-b55b-f5b31af9bcea)\u001b[39m\n", "Converted Image object metadata:\n", "SeriesInstanceUID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239, type \n", "SeriesDate: 20090831, type \n", @@ -752,14 +751,14 @@ "name": "stdout", "output_type": "stream", "text": [ - "2023-07-07 13:43:01,678 INFO image_writer.py:197 - writing: /home/mqin/src/monai-deploy-app-sdk/notebooks/tutorials/output/prediction_output/1.3.6.1.4.1.14519.5.2.1.7085.2626/1.3.6.1.4.1.14519.5.2.1.7085.2626_seg.nii.gz\n", + "2023-07-11 14:43:48,110 INFO image_writer.py:197 - writing: /home/mqin/src/monai-deploy-app-sdk/notebooks/tutorials/output/prediction_output/1.3.6.1.4.1.14519.5.2.1.7085.2626/1.3.6.1.4.1.14519.5.2.1.7085.2626_seg.nii.gz\n", "Output Seg image numpy array shaped: (204, 512, 512)\n", "Output Seg image pixel max value: 1\n", "Output Seg image pixel min value: 0\n", "\u001b[34mDone performing execution of operator SpleenSegOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSegmentationWriterOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 209509, Operator ID: fe469b51-5a55-471d-8432-7fc635d10197)\u001b[39m\n" + "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 411090, Operator ID: 6102deaa-bfb9-4075-a3ce-49ed532c4be5)\u001b[39m\n" ] }, { @@ -768,108 +767,108 @@ "text": [ "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/highdicom/valuerep.py:54: UserWarning: The string \"C3N-00198\" is unlikely to represent the intended person name since it contains only a single component. Construct a person name according to the format in described in http://dicom.nema.org/dicom/2013/output/chtml/part05/sect_6.2.html#sect_6.2.1.2, or, in pydicom 2.2.0 or later, use the pydicom.valuerep.PersonName.from_named_components() method to construct the person name correctly. If a single-component name is really intended, add a trailing caret character to disambiguate the name.\n", " warnings.warn(\n", - "[2023-07-07 13:43:05,724] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", + "[2023-07-11 14:43:52,338] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR UL.\n", " warnings.warn(msg)\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR US.\n", " warnings.warn(msg)\n", - "[2023-07-07 13:43:05,729] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", - "[2023-07-07 13:43:05,730] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", - "[2023-07-07 13:43:05,731] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", - "[2023-07-07 13:43:05,733] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", - "[2023-07-07 13:43:05,734] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", - "[2023-07-07 13:43:05,735] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", - "[2023-07-07 13:43:05,736] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", - "[2023-07-07 13:43:05,737] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", - "[2023-07-07 13:43:05,740] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", - "[2023-07-07 13:43:05,741] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", - "[2023-07-07 13:43:05,742] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", - "[2023-07-07 13:43:05,744] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", - "[2023-07-07 13:43:05,745] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", - "[2023-07-07 13:43:05,746] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", - "[2023-07-07 13:43:05,748] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", - "[2023-07-07 13:43:05,749] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", - "[2023-07-07 13:43:05,750] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", - "[2023-07-07 13:43:05,752] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", - "[2023-07-07 13:43:05,753] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", - "[2023-07-07 13:43:05,754] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", - "[2023-07-07 13:43:05,755] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", - "[2023-07-07 13:43:05,756] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", - "[2023-07-07 13:43:05,757] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", - "[2023-07-07 13:43:05,759] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", - "[2023-07-07 13:43:05,760] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", - "[2023-07-07 13:43:05,761] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", - "[2023-07-07 13:43:05,762] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", - "[2023-07-07 13:43:05,764] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", - "[2023-07-07 13:43:05,765] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", - "[2023-07-07 13:43:05,766] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", - "[2023-07-07 13:43:05,767] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", - "[2023-07-07 13:43:05,768] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", - "[2023-07-07 13:43:05,770] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", - "[2023-07-07 13:43:05,771] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", - "[2023-07-07 13:43:05,772] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", - "[2023-07-07 13:43:05,773] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", - "[2023-07-07 13:43:05,774] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", - "[2023-07-07 13:43:05,776] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", - "[2023-07-07 13:43:05,777] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", - "[2023-07-07 13:43:05,778] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", - "[2023-07-07 13:43:05,779] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", - "[2023-07-07 13:43:05,781] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", - "[2023-07-07 13:43:05,782] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", - "[2023-07-07 13:43:05,783] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", - "[2023-07-07 13:43:05,784] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", - "[2023-07-07 13:43:05,786] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", - "[2023-07-07 13:43:05,787] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", - "[2023-07-07 13:43:05,788] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", - "[2023-07-07 13:43:05,790] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", - "[2023-07-07 13:43:05,791] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", - "[2023-07-07 13:43:05,792] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", - "[2023-07-07 13:43:05,794] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", - "[2023-07-07 13:43:05,795] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", - "[2023-07-07 13:43:05,797] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", - "[2023-07-07 13:43:05,798] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", - "[2023-07-07 13:43:05,800] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", - "[2023-07-07 13:43:05,801] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", - "[2023-07-07 13:43:05,802] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", - "[2023-07-07 13:43:05,804] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", - "[2023-07-07 13:43:05,805] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", - "[2023-07-07 13:43:05,806] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", - "[2023-07-07 13:43:05,808] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", - "[2023-07-07 13:43:05,809] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", - "[2023-07-07 13:43:05,811] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", - "[2023-07-07 13:43:05,812] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", - "[2023-07-07 13:43:05,814] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", - "[2023-07-07 13:43:05,816] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", - "[2023-07-07 13:43:05,817] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", - "[2023-07-07 13:43:05,819] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", - "[2023-07-07 13:43:05,820] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", - "[2023-07-07 13:43:05,822] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", - "[2023-07-07 13:43:05,823] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", - "[2023-07-07 13:43:05,825] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", - "[2023-07-07 13:43:05,828] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", - "[2023-07-07 13:43:05,829] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", - "[2023-07-07 13:43:05,831] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", - "[2023-07-07 13:43:05,832] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", - "[2023-07-07 13:43:05,834] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", - "[2023-07-07 13:43:05,836] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", - "[2023-07-07 13:43:05,837] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", - "[2023-07-07 13:43:05,839] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", - "[2023-07-07 13:43:05,840] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", - "[2023-07-07 13:43:05,842] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", - "[2023-07-07 13:43:05,844] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", - "[2023-07-07 13:43:05,845] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", - "[2023-07-07 13:43:05,847] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", - "[2023-07-07 13:43:05,849] [INFO] (highdicom.seg.sop) - add plane #87 for segment #1\n", - "[2023-07-07 13:43:05,850] [INFO] (highdicom.seg.sop) - add plane #88 for segment #1\n", - "[2023-07-07 13:43:05,942] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 13:43:05,943] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", - "[2023-07-07 13:43:05,944] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 13:43:05,945] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", - "[2023-07-07 13:43:05,946] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", - "[2023-07-07 13:43:05,946] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 13:43:05,947] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", - "[2023-07-07 13:43:05,948] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", - "[2023-07-07 13:43:05,948] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n" + "[2023-07-11 14:43:52,340] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", + "[2023-07-11 14:43:52,342] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", + "[2023-07-11 14:43:52,343] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", + "[2023-07-11 14:43:52,344] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", + "[2023-07-11 14:43:52,345] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", + "[2023-07-11 14:43:52,347] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", + "[2023-07-11 14:43:52,348] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", + "[2023-07-11 14:43:52,349] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", + "[2023-07-11 14:43:52,350] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", + "[2023-07-11 14:43:52,351] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", + "[2023-07-11 14:43:52,353] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", + "[2023-07-11 14:43:52,354] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", + "[2023-07-11 14:43:52,355] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", + "[2023-07-11 14:43:52,356] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", + "[2023-07-11 14:43:52,357] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", + "[2023-07-11 14:43:52,359] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", + "[2023-07-11 14:43:52,360] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", + "[2023-07-11 14:43:52,361] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", + "[2023-07-11 14:43:52,362] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", + "[2023-07-11 14:43:52,363] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", + "[2023-07-11 14:43:52,365] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", + "[2023-07-11 14:43:52,366] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", + "[2023-07-11 14:43:52,367] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", + "[2023-07-11 14:43:52,368] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", + "[2023-07-11 14:43:52,369] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", + "[2023-07-11 14:43:52,371] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", + "[2023-07-11 14:43:52,372] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", + "[2023-07-11 14:43:52,373] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", + "[2023-07-11 14:43:52,374] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", + "[2023-07-11 14:43:52,376] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", + "[2023-07-11 14:43:52,377] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", + "[2023-07-11 14:43:52,378] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", + "[2023-07-11 14:43:52,379] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", + "[2023-07-11 14:43:52,381] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", + "[2023-07-11 14:43:52,382] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", + "[2023-07-11 14:43:52,383] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", + "[2023-07-11 14:43:52,385] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", + "[2023-07-11 14:43:52,386] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", + "[2023-07-11 14:43:52,387] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", + "[2023-07-11 14:43:52,388] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", + "[2023-07-11 14:43:52,390] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", + "[2023-07-11 14:43:52,394] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", + "[2023-07-11 14:43:52,403] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", + "[2023-07-11 14:43:52,406] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", + "[2023-07-11 14:43:52,408] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", + "[2023-07-11 14:43:52,411] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", + "[2023-07-11 14:43:52,413] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", + "[2023-07-11 14:43:52,416] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", + "[2023-07-11 14:43:52,419] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", + "[2023-07-11 14:43:52,421] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", + "[2023-07-11 14:43:52,423] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", + "[2023-07-11 14:43:52,425] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", + "[2023-07-11 14:43:52,428] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", + "[2023-07-11 14:43:52,430] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", + "[2023-07-11 14:43:52,432] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", + "[2023-07-11 14:43:52,434] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", + "[2023-07-11 14:43:52,436] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", + "[2023-07-11 14:43:52,438] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", + "[2023-07-11 14:43:52,440] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", + "[2023-07-11 14:43:52,442] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", + "[2023-07-11 14:43:52,444] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", + "[2023-07-11 14:43:52,447] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", + "[2023-07-11 14:43:52,449] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", + "[2023-07-11 14:43:52,451] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", + "[2023-07-11 14:43:52,453] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", + "[2023-07-11 14:43:52,455] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", + "[2023-07-11 14:43:52,457] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", + "[2023-07-11 14:43:52,459] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", + "[2023-07-11 14:43:52,461] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", + "[2023-07-11 14:43:52,463] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", + "[2023-07-11 14:43:52,465] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", + "[2023-07-11 14:43:52,467] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", + "[2023-07-11 14:43:52,469] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", + "[2023-07-11 14:43:52,471] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", + "[2023-07-11 14:43:52,473] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", + "[2023-07-11 14:43:52,475] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", + "[2023-07-11 14:43:52,477] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", + "[2023-07-11 14:43:52,479] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", + "[2023-07-11 14:43:52,481] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", + "[2023-07-11 14:43:52,483] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", + "[2023-07-11 14:43:52,484] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", + "[2023-07-11 14:43:52,487] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", + "[2023-07-11 14:43:52,489] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", + "[2023-07-11 14:43:52,491] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", + "[2023-07-11 14:43:52,493] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", + "[2023-07-11 14:43:52,496] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", + "[2023-07-11 14:43:52,497] [INFO] (highdicom.seg.sop) - add plane #87 for segment #1\n", + "[2023-07-11 14:43:52,499] [INFO] (highdicom.seg.sop) - add plane #88 for segment #1\n", + "[2023-07-11 14:43:52,559] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 14:43:52,560] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", + "[2023-07-11 14:43:52,561] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 14:43:52,562] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", + "[2023-07-11 14:43:52,563] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", + "[2023-07-11 14:43:52,564] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 14:43:52,564] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", + "[2023-07-11 14:43:52,565] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", + "[2023-07-11 14:43:52,566] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n" ] }, { @@ -1255,35 +1254,35 @@ "output_type": "stream", "text": [ "\u001b[34mGoing to initiate execution of operator DICOMDataLoaderOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 209816, Operator ID: 93ce0c0a-795a-4c0a-b456-18279af89bb6)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 411375, Operator ID: 2dbbf9a7-2218-4484-b283-10daed825d96)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMDataLoaderOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesSelectorOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 209816, Operator ID: 764303ba-85a1-4532-b936-054d63f71b3f)\u001b[39m\n", - "[2023-07-07 13:43:12,755] [INFO] (root) - Finding series for Selection named: CT Series\n", - "[2023-07-07 13:43:12,755] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", + "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 411375, Operator ID: 392a230d-6efc-4b74-9e73-fead8907d62a)\u001b[39m\n", + "[2023-07-11 14:43:58,265] [INFO] (root) - Finding series for Selection named: CT Series\n", + "[2023-07-11 14:43:58,265] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", " # of series: 1\n", - "[2023-07-07 13:43:12,755] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", - "[2023-07-07 13:43:12,755] [INFO] (root) - On attribute: 'StudyDescription' to match value: '(.*?)'\n", - "[2023-07-07 13:43:12,755] [INFO] (root) - Series attribute StudyDescription value: CT ABDOMEN W IV CONTRAST\n", - "[2023-07-07 13:43:12,755] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 13:43:12,755] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", - "[2023-07-07 13:43:12,755] [INFO] (root) - Series attribute Modality value: CT\n", - "[2023-07-07 13:43:12,755] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 13:43:12,755] [INFO] (root) - On attribute: 'SeriesDescription' to match value: '(.*?)'\n", - "[2023-07-07 13:43:12,755] [INFO] (root) - Series attribute SeriesDescription value: ABD/PANC 3.0 B31f\n", - "[2023-07-07 13:43:12,755] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 13:43:12,755] [INFO] (root) - On attribute: 'ImageType' to match value: '['PRIMARY', 'ORIGINAL']'\n", - "[2023-07-07 13:43:12,755] [INFO] (root) - Series attribute ImageType value: None\n", - "[2023-07-07 13:43:12,755] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "[2023-07-11 14:43:58,265] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "[2023-07-11 14:43:58,265] [INFO] (root) - On attribute: 'StudyDescription' to match value: '(.*?)'\n", + "[2023-07-11 14:43:58,265] [INFO] (root) - Series attribute StudyDescription value: CT ABDOMEN W IV CONTRAST\n", + "[2023-07-11 14:43:58,265] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 14:43:58,265] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", + "[2023-07-11 14:43:58,265] [INFO] (root) - Series attribute Modality value: CT\n", + "[2023-07-11 14:43:58,265] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 14:43:58,265] [INFO] (root) - On attribute: 'SeriesDescription' to match value: '(.*?)'\n", + "[2023-07-11 14:43:58,265] [INFO] (root) - Series attribute SeriesDescription value: ABD/PANC 3.0 B31f\n", + "[2023-07-11 14:43:58,265] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 14:43:58,265] [INFO] (root) - On attribute: 'ImageType' to match value: ['PRIMARY', 'ORIGINAL']\n", + "[2023-07-11 14:43:58,265] [INFO] (root) - Series attribute ImageType value: None\n", + "[2023-07-11 14:43:58,266] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", "\u001b[34mDone performing execution of operator DICOMSeriesSelectorOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesToVolumeOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 209816, Operator ID: 57f5d4c5-2dee-440c-ba11-dc26c08ba360)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 411375, Operator ID: 14e0e3e6-280f-44ce-841e-4c2df573e3a4)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMSeriesToVolumeOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator SpleenSegOperator\u001b[39m\n", - "\u001b[32mExecuting operator SpleenSegOperator \u001b[33m(Process ID: 209816, Operator ID: 9f4fa1f1-1c5d-4ebe-8e61-d9a60965b9b0)\u001b[39m\n", + "\u001b[32mExecuting operator SpleenSegOperator \u001b[33m(Process ID: 411375, Operator ID: 2efe7071-fd74-4238-aaec-65b7dbe272a8)\u001b[39m\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:321: FutureWarning: monai.transforms.io.dictionary LoadImaged.__init__:image_only: Current default value of argument `image_only=False` has been deprecated since version 1.1. It will be changed to `image_only=True` in version 1.3.\n", " warn_deprecated(argname, msg, warning_category)\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:321: FutureWarning: monai.transforms.io.dictionary SaveImaged.__init__:resample: Current default value of argument `resample=True` has been deprecated since version 1.1. It will be changed to `resample=False` in version 1.3.\n", @@ -1317,118 +1316,118 @@ "StudyDescription: CT ABDOMEN W IV CONTRAST, type \n", "AccessionNumber: 5471978513296937, type \n", "selection_name: CT Series, type \n", - "2023-07-07 13:43:18,808 INFO image_writer.py:197 - writing: /home/mqin/src/monai-deploy-app-sdk/notebooks/tutorials/output/prediction_output/1.3.6.1.4.1.14519.5.2.1.7085.2626/1.3.6.1.4.1.14519.5.2.1.7085.2626_seg.nii.gz\n", + "2023-07-11 14:44:03,657 INFO image_writer.py:197 - writing: /home/mqin/src/monai-deploy-app-sdk/notebooks/tutorials/output/prediction_output/1.3.6.1.4.1.14519.5.2.1.7085.2626/1.3.6.1.4.1.14519.5.2.1.7085.2626_seg.nii.gz\n", "Output Seg image numpy array shaped: (204, 512, 512)\n", "Output Seg image pixel max value: 1\n", "Output Seg image pixel min value: 0\n", "\u001b[34mDone performing execution of operator SpleenSegOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSegmentationWriterOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 209816, Operator ID: 94e061b3-9d42-4ddc-827f-5c72d217072e)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 411375, Operator ID: 1cda89fb-a6b7-42aa-a280-4fbf757cc87d)\u001b[39m\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/highdicom/valuerep.py:54: UserWarning: The string \"C3N-00198\" is unlikely to represent the intended person name since it contains only a single component. Construct a person name according to the format in described in http://dicom.nema.org/dicom/2013/output/chtml/part05/sect_6.2.html#sect_6.2.1.2, or, in pydicom 2.2.0 or later, use the pydicom.valuerep.PersonName.from_named_components() method to construct the person name correctly. If a single-component name is really intended, add a trailing caret character to disambiguate the name.\n", " warnings.warn(\n", - "[2023-07-07 13:43:23,400] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", + "[2023-07-11 14:44:07,732] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR UL.\n", " warnings.warn(msg)\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR US.\n", " warnings.warn(msg)\n", - "[2023-07-07 13:43:23,402] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", - "[2023-07-07 13:43:23,402] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", - "[2023-07-07 13:43:23,403] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", - "[2023-07-07 13:43:23,403] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", - "[2023-07-07 13:43:23,404] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", - "[2023-07-07 13:43:23,405] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", - "[2023-07-07 13:43:23,405] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", - "[2023-07-07 13:43:23,406] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", - "[2023-07-07 13:43:23,406] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", - "[2023-07-07 13:43:23,407] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", - "[2023-07-07 13:43:23,408] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", - "[2023-07-07 13:43:23,408] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", - "[2023-07-07 13:43:23,409] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", - "[2023-07-07 13:43:23,409] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", - "[2023-07-07 13:43:23,410] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", - "[2023-07-07 13:43:23,410] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", - "[2023-07-07 13:43:23,411] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", - "[2023-07-07 13:43:23,412] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", - "[2023-07-07 13:43:23,412] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", - "[2023-07-07 13:43:23,413] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", - "[2023-07-07 13:43:23,413] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", - "[2023-07-07 13:43:23,414] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", - "[2023-07-07 13:43:23,415] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", - "[2023-07-07 13:43:23,415] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", - "[2023-07-07 13:43:23,416] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", - "[2023-07-07 13:43:23,416] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", - "[2023-07-07 13:43:23,417] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", - "[2023-07-07 13:43:23,417] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", - "[2023-07-07 13:43:23,418] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", - "[2023-07-07 13:43:23,419] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", - "[2023-07-07 13:43:23,419] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", - "[2023-07-07 13:43:23,420] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", - "[2023-07-07 13:43:23,421] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", - "[2023-07-07 13:43:23,421] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", - "[2023-07-07 13:43:23,422] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", - "[2023-07-07 13:43:23,423] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", - "[2023-07-07 13:43:23,423] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", - "[2023-07-07 13:43:23,424] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", - "[2023-07-07 13:43:23,424] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", - "[2023-07-07 13:43:23,425] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", - "[2023-07-07 13:43:23,425] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", - "[2023-07-07 13:43:23,426] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", - "[2023-07-07 13:43:23,427] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", - "[2023-07-07 13:43:23,427] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", - "[2023-07-07 13:43:23,428] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", - "[2023-07-07 13:43:23,428] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", - "[2023-07-07 13:43:23,429] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", - "[2023-07-07 13:43:23,429] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", - "[2023-07-07 13:43:23,430] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", - "[2023-07-07 13:43:23,431] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", - "[2023-07-07 13:43:23,431] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", - "[2023-07-07 13:43:23,432] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", - "[2023-07-07 13:43:23,432] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", - "[2023-07-07 13:43:23,433] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", - "[2023-07-07 13:43:23,434] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", - "[2023-07-07 13:43:23,434] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", - "[2023-07-07 13:43:23,435] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", - "[2023-07-07 13:43:23,436] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", - "[2023-07-07 13:43:23,436] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", - "[2023-07-07 13:43:23,437] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", - "[2023-07-07 13:43:23,437] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", - "[2023-07-07 13:43:23,438] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", - "[2023-07-07 13:43:23,439] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", - "[2023-07-07 13:43:23,439] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", - "[2023-07-07 13:43:23,440] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", - "[2023-07-07 13:43:23,440] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", - "[2023-07-07 13:43:23,441] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", - "[2023-07-07 13:43:23,442] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", - "[2023-07-07 13:43:23,442] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", - "[2023-07-07 13:43:23,443] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", - "[2023-07-07 13:43:23,443] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", - "[2023-07-07 13:43:23,444] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", - "[2023-07-07 13:43:23,444] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", - "[2023-07-07 13:43:23,445] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", - "[2023-07-07 13:43:23,446] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", - "[2023-07-07 13:43:23,446] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", - "[2023-07-07 13:43:23,447] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", - "[2023-07-07 13:43:23,447] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", - "[2023-07-07 13:43:23,448] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", - "[2023-07-07 13:43:23,449] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", - "[2023-07-07 13:43:23,449] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", - "[2023-07-07 13:43:23,450] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", - "[2023-07-07 13:43:23,450] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", - "[2023-07-07 13:43:23,451] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", - "[2023-07-07 13:43:23,451] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", - "[2023-07-07 13:43:23,452] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", - "[2023-07-07 13:43:23,453] [INFO] (highdicom.seg.sop) - add plane #87 for segment #1\n", - "[2023-07-07 13:43:23,453] [INFO] (highdicom.seg.sop) - add plane #88 for segment #1\n", - "[2023-07-07 13:43:23,515] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 13:43:23,515] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", - "[2023-07-07 13:43:23,515] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 13:43:23,515] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", - "[2023-07-07 13:43:23,515] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", - "[2023-07-07 13:43:23,515] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 13:43:23,515] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", - "[2023-07-07 13:43:23,516] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", - "[2023-07-07 13:43:23,516] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", + "[2023-07-11 14:44:07,733] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", + "[2023-07-11 14:44:07,734] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", + "[2023-07-11 14:44:07,735] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", + "[2023-07-11 14:44:07,736] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", + "[2023-07-11 14:44:07,736] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", + "[2023-07-11 14:44:07,737] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", + "[2023-07-11 14:44:07,737] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", + "[2023-07-11 14:44:07,738] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", + "[2023-07-11 14:44:07,739] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", + "[2023-07-11 14:44:07,739] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", + "[2023-07-11 14:44:07,740] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", + "[2023-07-11 14:44:07,741] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", + "[2023-07-11 14:44:07,742] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", + "[2023-07-11 14:44:07,742] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", + "[2023-07-11 14:44:07,743] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", + "[2023-07-11 14:44:07,744] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", + "[2023-07-11 14:44:07,744] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", + "[2023-07-11 14:44:07,745] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", + "[2023-07-11 14:44:07,745] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", + "[2023-07-11 14:44:07,746] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", + "[2023-07-11 14:44:07,747] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", + "[2023-07-11 14:44:07,748] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", + "[2023-07-11 14:44:07,748] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", + "[2023-07-11 14:44:07,749] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", + "[2023-07-11 14:44:07,750] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", + "[2023-07-11 14:44:07,750] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", + "[2023-07-11 14:44:07,751] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", + "[2023-07-11 14:44:07,752] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", + "[2023-07-11 14:44:07,752] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", + "[2023-07-11 14:44:07,753] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", + "[2023-07-11 14:44:07,753] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", + "[2023-07-11 14:44:07,754] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", + "[2023-07-11 14:44:07,755] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", + "[2023-07-11 14:44:07,756] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", + "[2023-07-11 14:44:07,756] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", + "[2023-07-11 14:44:07,757] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", + "[2023-07-11 14:44:07,757] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", + "[2023-07-11 14:44:07,758] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", + "[2023-07-11 14:44:07,759] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", + "[2023-07-11 14:44:07,759] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", + "[2023-07-11 14:44:07,760] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", + "[2023-07-11 14:44:07,761] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", + "[2023-07-11 14:44:07,761] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", + "[2023-07-11 14:44:07,762] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", + "[2023-07-11 14:44:07,763] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", + "[2023-07-11 14:44:07,763] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", + "[2023-07-11 14:44:07,764] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", + "[2023-07-11 14:44:07,765] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", + "[2023-07-11 14:44:07,766] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", + "[2023-07-11 14:44:07,766] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", + "[2023-07-11 14:44:07,767] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", + "[2023-07-11 14:44:07,768] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", + "[2023-07-11 14:44:07,768] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", + "[2023-07-11 14:44:07,769] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", + "[2023-07-11 14:44:07,770] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", + "[2023-07-11 14:44:07,770] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", + "[2023-07-11 14:44:07,771] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", + "[2023-07-11 14:44:07,772] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", + "[2023-07-11 14:44:07,772] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", + "[2023-07-11 14:44:07,773] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", + "[2023-07-11 14:44:07,773] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", + "[2023-07-11 14:44:07,774] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", + "[2023-07-11 14:44:07,775] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", + "[2023-07-11 14:44:07,776] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", + "[2023-07-11 14:44:07,776] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", + "[2023-07-11 14:44:07,777] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", + "[2023-07-11 14:44:07,777] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", + "[2023-07-11 14:44:07,778] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", + "[2023-07-11 14:44:07,779] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", + "[2023-07-11 14:44:07,779] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", + "[2023-07-11 14:44:07,780] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", + "[2023-07-11 14:44:07,781] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", + "[2023-07-11 14:44:07,782] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", + "[2023-07-11 14:44:07,782] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", + "[2023-07-11 14:44:07,783] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", + "[2023-07-11 14:44:07,784] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", + "[2023-07-11 14:44:07,784] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", + "[2023-07-11 14:44:07,785] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", + "[2023-07-11 14:44:07,786] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", + "[2023-07-11 14:44:07,787] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", + "[2023-07-11 14:44:07,787] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", + "[2023-07-11 14:44:07,788] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", + "[2023-07-11 14:44:07,788] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", + "[2023-07-11 14:44:07,789] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", + "[2023-07-11 14:44:07,790] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", + "[2023-07-11 14:44:07,790] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", + "[2023-07-11 14:44:07,791] [INFO] (highdicom.seg.sop) - add plane #87 for segment #1\n", + "[2023-07-11 14:44:07,792] [INFO] (highdicom.seg.sop) - add plane #88 for segment #1\n", + "[2023-07-11 14:44:07,832] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 14:44:07,832] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", + "[2023-07-11 14:44:07,832] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 14:44:07,832] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", + "[2023-07-11 14:44:07,832] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", + "[2023-07-11 14:44:07,833] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 14:44:07,833] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", + "[2023-07-11 14:44:07,833] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", + "[2023-07-11 14:44:07,833] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", "\u001b[34mDone performing execution of operator DICOMSegmentationWriterOperator\n", "\u001b[39m\n" ] @@ -1455,35 +1454,35 @@ "output_type": "stream", "text": [ "\u001b[34mGoing to initiate execution of operator DICOMDataLoaderOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 209908, Operator ID: aa1e1949-77fc-4c2d-9694-6b66a67ba398)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 411461, Operator ID: 638cc085-772b-440c-9b73-9a786bb50875)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMDataLoaderOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesSelectorOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 209908, Operator ID: eefe125d-89bd-4095-a3dd-eff982e1a451)\u001b[39m\n", - "[2023-07-07 13:43:29,961] [INFO] (root) - Finding series for Selection named: CT Series\n", - "[2023-07-07 13:43:29,962] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", + "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 411461, Operator ID: bcaa782b-e6b6-4259-b98f-e7ecf1d62c10)\u001b[39m\n", + "[2023-07-11 14:44:13,012] [INFO] (root) - Finding series for Selection named: CT Series\n", + "[2023-07-11 14:44:13,012] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", " # of series: 1\n", - "[2023-07-07 13:43:29,962] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", - "[2023-07-07 13:43:29,962] [INFO] (root) - On attribute: 'StudyDescription' to match value: '(.*?)'\n", - "[2023-07-07 13:43:29,962] [INFO] (root) - Series attribute StudyDescription value: CT ABDOMEN W IV CONTRAST\n", - "[2023-07-07 13:43:29,962] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 13:43:29,962] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", - "[2023-07-07 13:43:29,962] [INFO] (root) - Series attribute Modality value: CT\n", - "[2023-07-07 13:43:29,962] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 13:43:29,962] [INFO] (root) - On attribute: 'SeriesDescription' to match value: '(.*?)'\n", - "[2023-07-07 13:43:29,962] [INFO] (root) - Series attribute SeriesDescription value: ABD/PANC 3.0 B31f\n", - "[2023-07-07 13:43:29,962] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 13:43:29,962] [INFO] (root) - On attribute: 'ImageType' to match value: '['PRIMARY', 'ORIGINAL']'\n", - "[2023-07-07 13:43:29,962] [INFO] (root) - Series attribute ImageType value: None\n", - "[2023-07-07 13:43:29,963] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "[2023-07-11 14:44:13,012] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "[2023-07-11 14:44:13,012] [INFO] (root) - On attribute: 'StudyDescription' to match value: '(.*?)'\n", + "[2023-07-11 14:44:13,012] [INFO] (root) - Series attribute StudyDescription value: CT ABDOMEN W IV CONTRAST\n", + "[2023-07-11 14:44:13,012] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 14:44:13,012] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", + "[2023-07-11 14:44:13,012] [INFO] (root) - Series attribute Modality value: CT\n", + "[2023-07-11 14:44:13,012] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 14:44:13,013] [INFO] (root) - On attribute: 'SeriesDescription' to match value: '(.*?)'\n", + "[2023-07-11 14:44:13,013] [INFO] (root) - Series attribute SeriesDescription value: ABD/PANC 3.0 B31f\n", + "[2023-07-11 14:44:13,013] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 14:44:13,013] [INFO] (root) - On attribute: 'ImageType' to match value: ['PRIMARY', 'ORIGINAL']\n", + "[2023-07-11 14:44:13,013] [INFO] (root) - Series attribute ImageType value: None\n", + "[2023-07-11 14:44:13,013] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", "\u001b[34mDone performing execution of operator DICOMSeriesSelectorOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesToVolumeOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 209908, Operator ID: 96ae1ea3-1419-4b00-ac5b-731d0515cf27)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 411461, Operator ID: 99760221-c8f0-4176-a6b6-8228d73c36fb)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMSeriesToVolumeOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator SpleenSegOperator\u001b[39m\n", - "\u001b[32mExecuting operator SpleenSegOperator \u001b[33m(Process ID: 209908, Operator ID: 5109aeb9-ac2d-40a9-93b6-d02ab299a8e1)\u001b[39m\n", + "\u001b[32mExecuting operator SpleenSegOperator \u001b[33m(Process ID: 411461, Operator ID: bf5184b8-3e43-4c37-8bbd-aaf9d855602a)\u001b[39m\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:321: FutureWarning: monai.transforms.io.dictionary LoadImaged.__init__:image_only: Current default value of argument `image_only=False` has been deprecated since version 1.1. It will be changed to `image_only=True` in version 1.3.\n", " warn_deprecated(argname, msg, warning_category)\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:321: FutureWarning: monai.transforms.io.dictionary SaveImaged.__init__:resample: Current default value of argument `resample=True` has been deprecated since version 1.1. It will be changed to `resample=False` in version 1.3.\n", @@ -1517,118 +1516,118 @@ "StudyDescription: CT ABDOMEN W IV CONTRAST, type \n", "AccessionNumber: 5471978513296937, type \n", "selection_name: CT Series, type \n", - "2023-07-07 13:43:35,874 INFO image_writer.py:197 - writing: /home/mqin/src/monai-deploy-app-sdk/notebooks/tutorials/output/prediction_output/1.3.6.1.4.1.14519.5.2.1.7085.2626/1.3.6.1.4.1.14519.5.2.1.7085.2626_seg.nii.gz\n", + "2023-07-11 14:44:18,262 INFO image_writer.py:197 - writing: /home/mqin/src/monai-deploy-app-sdk/notebooks/tutorials/output/prediction_output/1.3.6.1.4.1.14519.5.2.1.7085.2626/1.3.6.1.4.1.14519.5.2.1.7085.2626_seg.nii.gz\n", "Output Seg image numpy array shaped: (204, 512, 512)\n", "Output Seg image pixel max value: 1\n", "Output Seg image pixel min value: 0\n", "\u001b[34mDone performing execution of operator SpleenSegOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSegmentationWriterOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 209908, Operator ID: 9e3533a4-afe8-44f6-b373-ac3e80d5d36b)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 411461, Operator ID: 6288b216-c567-41cd-9347-0a71620e29a6)\u001b[39m\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/highdicom/valuerep.py:54: UserWarning: The string \"C3N-00198\" is unlikely to represent the intended person name since it contains only a single component. Construct a person name according to the format in described in http://dicom.nema.org/dicom/2013/output/chtml/part05/sect_6.2.html#sect_6.2.1.2, or, in pydicom 2.2.0 or later, use the pydicom.valuerep.PersonName.from_named_components() method to construct the person name correctly. If a single-component name is really intended, add a trailing caret character to disambiguate the name.\n", " warnings.warn(\n", - "[2023-07-07 13:43:40,418] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", + "[2023-07-11 14:44:22,408] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR UL.\n", " warnings.warn(msg)\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR US.\n", " warnings.warn(msg)\n", - "[2023-07-07 13:43:40,419] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", - "[2023-07-07 13:43:40,420] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", - "[2023-07-07 13:43:40,421] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", - "[2023-07-07 13:43:40,421] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", - "[2023-07-07 13:43:40,422] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", - "[2023-07-07 13:43:40,423] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", - "[2023-07-07 13:43:40,423] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", - "[2023-07-07 13:43:40,424] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", - "[2023-07-07 13:43:40,424] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", - "[2023-07-07 13:43:40,425] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", - "[2023-07-07 13:43:40,426] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", - "[2023-07-07 13:43:40,426] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", - "[2023-07-07 13:43:40,427] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", - "[2023-07-07 13:43:40,427] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", - "[2023-07-07 13:43:40,428] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", - "[2023-07-07 13:43:40,428] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", - "[2023-07-07 13:43:40,429] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", - "[2023-07-07 13:43:40,429] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", - "[2023-07-07 13:43:40,430] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", - "[2023-07-07 13:43:40,431] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", - "[2023-07-07 13:43:40,431] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", - "[2023-07-07 13:43:40,432] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", - "[2023-07-07 13:43:40,432] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", - "[2023-07-07 13:43:40,433] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", - "[2023-07-07 13:43:40,433] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", - "[2023-07-07 13:43:40,434] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", - "[2023-07-07 13:43:40,435] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", - "[2023-07-07 13:43:40,435] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", - "[2023-07-07 13:43:40,436] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", - "[2023-07-07 13:43:40,436] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", - "[2023-07-07 13:43:40,437] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", - "[2023-07-07 13:43:40,438] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", - "[2023-07-07 13:43:40,438] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", - "[2023-07-07 13:43:40,439] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", - "[2023-07-07 13:43:40,439] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", - "[2023-07-07 13:43:40,440] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", - "[2023-07-07 13:43:40,440] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", - "[2023-07-07 13:43:40,441] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", - "[2023-07-07 13:43:40,442] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", - "[2023-07-07 13:43:40,442] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", - "[2023-07-07 13:43:40,443] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", - "[2023-07-07 13:43:40,443] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", - "[2023-07-07 13:43:40,444] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", - "[2023-07-07 13:43:40,444] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", - "[2023-07-07 13:43:40,445] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", - "[2023-07-07 13:43:40,446] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", - "[2023-07-07 13:43:40,446] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", - "[2023-07-07 13:43:40,447] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", - "[2023-07-07 13:43:40,447] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", - "[2023-07-07 13:43:40,448] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", - "[2023-07-07 13:43:40,449] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", - "[2023-07-07 13:43:40,449] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", - "[2023-07-07 13:43:40,450] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", - "[2023-07-07 13:43:40,450] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", - "[2023-07-07 13:43:40,451] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", - "[2023-07-07 13:43:40,451] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", - "[2023-07-07 13:43:40,452] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", - "[2023-07-07 13:43:40,453] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", - "[2023-07-07 13:43:40,453] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", - "[2023-07-07 13:43:40,454] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", - "[2023-07-07 13:43:40,454] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", - "[2023-07-07 13:43:40,455] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", - "[2023-07-07 13:43:40,456] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", - "[2023-07-07 13:43:40,456] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", - "[2023-07-07 13:43:40,457] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", - "[2023-07-07 13:43:40,457] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", - "[2023-07-07 13:43:40,458] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", - "[2023-07-07 13:43:40,458] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", - "[2023-07-07 13:43:40,459] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", - "[2023-07-07 13:43:40,460] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", - "[2023-07-07 13:43:40,460] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", - "[2023-07-07 13:43:40,461] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", - "[2023-07-07 13:43:40,462] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", - "[2023-07-07 13:43:40,462] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", - "[2023-07-07 13:43:40,463] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", - "[2023-07-07 13:43:40,463] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", - "[2023-07-07 13:43:40,464] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", - "[2023-07-07 13:43:40,465] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", - "[2023-07-07 13:43:40,465] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", - "[2023-07-07 13:43:40,466] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", - "[2023-07-07 13:43:40,466] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", - "[2023-07-07 13:43:40,467] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", - "[2023-07-07 13:43:40,467] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", - "[2023-07-07 13:43:40,468] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", - "[2023-07-07 13:43:40,469] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", - "[2023-07-07 13:43:40,469] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", - "[2023-07-07 13:43:40,470] [INFO] (highdicom.seg.sop) - add plane #87 for segment #1\n", - "[2023-07-07 13:43:40,470] [INFO] (highdicom.seg.sop) - add plane #88 for segment #1\n", - "[2023-07-07 13:43:40,562] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 13:43:40,563] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", - "[2023-07-07 13:43:40,563] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 13:43:40,563] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", - "[2023-07-07 13:43:40,563] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", - "[2023-07-07 13:43:40,563] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 13:43:40,563] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", - "[2023-07-07 13:43:40,563] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", - "[2023-07-07 13:43:40,563] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", + "[2023-07-11 14:44:22,409] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", + "[2023-07-11 14:44:22,410] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", + "[2023-07-11 14:44:22,410] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", + "[2023-07-11 14:44:22,411] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", + "[2023-07-11 14:44:22,412] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", + "[2023-07-11 14:44:22,412] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", + "[2023-07-11 14:44:22,413] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", + "[2023-07-11 14:44:22,414] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", + "[2023-07-11 14:44:22,414] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", + "[2023-07-11 14:44:22,415] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", + "[2023-07-11 14:44:22,416] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", + "[2023-07-11 14:44:22,416] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", + "[2023-07-11 14:44:22,417] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", + "[2023-07-11 14:44:22,418] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", + "[2023-07-11 14:44:22,418] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", + "[2023-07-11 14:44:22,419] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", + "[2023-07-11 14:44:22,420] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", + "[2023-07-11 14:44:22,420] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", + "[2023-07-11 14:44:22,421] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", + "[2023-07-11 14:44:22,422] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", + "[2023-07-11 14:44:22,423] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", + "[2023-07-11 14:44:22,424] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", + "[2023-07-11 14:44:22,424] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", + "[2023-07-11 14:44:22,425] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", + "[2023-07-11 14:44:22,426] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", + "[2023-07-11 14:44:22,426] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", + "[2023-07-11 14:44:22,427] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", + "[2023-07-11 14:44:22,428] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", + "[2023-07-11 14:44:22,428] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", + "[2023-07-11 14:44:22,429] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", + "[2023-07-11 14:44:22,429] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", + "[2023-07-11 14:44:22,430] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", + "[2023-07-11 14:44:22,431] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", + "[2023-07-11 14:44:22,432] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", + "[2023-07-11 14:44:22,433] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", + "[2023-07-11 14:44:22,433] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", + "[2023-07-11 14:44:22,434] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", + "[2023-07-11 14:44:22,435] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", + "[2023-07-11 14:44:22,435] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", + "[2023-07-11 14:44:22,436] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", + "[2023-07-11 14:44:22,436] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", + "[2023-07-11 14:44:22,437] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", + "[2023-07-11 14:44:22,438] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", + "[2023-07-11 14:44:22,438] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", + "[2023-07-11 14:44:22,439] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", + "[2023-07-11 14:44:22,440] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", + "[2023-07-11 14:44:22,441] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", + "[2023-07-11 14:44:22,442] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", + "[2023-07-11 14:44:22,443] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", + "[2023-07-11 14:44:22,443] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", + "[2023-07-11 14:44:22,444] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", + "[2023-07-11 14:44:22,445] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", + "[2023-07-11 14:44:22,445] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", + "[2023-07-11 14:44:22,446] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", + "[2023-07-11 14:44:22,447] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", + "[2023-07-11 14:44:22,447] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", + "[2023-07-11 14:44:22,448] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", + "[2023-07-11 14:44:22,449] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", + "[2023-07-11 14:44:22,449] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", + "[2023-07-11 14:44:22,450] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", + "[2023-07-11 14:44:22,451] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", + "[2023-07-11 14:44:22,452] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", + "[2023-07-11 14:44:22,452] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", + "[2023-07-11 14:44:22,453] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", + "[2023-07-11 14:44:22,454] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", + "[2023-07-11 14:44:22,454] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", + "[2023-07-11 14:44:22,455] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", + "[2023-07-11 14:44:22,456] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", + "[2023-07-11 14:44:22,457] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", + "[2023-07-11 14:44:22,457] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", + "[2023-07-11 14:44:22,458] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", + "[2023-07-11 14:44:22,459] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", + "[2023-07-11 14:44:22,459] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", + "[2023-07-11 14:44:22,460] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", + "[2023-07-11 14:44:22,460] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", + "[2023-07-11 14:44:22,461] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", + "[2023-07-11 14:44:22,462] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", + "[2023-07-11 14:44:22,462] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", + "[2023-07-11 14:44:22,463] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", + "[2023-07-11 14:44:22,464] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", + "[2023-07-11 14:44:22,464] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", + "[2023-07-11 14:44:22,465] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", + "[2023-07-11 14:44:22,465] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", + "[2023-07-11 14:44:22,466] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", + "[2023-07-11 14:44:22,467] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", + "[2023-07-11 14:44:22,467] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", + "[2023-07-11 14:44:22,468] [INFO] (highdicom.seg.sop) - add plane #87 for segment #1\n", + "[2023-07-11 14:44:22,468] [INFO] (highdicom.seg.sop) - add plane #88 for segment #1\n", + "[2023-07-11 14:44:22,511] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 14:44:22,511] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", + "[2023-07-11 14:44:22,511] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 14:44:22,511] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", + "[2023-07-11 14:44:22,511] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", + "[2023-07-11 14:44:22,511] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 14:44:22,511] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", + "[2023-07-11 14:44:22,511] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", + "[2023-07-11 14:44:22,512] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", "\u001b[34mDone performing execution of operator DICOMSegmentationWriterOperator\n", "\u001b[39m\n" ] @@ -1649,11 +1648,9 @@ "name": "stdout", "output_type": "stream", "text": [ - "1.2.826.0.1.3680043.10.511.3.11380113310474555606901146118558410.dcm\n", - "1.2.826.0.1.3680043.10.511.3.12638528886405740261764352562645419.dcm\n", - "1.2.826.0.1.3680043.10.511.3.29370647554998782676447118170471432.dcm\n", - "final_output.png\n", - "output.json\n", + "1.2.826.0.1.3680043.10.511.3.10571558318884637420522234320485669.dcm\n", + "1.2.826.0.1.3680043.10.511.3.12144237274469875262273877398595532.dcm\n", + "1.2.826.0.1.3680043.10.511.3.15663327658863063131906751270244328.dcm\n", "prediction_output\n" ] } @@ -1686,57 +1683,34 @@ "output_type": "stream", "text": [ "Building MONAI Application Package... -\u001b[1A\u001b[1B\u001b[0G\u001b[?25l[+] Building 0.0s (0/1) \n", - "\u001b[?25\\\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.1s (1/2) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", - "\u001b[0m => [internal] load .dockerignore 0.1s\n", - "\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.2s (4/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[?25h\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.1s (2/2) \n", + "\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m => [internal] load build context 0.0s\n", - " => => transferring context: 0.0s\n", - "\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.3s (4/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.3s (4/19) \n", + "\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m => [internal] load build context 0.1s\n", - " => => transferring context: 12.06MB 0.1s\n", - "\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.4s (18/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + " => => transferring context: 23B 0.1s\n", + "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.4s (4/19) \n", + "\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", - "\u001b[0m\u001b[34m => => transferring context: 19.90MB 0.1s\n", "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [11/15] RUN echo \"User site package location: $(python3 -m sit 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [12/15] COPY ./map/app.json /etc/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [13/15] COPY ./map/pkg.json /etc/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [14/15] COPY ./app /opt/monai/app 0.0s\n", - "\u001b[0m => CACHED [15/15] WORKDIR /var/monai/ 0.0s\n", - "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.6s (20/20) \n", + "\u001b[0m => [internal] load build context 0.2s\n", + "\u001b[34m => => transferring context: 19.90MB 0.2s\n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.6s (20/20) \n", "\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", - "\u001b[0m\u001b[34m => => transferring context: 19.90MB 0.1s\n", "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", + "\u001b[0m\u001b[34m => => transferring context: 19.90MB 0.2s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", @@ -1753,17 +1727,17 @@ "\u001b[0m\u001b[34m => CACHED [15/15] WORKDIR /var/monai/ 0.0s\n", "\u001b[0m\u001b[34m => exporting to image 0.0s\n", "\u001b[0m\u001b[34m => => exporting layers 0.0s\n", - "\u001b[0m\u001b[34m => => writing image sha256:033e0940ef6549d435d569c6b40e8f0f6c8570c745437 0.0s\n", + "\u001b[0m\u001b[34m => => writing image sha256:9485f50a4d6282edc928dd97251ffa765623ecf212846 0.0s\n", "\u001b[0m\u001b[34m => => naming to docker.io/library/my_app:latest 0.0s\n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.6s (20/20) FINISHED \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", - "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.6s (20/20) FINISHED \n", + "\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", - "\u001b[0m\u001b[34m => => transferring context: 19.90MB 0.1s\n", "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 0.3s\n", + "\u001b[0m\u001b[34m => => transferring context: 19.90MB 0.2s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", @@ -1780,10 +1754,10 @@ "\u001b[0m\u001b[34m => CACHED [15/15] WORKDIR /var/monai/ 0.0s\n", "\u001b[0m\u001b[34m => exporting to image 0.0s\n", "\u001b[0m\u001b[34m => => exporting layers 0.0s\n", - "\u001b[0m\u001b[34m => => writing image sha256:033e0940ef6549d435d569c6b40e8f0f6c8570c745437 0.0s\n", + "\u001b[0m\u001b[34m => => writing image sha256:9485f50a4d6282edc928dd97251ffa765623ecf212846 0.0s\n", "\u001b[0m\u001b[34m => => naming to docker.io/library/my_app:latest 0.0s\n", "\u001b[0m\u001b[?25Done\n", - "[2023-07-07 13:43:48,069] [INFO] (app_packager) - Successfully built my_app:latest\n" + "[2023-07-11 14:44:28,987] [INFO] (app_packager) - Successfully built my_app:latest\n" ] } ], @@ -1811,7 +1785,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "my_app latest 033e0940ef65 17 hours ago 15GB\n" + "my_app latest 9485f50a4d62 3 hours ago 15GB\n" ] } ], @@ -1846,42 +1820,42 @@ "\"my_app:latest\" found.\n", "\n", "Reading MONAI App Package manifest...\n", - "\u001b[sPreparing to copy...\u001b[?25l\u001b[u\u001b[2KCopying from container - 0B\u001b[?25h\u001b[u\u001b[2KSuccessfully copied 2.05kB to /tmp/tmp76xtd7x0/app.json\n", - "\u001b[sPreparing to copy...\u001b[?25l\u001b[u\u001b[2KCopying from container - 0B\u001b[?25h\u001b[u\u001b[2KSuccessfully copied 2.05kB to /tmp/tmp76xtd7x0/pkg.json\n", + "\u001b[sPreparing to copy...\u001b[?25l\u001b[u\u001b[2KCopying from container - 0B\u001b[?25h\u001b[u\u001b[2KSuccessfully copied 2.05kB to /tmp/tmphnopey6n/app.json\n", + "\u001b[sPreparing to copy...\u001b[?25l\u001b[u\u001b[2KCopying from container - 0B\u001b[?25h\u001b[u\u001b[2KSuccessfully copied 2.05kB to /tmp/tmphnopey6n/pkg.json\n", "--> Verifying if \"nvidia-docker\" is installed...\n", "\n", "/opt/conda/lib/python3.8/site-packages/scipy/__init__.py:138: UserWarning: A NumPy version >=1.16.5 and <1.23.0 is required for this version of SciPy (detected version 1.24.3)\n", " warnings.warn(f\"A NumPy version >={np_minversion} and <{np_maxversion} is required for this version of \"\n", "\u001b[34mGoing to initiate execution of operator DICOMDataLoaderOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 1, Operator ID: 0cf86986-df5c-46d4-a36e-da49cd4a3ade)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 1, Operator ID: d1c5089b-3071-4485-9bb2-95dca8253064)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMDataLoaderOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesSelectorOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 1, Operator ID: 4fb266ad-96c2-43f1-887c-cff6c5ce8972)\u001b[39m\n", - "[2023-07-07 20:44:02,914] [INFO] (root) - Finding series for Selection named: CT Series\n", - "[2023-07-07 20:44:02,914] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", + "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 1, Operator ID: cc2cd155-67df-4121-9066-0321ea6d9f5a)\u001b[39m\n", + "[2023-07-11 21:44:39,915] [INFO] (root) - Finding series for Selection named: CT Series\n", + "[2023-07-11 21:44:39,915] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", " # of series: 1\n", - "[2023-07-07 20:44:02,914] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", - "[2023-07-07 20:44:02,914] [INFO] (root) - On attribute: 'StudyDescription' to match value: '(.*?)'\n", - "[2023-07-07 20:44:02,914] [INFO] (root) - Series attribute StudyDescription value: CT ABDOMEN W IV CONTRAST\n", - "[2023-07-07 20:44:02,914] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 20:44:02,914] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", - "[2023-07-07 20:44:02,914] [INFO] (root) - Series attribute Modality value: CT\n", - "[2023-07-07 20:44:02,914] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 20:44:02,914] [INFO] (root) - On attribute: 'SeriesDescription' to match value: '(.*?)'\n", - "[2023-07-07 20:44:02,914] [INFO] (root) - Series attribute SeriesDescription value: ABD/PANC 3.0 B31f\n", - "[2023-07-07 20:44:02,914] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 20:44:02,914] [INFO] (root) - On attribute: 'ImageType' to match value: '['PRIMARY', 'ORIGINAL']'\n", - "[2023-07-07 20:44:02,914] [INFO] (root) - Series attribute ImageType value: None\n", - "[2023-07-07 20:44:02,914] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "[2023-07-11 21:44:39,915] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "[2023-07-11 21:44:39,915] [INFO] (root) - On attribute: 'StudyDescription' to match value: '(.*?)'\n", + "[2023-07-11 21:44:39,915] [INFO] (root) - Series attribute StudyDescription value: CT ABDOMEN W IV CONTRAST\n", + "[2023-07-11 21:44:39,916] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 21:44:39,916] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", + "[2023-07-11 21:44:39,916] [INFO] (root) - Series attribute Modality value: CT\n", + "[2023-07-11 21:44:39,916] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 21:44:39,916] [INFO] (root) - On attribute: 'SeriesDescription' to match value: '(.*?)'\n", + "[2023-07-11 21:44:39,916] [INFO] (root) - Series attribute SeriesDescription value: ABD/PANC 3.0 B31f\n", + "[2023-07-11 21:44:39,916] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 21:44:39,916] [INFO] (root) - On attribute: 'ImageType' to match value: ['PRIMARY', 'ORIGINAL']\n", + "[2023-07-11 21:44:39,916] [INFO] (root) - Series attribute ImageType value: None\n", + "[2023-07-11 21:44:39,916] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", "\u001b[34mDone performing execution of operator DICOMSeriesSelectorOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesToVolumeOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 1, Operator ID: 231cc1a9-bc6a-4ed2-a18e-a459ac3ffe38)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 1, Operator ID: 2e5584b8-02ca-428a-afee-d33228cb029a)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMSeriesToVolumeOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator SpleenSegOperator\u001b[39m\n", - "\u001b[32mExecuting operator SpleenSegOperator \u001b[33m(Process ID: 1, Operator ID: b62e13b6-ff7f-46fe-90da-8345f708bac7)\u001b[39m\n", + "\u001b[32mExecuting operator SpleenSegOperator \u001b[33m(Process ID: 1, Operator ID: bbf3d7b1-a956-4612-a767-806aeb15f7a5)\u001b[39m\n", "/root/.local/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:321: FutureWarning: monai.transforms.io.dictionary LoadImaged.__init__:image_only: Current default value of argument `image_only=False` has been deprecated since version 1.1. It will be changed to `image_only=True` in version 1.3.\n", " warn_deprecated(argname, msg, warning_category)\n", "/root/.local/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:321: FutureWarning: monai.transforms.io.dictionary SaveImaged.__init__:resample: Current default value of argument `resample=True` has been deprecated since version 1.1. It will be changed to `resample=False` in version 1.3.\n", @@ -1915,118 +1889,118 @@ "StudyDescription: CT ABDOMEN W IV CONTRAST, type \n", "AccessionNumber: 5471978513296937, type \n", "selection_name: CT Series, type \n", - "2023-07-07 20:44:10,738 INFO image_writer.py:197 - writing: /var/monai/output/prediction_output/1.3.6.1.4.1.14519.5.2.1.7085.2626/1.3.6.1.4.1.14519.5.2.1.7085.2626_seg.nii.gz\n", + "2023-07-11 21:44:45,417 INFO image_writer.py:197 - writing: /var/monai/output/prediction_output/1.3.6.1.4.1.14519.5.2.1.7085.2626/1.3.6.1.4.1.14519.5.2.1.7085.2626_seg.nii.gz\n", "Output Seg image numpy array shaped: (204, 512, 512)\n", "Output Seg image pixel max value: 1\n", "Output Seg image pixel min value: 0\n", "\u001b[34mDone performing execution of operator SpleenSegOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSegmentationWriterOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 1, Operator ID: a731a32e-f132-4050-95fe-587b6b42f623)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 1, Operator ID: 0cf049b5-5831-41ba-95ae-141ca9fe0d17)\u001b[39m\n", "/root/.local/lib/python3.8/site-packages/highdicom/valuerep.py:54: UserWarning: The string \"C3N-00198\" is unlikely to represent the intended person name since it contains only a single component. Construct a person name according to the format in described in http://dicom.nema.org/dicom/2013/output/chtml/part05/sect_6.2.html#sect_6.2.1.2, or, in pydicom 2.2.0 or later, use the pydicom.valuerep.PersonName.from_named_components() method to construct the person name correctly. If a single-component name is really intended, add a trailing caret character to disambiguate the name.\n", " warnings.warn(\n", - "[2023-07-07 20:44:14,783] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", + "[2023-07-11 21:44:49,340] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", "/root/.local/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR UL.\n", " warnings.warn(msg)\n", "/root/.local/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR US.\n", " warnings.warn(msg)\n", - "[2023-07-07 20:44:14,785] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", - "[2023-07-07 20:44:14,786] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", - "[2023-07-07 20:44:14,787] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", - "[2023-07-07 20:44:14,788] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", - "[2023-07-07 20:44:14,788] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", - "[2023-07-07 20:44:14,789] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", - "[2023-07-07 20:44:14,790] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", - "[2023-07-07 20:44:14,791] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", - "[2023-07-07 20:44:14,791] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", - "[2023-07-07 20:44:14,792] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", - "[2023-07-07 20:44:14,793] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", - "[2023-07-07 20:44:14,793] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", - "[2023-07-07 20:44:14,794] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", - "[2023-07-07 20:44:14,795] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", - "[2023-07-07 20:44:14,795] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", - "[2023-07-07 20:44:14,796] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", - "[2023-07-07 20:44:14,797] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", - "[2023-07-07 20:44:14,798] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", - "[2023-07-07 20:44:14,798] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", - "[2023-07-07 20:44:14,799] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", - "[2023-07-07 20:44:14,800] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", - "[2023-07-07 20:44:14,800] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", - "[2023-07-07 20:44:14,801] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", - "[2023-07-07 20:44:14,802] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", - "[2023-07-07 20:44:14,802] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", - "[2023-07-07 20:44:14,803] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", - "[2023-07-07 20:44:14,804] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", - "[2023-07-07 20:44:14,805] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", - "[2023-07-07 20:44:14,806] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", - "[2023-07-07 20:44:14,807] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", - "[2023-07-07 20:44:14,807] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", - "[2023-07-07 20:44:14,808] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", - "[2023-07-07 20:44:14,809] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", - "[2023-07-07 20:44:14,810] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", - "[2023-07-07 20:44:14,810] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", - "[2023-07-07 20:44:14,811] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", - "[2023-07-07 20:44:14,812] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", - "[2023-07-07 20:44:14,812] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", - "[2023-07-07 20:44:14,813] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", - "[2023-07-07 20:44:14,814] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", - "[2023-07-07 20:44:14,815] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", - "[2023-07-07 20:44:14,815] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", - "[2023-07-07 20:44:14,816] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", - "[2023-07-07 20:44:14,817] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", - "[2023-07-07 20:44:14,817] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", - "[2023-07-07 20:44:14,818] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", - "[2023-07-07 20:44:14,819] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", - "[2023-07-07 20:44:14,819] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", - "[2023-07-07 20:44:14,820] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", - "[2023-07-07 20:44:14,821] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", - "[2023-07-07 20:44:14,822] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", - "[2023-07-07 20:44:14,823] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", - "[2023-07-07 20:44:14,823] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", - "[2023-07-07 20:44:14,824] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", - "[2023-07-07 20:44:14,825] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", - "[2023-07-07 20:44:14,825] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", - "[2023-07-07 20:44:14,826] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", - "[2023-07-07 20:44:14,827] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", - "[2023-07-07 20:44:14,827] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", - "[2023-07-07 20:44:14,828] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", - "[2023-07-07 20:44:14,829] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", - "[2023-07-07 20:44:14,830] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", - "[2023-07-07 20:44:14,830] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", - "[2023-07-07 20:44:14,831] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", - "[2023-07-07 20:44:14,832] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", - "[2023-07-07 20:44:14,832] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", - "[2023-07-07 20:44:14,833] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", - "[2023-07-07 20:44:14,834] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", - "[2023-07-07 20:44:14,834] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", - "[2023-07-07 20:44:14,835] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", - "[2023-07-07 20:44:14,836] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", - "[2023-07-07 20:44:14,836] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", - "[2023-07-07 20:44:14,837] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", - "[2023-07-07 20:44:14,838] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", - "[2023-07-07 20:44:14,839] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", - "[2023-07-07 20:44:14,839] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", - "[2023-07-07 20:44:14,840] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", - "[2023-07-07 20:44:14,841] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", - "[2023-07-07 20:44:14,841] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", - "[2023-07-07 20:44:14,842] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", - "[2023-07-07 20:44:14,843] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", - "[2023-07-07 20:44:14,843] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", - "[2023-07-07 20:44:14,844] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", - "[2023-07-07 20:44:14,845] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", - "[2023-07-07 20:44:14,846] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", - "[2023-07-07 20:44:14,846] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", - "[2023-07-07 20:44:14,847] [INFO] (highdicom.seg.sop) - add plane #87 for segment #1\n", - "[2023-07-07 20:44:14,848] [INFO] (highdicom.seg.sop) - add plane #88 for segment #1\n", - "[2023-07-07 20:44:14,908] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 20:44:14,909] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", - "[2023-07-07 20:44:14,909] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 20:44:14,909] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", - "[2023-07-07 20:44:14,909] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", - "[2023-07-07 20:44:14,909] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 20:44:14,909] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", - "[2023-07-07 20:44:14,910] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", - "[2023-07-07 20:44:14,910] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", + "[2023-07-11 21:44:49,344] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", + "[2023-07-11 21:44:49,345] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", + "[2023-07-11 21:44:49,346] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", + "[2023-07-11 21:44:49,346] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", + "[2023-07-11 21:44:49,347] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", + "[2023-07-11 21:44:49,348] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", + "[2023-07-11 21:44:49,349] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", + "[2023-07-11 21:44:49,350] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", + "[2023-07-11 21:44:49,351] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", + "[2023-07-11 21:44:49,353] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", + "[2023-07-11 21:44:49,353] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", + "[2023-07-11 21:44:49,354] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", + "[2023-07-11 21:44:49,355] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", + "[2023-07-11 21:44:49,356] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", + "[2023-07-11 21:44:49,356] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", + "[2023-07-11 21:44:49,357] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", + "[2023-07-11 21:44:49,358] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", + "[2023-07-11 21:44:49,359] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", + "[2023-07-11 21:44:49,360] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", + "[2023-07-11 21:44:49,361] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", + "[2023-07-11 21:44:49,361] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", + "[2023-07-11 21:44:49,362] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", + "[2023-07-11 21:44:49,363] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", + "[2023-07-11 21:44:49,364] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", + "[2023-07-11 21:44:49,365] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", + "[2023-07-11 21:44:49,366] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", + "[2023-07-11 21:44:49,366] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", + "[2023-07-11 21:44:49,367] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", + "[2023-07-11 21:44:49,368] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", + "[2023-07-11 21:44:49,369] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", + "[2023-07-11 21:44:49,370] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", + "[2023-07-11 21:44:49,371] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", + "[2023-07-11 21:44:49,372] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", + "[2023-07-11 21:44:49,373] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", + "[2023-07-11 21:44:49,373] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", + "[2023-07-11 21:44:49,374] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", + "[2023-07-11 21:44:49,375] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", + "[2023-07-11 21:44:49,376] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", + "[2023-07-11 21:44:49,377] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", + "[2023-07-11 21:44:49,377] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", + "[2023-07-11 21:44:49,378] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", + "[2023-07-11 21:44:49,379] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", + "[2023-07-11 21:44:49,380] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", + "[2023-07-11 21:44:49,381] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", + "[2023-07-11 21:44:49,381] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", + "[2023-07-11 21:44:49,382] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", + "[2023-07-11 21:44:49,383] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", + "[2023-07-11 21:44:49,384] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", + "[2023-07-11 21:44:49,385] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", + "[2023-07-11 21:44:49,385] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", + "[2023-07-11 21:44:49,386] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", + "[2023-07-11 21:44:49,387] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", + "[2023-07-11 21:44:49,388] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", + "[2023-07-11 21:44:49,389] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", + "[2023-07-11 21:44:49,389] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", + "[2023-07-11 21:44:49,390] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", + "[2023-07-11 21:44:49,391] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", + "[2023-07-11 21:44:49,392] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", + "[2023-07-11 21:44:49,393] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", + "[2023-07-11 21:44:49,393] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", + "[2023-07-11 21:44:49,394] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", + "[2023-07-11 21:44:49,395] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", + "[2023-07-11 21:44:49,396] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", + "[2023-07-11 21:44:49,397] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", + "[2023-07-11 21:44:49,397] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", + "[2023-07-11 21:44:49,398] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", + "[2023-07-11 21:44:49,399] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", + "[2023-07-11 21:44:49,400] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", + "[2023-07-11 21:44:49,401] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", + "[2023-07-11 21:44:49,401] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", + "[2023-07-11 21:44:49,402] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", + "[2023-07-11 21:44:49,403] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", + "[2023-07-11 21:44:49,404] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", + "[2023-07-11 21:44:49,405] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", + "[2023-07-11 21:44:49,405] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", + "[2023-07-11 21:44:49,406] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", + "[2023-07-11 21:44:49,407] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", + "[2023-07-11 21:44:49,408] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", + "[2023-07-11 21:44:49,409] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", + "[2023-07-11 21:44:49,410] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", + "[2023-07-11 21:44:49,411] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", + "[2023-07-11 21:44:49,411] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", + "[2023-07-11 21:44:49,412] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", + "[2023-07-11 21:44:49,413] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", + "[2023-07-11 21:44:49,414] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", + "[2023-07-11 21:44:49,415] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", + "[2023-07-11 21:44:49,416] [INFO] (highdicom.seg.sop) - add plane #87 for segment #1\n", + "[2023-07-11 21:44:49,416] [INFO] (highdicom.seg.sop) - add plane #88 for segment #1\n", + "[2023-07-11 21:44:49,455] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 21:44:49,455] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", + "[2023-07-11 21:44:49,455] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 21:44:49,455] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", + "[2023-07-11 21:44:49,456] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", + "[2023-07-11 21:44:49,456] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 21:44:49,456] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", + "[2023-07-11 21:44:49,456] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", + "[2023-07-11 21:44:49,457] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", "\u001b[34mDone performing execution of operator DICOMSegmentationWriterOperator\n", "\u001b[39m\n" ] @@ -2048,12 +2022,10 @@ "name": "stdout", "output_type": "stream", "text": [ - "1.2.826.0.1.3680043.10.511.3.11380113310474555606901146118558410.dcm\n", - "1.2.826.0.1.3680043.10.511.3.12638528886405740261764352562645419.dcm\n", - "1.2.826.0.1.3680043.10.511.3.29370647554998782676447118170471432.dcm\n", - "1.2.826.0.1.3680043.10.511.3.73617480632005736808875924888841056.dcm\n", - "final_output.png\n", - "output.json\n", + "1.2.826.0.1.3680043.10.511.3.10244703360629531285757652322316746.dcm\n", + "1.2.826.0.1.3680043.10.511.3.10571558318884637420522234320485669.dcm\n", + "1.2.826.0.1.3680043.10.511.3.12144237274469875262273877398595532.dcm\n", + "1.2.826.0.1.3680043.10.511.3.15663327658863063131906751270244328.dcm\n", "prediction_output\n" ] } diff --git a/notebooks/tutorials/03_segmentation_viz_app.ipynb b/notebooks/tutorials/03_segmentation_viz_app.ipynb index 35f6324e..acbbf387 100644 --- a/notebooks/tutorials/03_segmentation_viz_app.ipynb +++ b/notebooks/tutorials/03_segmentation_viz_app.ipynb @@ -103,17 +103,7 @@ "cell_type": "code", "execution_count": 1, "metadata": {}, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Traceback (most recent call last):\n", - " File \"\", line 1, in \n", - "ModuleNotFoundError: No module named 'clara'\n" - ] - } - ], + "outputs": [], "source": [ "# Install MONAI and other necessary image processing packages for the application\n", "!python -c \"import monai\" || pip install --upgrade -q \"monai\"\n", @@ -123,7 +113,6 @@ "!python -c \"import pydicom\" || pip install -q \"pydicom>=1.4.2\"\n", "!python -c \"import highdicom\" || pip install -q \"highdicom>=0.18.2\"\n", "!python -c \"import SimpleITK\" || pip install -q \"SimpleITK>=2.0.0\"\n", - "!python -c \"import typeguard\" || pip install -q \"typeguard~=2.12.1\"\n", "\n", "# Install MONAI Deploy App SDK package\n", "!python -c \"import monai.deploy\" || pip install --upgrade -q \"monai-deploy-app-sdk\"\n", @@ -162,16 +151,16 @@ "Requirement already satisfied: tqdm in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from gdown) (4.65.0)\n", "Requirement already satisfied: beautifulsoup4 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from gdown) (4.12.2)\n", "Requirement already satisfied: soupsieve>1.2 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from beautifulsoup4->gdown) (2.4.1)\n", - "Requirement already satisfied: charset-normalizer<4,>=2 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (3.1.0)\n", + "Requirement already satisfied: charset-normalizer<4,>=2 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (3.2.0)\n", "Requirement already satisfied: idna<4,>=2.5 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (3.4)\n", "Requirement already satisfied: urllib3<3,>=1.21.1 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (2.0.3)\n", "Requirement already satisfied: certifi>=2017.4.17 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (2023.5.7)\n", "Requirement already satisfied: PySocks!=1.5.7,>=1.5.6 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (1.7.1)\n", "Downloading...\n", "From (uriginal): https://drive.google.com/uc?id=1Uds8mEvdGNYUuvFpTtCQ8gNU97bAPCaQ\n", - "From (redirected): https://drive.google.com/uc?id=1Uds8mEvdGNYUuvFpTtCQ8gNU97bAPCaQ&confirm=t&uuid=2dfa58ce-3d77-4f31-be3e-67a2a9687c46\n", + "From (redirected): https://drive.google.com/uc?id=1Uds8mEvdGNYUuvFpTtCQ8gNU97bAPCaQ&confirm=t&uuid=3176b349-199a-47dc-9369-bdbe3ca06664\n", "To: /home/mqin/src/monai-deploy-app-sdk/notebooks/tutorials/ai_spleen_seg_bundle_data.zip\n", - "100%|██████████████████████████████████████| 79.4M/79.4M [00:00<00:00, 86.7MB/s]\n", + "100%|██████████████████████████████████████| 79.4M/79.4M [00:00<00:00, 87.4MB/s]\n", "Archive: ai_spleen_seg_bundle_data.zip\n", " inflating: dcm/1-001.dcm \n", " inflating: dcm/1-002.dcm \n", @@ -687,29 +676,29 @@ "output_type": "stream", "text": [ "\u001b[34mGoing to initiate execution of operator DICOMDataLoaderOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 211765, Operator ID: 0e458327-0103-4dd0-8766-52542db8e86e)\u001b[39m\n" + "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 412849, Operator ID: ed12e95b-4daf-46e6-bd6a-e9c85b17144a)\u001b[39m\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "[2023-07-07 14:36:26,495] [INFO] (root) - Finding series for Selection named: CT Series\n", - "[2023-07-07 14:36:26,496] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", + "[2023-07-11 14:56:17,150] [INFO] (root) - Finding series for Selection named: CT Series\n", + "[2023-07-11 14:56:17,151] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", " # of series: 1\n", - "[2023-07-07 14:36:26,497] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", - "[2023-07-07 14:36:26,498] [INFO] (root) - On attribute: 'StudyDescription' to match value: '(.*?)'\n", - "[2023-07-07 14:36:26,499] [INFO] (root) - Series attribute StudyDescription value: CT ABDOMEN W IV CONTRAST\n", - "[2023-07-07 14:36:26,500] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 14:36:26,501] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", - "[2023-07-07 14:36:26,502] [INFO] (root) - Series attribute Modality value: CT\n", - "[2023-07-07 14:36:26,503] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 14:36:26,504] [INFO] (root) - On attribute: 'SeriesDescription' to match value: '(.*?)'\n", - "[2023-07-07 14:36:26,505] [INFO] (root) - Series attribute SeriesDescription value: ABD/PANC 3.0 B31f\n", - "[2023-07-07 14:36:26,506] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 14:36:26,508] [INFO] (root) - On attribute: 'ImageType' to match value: '['PRIMARY', 'ORIGINAL']'\n", - "[2023-07-07 14:36:26,509] [INFO] (root) - Series attribute ImageType value: None\n", - "[2023-07-07 14:36:26,510] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n" + "[2023-07-11 14:56:17,152] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "[2023-07-11 14:56:17,153] [INFO] (root) - On attribute: 'StudyDescription' to match value: '(.*?)'\n", + "[2023-07-11 14:56:17,153] [INFO] (root) - Series attribute StudyDescription value: CT ABDOMEN W IV CONTRAST\n", + "[2023-07-11 14:56:17,154] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 14:56:17,154] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", + "[2023-07-11 14:56:17,155] [INFO] (root) - Series attribute Modality value: CT\n", + "[2023-07-11 14:56:17,156] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 14:56:17,157] [INFO] (root) - On attribute: 'SeriesDescription' to match value: '(.*?)'\n", + "[2023-07-11 14:56:17,157] [INFO] (root) - Series attribute SeriesDescription value: ABD/PANC 3.0 B31f\n", + "[2023-07-11 14:56:17,158] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 14:56:17,158] [INFO] (root) - On attribute: 'ImageType' to match value: ['PRIMARY', 'ORIGINAL']\n", + "[2023-07-11 14:56:17,159] [INFO] (root) - Series attribute ImageType value: None\n", + "[2023-07-11 14:56:17,160] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n" ] }, { @@ -719,15 +708,15 @@ "\u001b[34mDone performing execution of operator DICOMDataLoaderOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesSelectorOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 211765, Operator ID: ef99e85d-d5b2-4bd8-b2b3-bf2cda668986)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 412849, Operator ID: aac4ac9a-9e6d-4f18-9c42-a3fd95e08f96)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMSeriesSelectorOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesToVolumeOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 211765, Operator ID: 97c25ad9-7d4e-4613-88fc-d16490d566f2)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 412849, Operator ID: 79922d9d-4359-461e-a297-a40367bc14a7)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMSeriesToVolumeOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator SpleenSegOperator\u001b[39m\n", - "\u001b[32mExecuting operator SpleenSegOperator \u001b[33m(Process ID: 211765, Operator ID: eb79d9b8-ca22-475d-81b2-4b53de7d4f40)\u001b[39m\n", + "\u001b[32mExecuting operator SpleenSegOperator \u001b[33m(Process ID: 412849, Operator ID: 6eeb04c6-e0ab-48bc-a733-1cbea38c3dd1)\u001b[39m\n", "Converted Image object metadata:\n", "SeriesInstanceUID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239, type \n", "SeriesDate: 20090831, type \n", @@ -773,14 +762,14 @@ "name": "stdout", "output_type": "stream", "text": [ - "2023-07-07 14:36:35,549 INFO image_writer.py:197 - writing: /home/mqin/src/monai-deploy-app-sdk/notebooks/tutorials/output/prediction_output/1.3.6.1.4.1.14519.5.2.1.7085.2626/1.3.6.1.4.1.14519.5.2.1.7085.2626_seg.nii.gz\n", + "2023-07-11 14:56:23,420 INFO image_writer.py:197 - writing: /home/mqin/src/monai-deploy-app-sdk/notebooks/tutorials/output/prediction_output/1.3.6.1.4.1.14519.5.2.1.7085.2626/1.3.6.1.4.1.14519.5.2.1.7085.2626_seg.nii.gz\n", "Output Seg image numpy array shaped: (204, 512, 512)\n", "Output Seg image pixel max value: 1\n", "Output Seg image pixel min value: 0\n", "\u001b[34mDone performing execution of operator SpleenSegOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSegmentationWriterOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 211765, Operator ID: 99726ee9-8c11-4529-859b-d8a772001fb9)\u001b[39m\n" + "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 412849, Operator ID: a50aca00-6c19-40aa-88dc-4078a008dc0a)\u001b[39m\n" ] }, { @@ -789,108 +778,108 @@ "text": [ "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/highdicom/valuerep.py:54: UserWarning: The string \"C3N-00198\" is unlikely to represent the intended person name since it contains only a single component. Construct a person name according to the format in described in http://dicom.nema.org/dicom/2013/output/chtml/part05/sect_6.2.html#sect_6.2.1.2, or, in pydicom 2.2.0 or later, use the pydicom.valuerep.PersonName.from_named_components() method to construct the person name correctly. If a single-component name is really intended, add a trailing caret character to disambiguate the name.\n", " warnings.warn(\n", - "[2023-07-07 14:36:39,759] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", + "[2023-07-11 14:56:27,568] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR UL.\n", " warnings.warn(msg)\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR US.\n", " warnings.warn(msg)\n", - "[2023-07-07 14:36:39,761] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", - "[2023-07-07 14:36:39,763] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", - "[2023-07-07 14:36:39,764] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", - "[2023-07-07 14:36:39,766] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", - "[2023-07-07 14:36:39,767] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", - "[2023-07-07 14:36:39,768] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", - "[2023-07-07 14:36:39,771] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", - "[2023-07-07 14:36:39,772] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", - "[2023-07-07 14:36:39,773] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", - "[2023-07-07 14:36:39,775] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", - "[2023-07-07 14:36:39,776] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", - "[2023-07-07 14:36:39,777] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", - "[2023-07-07 14:36:39,779] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", - "[2023-07-07 14:36:39,780] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", - "[2023-07-07 14:36:39,782] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", - "[2023-07-07 14:36:39,783] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", - "[2023-07-07 14:36:39,784] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", - "[2023-07-07 14:36:39,786] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", - "[2023-07-07 14:36:39,787] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", - "[2023-07-07 14:36:39,789] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", - "[2023-07-07 14:36:39,790] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", - "[2023-07-07 14:36:39,791] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", - "[2023-07-07 14:36:39,793] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", - "[2023-07-07 14:36:39,794] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", - "[2023-07-07 14:36:39,796] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", - "[2023-07-07 14:36:39,798] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", - "[2023-07-07 14:36:39,799] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", - "[2023-07-07 14:36:39,801] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", - "[2023-07-07 14:36:39,803] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", - "[2023-07-07 14:36:39,805] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", - "[2023-07-07 14:36:39,807] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", - "[2023-07-07 14:36:39,809] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", - "[2023-07-07 14:36:39,811] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", - "[2023-07-07 14:36:39,813] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", - "[2023-07-07 14:36:39,816] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", - "[2023-07-07 14:36:39,818] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", - "[2023-07-07 14:36:39,820] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", - "[2023-07-07 14:36:39,822] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", - "[2023-07-07 14:36:39,825] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", - "[2023-07-07 14:36:39,827] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", - "[2023-07-07 14:36:39,829] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", - "[2023-07-07 14:36:39,832] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", - "[2023-07-07 14:36:39,840] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", - "[2023-07-07 14:36:39,843] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", - "[2023-07-07 14:36:39,846] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", - "[2023-07-07 14:36:39,848] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", - "[2023-07-07 14:36:39,850] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", - "[2023-07-07 14:36:39,853] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", - "[2023-07-07 14:36:39,855] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", - "[2023-07-07 14:36:39,858] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", - "[2023-07-07 14:36:39,860] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", - "[2023-07-07 14:36:39,863] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", - "[2023-07-07 14:36:39,865] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", - "[2023-07-07 14:36:39,867] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", - "[2023-07-07 14:36:39,869] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", - "[2023-07-07 14:36:39,871] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", - "[2023-07-07 14:36:39,874] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", - "[2023-07-07 14:36:39,876] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", - "[2023-07-07 14:36:39,878] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", - "[2023-07-07 14:36:39,879] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", - "[2023-07-07 14:36:39,881] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", - "[2023-07-07 14:36:39,883] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", - "[2023-07-07 14:36:39,885] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", - "[2023-07-07 14:36:39,886] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", - "[2023-07-07 14:36:39,888] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", - "[2023-07-07 14:36:39,890] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", - "[2023-07-07 14:36:39,891] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", - "[2023-07-07 14:36:39,893] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", - "[2023-07-07 14:36:39,894] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", - "[2023-07-07 14:36:39,895] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", - "[2023-07-07 14:36:39,897] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", - "[2023-07-07 14:36:39,899] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", - "[2023-07-07 14:36:39,901] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", - "[2023-07-07 14:36:39,902] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", - "[2023-07-07 14:36:39,904] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", - "[2023-07-07 14:36:39,905] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", - "[2023-07-07 14:36:39,907] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", - "[2023-07-07 14:36:39,908] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", - "[2023-07-07 14:36:39,910] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", - "[2023-07-07 14:36:39,912] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", - "[2023-07-07 14:36:39,913] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", - "[2023-07-07 14:36:39,915] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", - "[2023-07-07 14:36:39,916] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", - "[2023-07-07 14:36:39,918] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", - "[2023-07-07 14:36:39,920] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", - "[2023-07-07 14:36:39,921] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", - "[2023-07-07 14:36:39,923] [INFO] (highdicom.seg.sop) - add plane #87 for segment #1\n", - "[2023-07-07 14:36:39,925] [INFO] (highdicom.seg.sop) - add plane #88 for segment #1\n", - "[2023-07-07 14:36:39,967] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:36:39,969] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", - "[2023-07-07 14:36:39,970] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:36:39,971] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", - "[2023-07-07 14:36:39,972] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", - "[2023-07-07 14:36:39,973] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:36:39,975] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", - "[2023-07-07 14:36:39,976] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", - "[2023-07-07 14:36:39,977] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n" + "[2023-07-11 14:56:27,571] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", + "[2023-07-11 14:56:27,572] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", + "[2023-07-11 14:56:27,574] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", + "[2023-07-11 14:56:27,575] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", + "[2023-07-11 14:56:27,576] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", + "[2023-07-11 14:56:27,577] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", + "[2023-07-11 14:56:27,579] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", + "[2023-07-11 14:56:27,580] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", + "[2023-07-11 14:56:27,581] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", + "[2023-07-11 14:56:27,582] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", + "[2023-07-11 14:56:27,583] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", + "[2023-07-11 14:56:27,584] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", + "[2023-07-11 14:56:27,586] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", + "[2023-07-11 14:56:27,587] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", + "[2023-07-11 14:56:27,588] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", + "[2023-07-11 14:56:27,589] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", + "[2023-07-11 14:56:27,590] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", + "[2023-07-11 14:56:27,592] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", + "[2023-07-11 14:56:27,593] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", + "[2023-07-11 14:56:27,594] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", + "[2023-07-11 14:56:27,595] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", + "[2023-07-11 14:56:27,597] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", + "[2023-07-11 14:56:27,598] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", + "[2023-07-11 14:56:27,599] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", + "[2023-07-11 14:56:27,600] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", + "[2023-07-11 14:56:27,601] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", + "[2023-07-11 14:56:27,603] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", + "[2023-07-11 14:56:27,604] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", + "[2023-07-11 14:56:27,605] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", + "[2023-07-11 14:56:27,607] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", + "[2023-07-11 14:56:27,608] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", + "[2023-07-11 14:56:27,609] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", + "[2023-07-11 14:56:27,610] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", + "[2023-07-11 14:56:27,612] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", + "[2023-07-11 14:56:27,614] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", + "[2023-07-11 14:56:27,616] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", + "[2023-07-11 14:56:27,618] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", + "[2023-07-11 14:56:27,619] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", + "[2023-07-11 14:56:27,620] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", + "[2023-07-11 14:56:27,622] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", + "[2023-07-11 14:56:27,623] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", + "[2023-07-11 14:56:27,625] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", + "[2023-07-11 14:56:27,626] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", + "[2023-07-11 14:56:27,628] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", + "[2023-07-11 14:56:27,630] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", + "[2023-07-11 14:56:27,631] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", + "[2023-07-11 14:56:27,633] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", + "[2023-07-11 14:56:27,635] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", + "[2023-07-11 14:56:27,636] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", + "[2023-07-11 14:56:27,638] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", + "[2023-07-11 14:56:27,640] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", + "[2023-07-11 14:56:27,641] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", + "[2023-07-11 14:56:27,643] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", + "[2023-07-11 14:56:27,645] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", + "[2023-07-11 14:56:27,646] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", + "[2023-07-11 14:56:27,648] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", + "[2023-07-11 14:56:27,650] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", + "[2023-07-11 14:56:27,652] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", + "[2023-07-11 14:56:27,653] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", + "[2023-07-11 14:56:27,655] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", + "[2023-07-11 14:56:27,657] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", + "[2023-07-11 14:56:27,659] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", + "[2023-07-11 14:56:27,661] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", + "[2023-07-11 14:56:27,663] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", + "[2023-07-11 14:56:27,665] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", + "[2023-07-11 14:56:27,667] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", + "[2023-07-11 14:56:27,669] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", + "[2023-07-11 14:56:27,671] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", + "[2023-07-11 14:56:27,673] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", + "[2023-07-11 14:56:27,674] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", + "[2023-07-11 14:56:27,676] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", + "[2023-07-11 14:56:27,678] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", + "[2023-07-11 14:56:27,680] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", + "[2023-07-11 14:56:27,682] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", + "[2023-07-11 14:56:27,684] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", + "[2023-07-11 14:56:27,686] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", + "[2023-07-11 14:56:27,689] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", + "[2023-07-11 14:56:27,691] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", + "[2023-07-11 14:56:27,693] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", + "[2023-07-11 14:56:27,695] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", + "[2023-07-11 14:56:27,697] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", + "[2023-07-11 14:56:27,699] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", + "[2023-07-11 14:56:27,701] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", + "[2023-07-11 14:56:27,703] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", + "[2023-07-11 14:56:27,705] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", + "[2023-07-11 14:56:27,706] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", + "[2023-07-11 14:56:27,708] [INFO] (highdicom.seg.sop) - add plane #87 for segment #1\n", + "[2023-07-11 14:56:27,710] [INFO] (highdicom.seg.sop) - add plane #88 for segment #1\n", + "[2023-07-11 14:56:27,768] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 14:56:27,769] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", + "[2023-07-11 14:56:27,770] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 14:56:27,770] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", + "[2023-07-11 14:56:27,771] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", + "[2023-07-11 14:56:27,772] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 14:56:27,773] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", + "[2023-07-11 14:56:27,774] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", + "[2023-07-11 14:56:27,774] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n" ] }, { @@ -900,13 +889,13 @@ "\u001b[34mDone performing execution of operator DICOMSegmentationWriterOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator ClaraVizOperator\u001b[39m\n", - "\u001b[32mExecuting operator ClaraVizOperator \u001b[33m(Process ID: 211765, Operator ID: fb52f1e3-9e2f-4300-ab8b-2fa3073e46fe)\u001b[39m\n" + "\u001b[32mExecuting operator ClaraVizOperator \u001b[33m(Process ID: 412849, Operator ID: 094b97fb-3465-47f5-a1c2-02f8456ecfc7)\u001b[39m\n" ] }, { "data": { "application/vnd.jupyter.widget-view+json": { - "model_id": "718e08b25b254f6cbf852dccd22a2088", + "model_id": "b09ebff991df4ec1af617462ebf8fa6d", "version_major": 2, "version_minor": 0 }, @@ -979,7 +968,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "Overwriting my_app/spleen_seg_operator.py\n" + "Writing my_app/spleen_seg_operator.py\n" ] } ], @@ -1109,7 +1098,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "Overwriting my_app/app.py\n" + "Writing my_app/app.py\n" ] } ], @@ -1277,7 +1266,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "Overwriting my_app/__main__.py\n" + "Writing my_app/__main__.py\n" ] } ], @@ -1298,7 +1287,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "app.py\t__main__.py __pycache__ spleen_seg_operator.py\n" + "app.py\t__main__.py spleen_seg_operator.py\n" ] } ], @@ -1323,31 +1312,31 @@ "output_type": "stream", "text": [ "\u001b[34mGoing to initiate execution of operator DICOMDataLoaderOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 212097, Operator ID: 4adb2bdd-5d97-40b1-9f62-29142b53a7ca)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 413147, Operator ID: 6d4e2ff8-5623-4cdc-ba8f-c38bc4139434)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMDataLoaderOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesSelectorOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 212097, Operator ID: 33fccd82-c264-43ee-82fe-f25d6b28f11e)\u001b[39m\n", - "[2023-07-07 14:36:54,596] [INFO] (root) - Finding series for Selection named: CT Series\n", - "[2023-07-07 14:36:54,596] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", + "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 413147, Operator ID: fedb71fb-be5f-4299-ac02-d916869be73c)\u001b[39m\n", + "[2023-07-11 14:56:39,712] [INFO] (root) - Finding series for Selection named: CT Series\n", + "[2023-07-11 14:56:39,712] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", " # of series: 1\n", - "[2023-07-07 14:36:54,596] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", - "[2023-07-07 14:36:54,596] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", - "[2023-07-07 14:36:54,596] [INFO] (root) - Series attribute Modality value: CT\n", - "[2023-07-07 14:36:54,596] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 14:36:54,596] [INFO] (root) - On attribute: 'ImageType' to match value: '['PRIMARY', 'ORIGINAL']'\n", - "[2023-07-07 14:36:54,596] [INFO] (root) - Series attribute ImageType value: None\n", - "[2023-07-07 14:36:54,596] [INFO] (root) - On attribute: 'PhotometricInterpretation' to match value: 'MONOCHROME2'\n", - "[2023-07-07 14:36:54,597] [INFO] (root) - Series attribute PhotometricInterpretation value: None\n", - "[2023-07-07 14:36:54,597] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "[2023-07-11 14:56:39,712] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "[2023-07-11 14:56:39,712] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", + "[2023-07-11 14:56:39,712] [INFO] (root) - Series attribute Modality value: CT\n", + "[2023-07-11 14:56:39,712] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 14:56:39,712] [INFO] (root) - On attribute: 'ImageType' to match value: ['PRIMARY', 'ORIGINAL']\n", + "[2023-07-11 14:56:39,712] [INFO] (root) - Series attribute ImageType value: None\n", + "[2023-07-11 14:56:39,712] [INFO] (root) - On attribute: 'PhotometricInterpretation' to match value: 'MONOCHROME2'\n", + "[2023-07-11 14:56:39,712] [INFO] (root) - Series attribute PhotometricInterpretation value: None\n", + "[2023-07-11 14:56:39,712] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", "\u001b[34mDone performing execution of operator DICOMSeriesSelectorOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesToVolumeOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 212097, Operator ID: 24c07142-8bb8-4437-a570-acfea12d8d06)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 413147, Operator ID: c08d5807-b4e2-4d1e-a6e3-1dfacd650809)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMSeriesToVolumeOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator SpleenSegOperator\u001b[39m\n", - "\u001b[32mExecuting operator SpleenSegOperator \u001b[33m(Process ID: 212097, Operator ID: 702eec65-4184-4e51-b623-0dd08e81ec0e)\u001b[39m\n", + "\u001b[32mExecuting operator SpleenSegOperator \u001b[33m(Process ID: 413147, Operator ID: 155d95e1-c9ec-46ee-90c3-fbf962cc2441)\u001b[39m\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:321: FutureWarning: monai.transforms.io.dictionary LoadImaged.__init__:image_only: Current default value of argument `image_only=False` has been deprecated since version 1.1. It will be changed to `image_only=True` in version 1.3.\n", " warn_deprecated(argname, msg, warning_category)\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:321: FutureWarning: monai.transforms.io.dictionary SaveImaged.__init__:resample: Current default value of argument `resample=True` has been deprecated since version 1.1. It will be changed to `resample=False` in version 1.3.\n", @@ -1381,122 +1370,122 @@ "StudyDescription: CT ABDOMEN W IV CONTRAST, type \n", "AccessionNumber: 5471978513296937, type \n", "selection_name: CT Series, type \n", - "2023-07-07 14:37:00,427 INFO image_writer.py:197 - writing: /home/mqin/src/monai-deploy-app-sdk/notebooks/tutorials/output/prediction_output/1.3.6.1.4.1.14519.5.2.1.7085.2626/1.3.6.1.4.1.14519.5.2.1.7085.2626_seg.nii.gz\n", + "2023-07-11 14:56:44,998 INFO image_writer.py:197 - writing: /home/mqin/src/monai-deploy-app-sdk/notebooks/tutorials/output/prediction_output/1.3.6.1.4.1.14519.5.2.1.7085.2626/1.3.6.1.4.1.14519.5.2.1.7085.2626_seg.nii.gz\n", "Output Seg image numpy array shaped: (204, 512, 512)\n", "Output Seg image pixel max value: 1\n", "Output Seg image pixel min value: 0\n", "\u001b[34mDone performing execution of operator SpleenSegOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSegmentationWriterOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 212097, Operator ID: ac0acf54-aeb0-47a3-a76e-c7a483823e6f)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 413147, Operator ID: c70ef4f8-cc8c-42c7-b172-5530b751b93a)\u001b[39m\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/highdicom/valuerep.py:54: UserWarning: The string \"C3N-00198\" is unlikely to represent the intended person name since it contains only a single component. Construct a person name according to the format in described in http://dicom.nema.org/dicom/2013/output/chtml/part05/sect_6.2.html#sect_6.2.1.2, or, in pydicom 2.2.0 or later, use the pydicom.valuerep.PersonName.from_named_components() method to construct the person name correctly. If a single-component name is really intended, add a trailing caret character to disambiguate the name.\n", " warnings.warn(\n", - "[2023-07-07 14:37:05,027] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", + "[2023-07-11 14:56:49,139] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR UL.\n", " warnings.warn(msg)\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR US.\n", " warnings.warn(msg)\n", - "[2023-07-07 14:37:05,030] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", - "[2023-07-07 14:37:05,031] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", - "[2023-07-07 14:37:05,031] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", - "[2023-07-07 14:37:05,032] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", - "[2023-07-07 14:37:05,032] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", - "[2023-07-07 14:37:05,033] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", - "[2023-07-07 14:37:05,034] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", - "[2023-07-07 14:37:05,034] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", - "[2023-07-07 14:37:05,035] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", - "[2023-07-07 14:37:05,035] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", - "[2023-07-07 14:37:05,036] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", - "[2023-07-07 14:37:05,037] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", - "[2023-07-07 14:37:05,037] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", - "[2023-07-07 14:37:05,038] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", - "[2023-07-07 14:37:05,038] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", - "[2023-07-07 14:37:05,039] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", - "[2023-07-07 14:37:05,040] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", - "[2023-07-07 14:37:05,041] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", - "[2023-07-07 14:37:05,041] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", - "[2023-07-07 14:37:05,042] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", - "[2023-07-07 14:37:05,043] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", - "[2023-07-07 14:37:05,043] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", - "[2023-07-07 14:37:05,044] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", - "[2023-07-07 14:37:05,045] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", - "[2023-07-07 14:37:05,045] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", - "[2023-07-07 14:37:05,046] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", - "[2023-07-07 14:37:05,046] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", - "[2023-07-07 14:37:05,047] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", - "[2023-07-07 14:37:05,048] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", - "[2023-07-07 14:37:05,048] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", - "[2023-07-07 14:37:05,049] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", - "[2023-07-07 14:37:05,049] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", - "[2023-07-07 14:37:05,050] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", - "[2023-07-07 14:37:05,051] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", - "[2023-07-07 14:37:05,051] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", - "[2023-07-07 14:37:05,052] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", - "[2023-07-07 14:37:05,052] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", - "[2023-07-07 14:37:05,053] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", - "[2023-07-07 14:37:05,054] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", - "[2023-07-07 14:37:05,054] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", - "[2023-07-07 14:37:05,055] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", - "[2023-07-07 14:37:05,055] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", - "[2023-07-07 14:37:05,056] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", - "[2023-07-07 14:37:05,056] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", - "[2023-07-07 14:37:05,057] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", - "[2023-07-07 14:37:05,058] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", - "[2023-07-07 14:37:05,058] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", - "[2023-07-07 14:37:05,059] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", - "[2023-07-07 14:37:05,059] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", - "[2023-07-07 14:37:05,060] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", - "[2023-07-07 14:37:05,061] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", - "[2023-07-07 14:37:05,061] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", - "[2023-07-07 14:37:05,062] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", - "[2023-07-07 14:37:05,062] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", - "[2023-07-07 14:37:05,063] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", - "[2023-07-07 14:37:05,064] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", - "[2023-07-07 14:37:05,064] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", - "[2023-07-07 14:37:05,065] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", - "[2023-07-07 14:37:05,065] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", - "[2023-07-07 14:37:05,066] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", - "[2023-07-07 14:37:05,067] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", - "[2023-07-07 14:37:05,067] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", - "[2023-07-07 14:37:05,068] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", - "[2023-07-07 14:37:05,069] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", - "[2023-07-07 14:37:05,070] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", - "[2023-07-07 14:37:05,070] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", - "[2023-07-07 14:37:05,071] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", - "[2023-07-07 14:37:05,072] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", - "[2023-07-07 14:37:05,073] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", - "[2023-07-07 14:37:05,074] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", - "[2023-07-07 14:37:05,074] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", - "[2023-07-07 14:37:05,075] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", - "[2023-07-07 14:37:05,075] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", - "[2023-07-07 14:37:05,076] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", - "[2023-07-07 14:37:05,077] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", - "[2023-07-07 14:37:05,077] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", - "[2023-07-07 14:37:05,078] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", - "[2023-07-07 14:37:05,078] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", - "[2023-07-07 14:37:05,079] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", - "[2023-07-07 14:37:05,079] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", - "[2023-07-07 14:37:05,080] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", - "[2023-07-07 14:37:05,081] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", - "[2023-07-07 14:37:05,081] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", - "[2023-07-07 14:37:05,082] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", - "[2023-07-07 14:37:05,083] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", - "[2023-07-07 14:37:05,084] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", - "[2023-07-07 14:37:05,084] [INFO] (highdicom.seg.sop) - add plane #87 for segment #1\n", - "[2023-07-07 14:37:05,085] [INFO] (highdicom.seg.sop) - add plane #88 for segment #1\n", - "[2023-07-07 14:37:05,186] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:37:05,186] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", - "[2023-07-07 14:37:05,186] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:37:05,186] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", - "[2023-07-07 14:37:05,186] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", - "[2023-07-07 14:37:05,186] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:37:05,186] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", - "[2023-07-07 14:37:05,186] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", - "[2023-07-07 14:37:05,187] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", + "[2023-07-11 14:56:49,141] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", + "[2023-07-11 14:56:49,141] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", + "[2023-07-11 14:56:49,142] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", + "[2023-07-11 14:56:49,143] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", + "[2023-07-11 14:56:49,143] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", + "[2023-07-11 14:56:49,144] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", + "[2023-07-11 14:56:49,144] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", + "[2023-07-11 14:56:49,145] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", + "[2023-07-11 14:56:49,146] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", + "[2023-07-11 14:56:49,146] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", + "[2023-07-11 14:56:49,147] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", + "[2023-07-11 14:56:49,147] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", + "[2023-07-11 14:56:49,148] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", + "[2023-07-11 14:56:49,148] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", + "[2023-07-11 14:56:49,149] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", + "[2023-07-11 14:56:49,150] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", + "[2023-07-11 14:56:49,150] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", + "[2023-07-11 14:56:49,151] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", + "[2023-07-11 14:56:49,151] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", + "[2023-07-11 14:56:49,152] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", + "[2023-07-11 14:56:49,153] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", + "[2023-07-11 14:56:49,153] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", + "[2023-07-11 14:56:49,154] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", + "[2023-07-11 14:56:49,154] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", + "[2023-07-11 14:56:49,155] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", + "[2023-07-11 14:56:49,155] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", + "[2023-07-11 14:56:49,156] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", + "[2023-07-11 14:56:49,157] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", + "[2023-07-11 14:56:49,157] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", + "[2023-07-11 14:56:49,158] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", + "[2023-07-11 14:56:49,159] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", + "[2023-07-11 14:56:49,159] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", + "[2023-07-11 14:56:49,160] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", + "[2023-07-11 14:56:49,160] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", + "[2023-07-11 14:56:49,161] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", + "[2023-07-11 14:56:49,162] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", + "[2023-07-11 14:56:49,162] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", + "[2023-07-11 14:56:49,163] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", + "[2023-07-11 14:56:49,163] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", + "[2023-07-11 14:56:49,164] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", + "[2023-07-11 14:56:49,165] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", + "[2023-07-11 14:56:49,165] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", + "[2023-07-11 14:56:49,166] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", + "[2023-07-11 14:56:49,166] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", + "[2023-07-11 14:56:49,167] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", + "[2023-07-11 14:56:49,167] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", + "[2023-07-11 14:56:49,168] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", + "[2023-07-11 14:56:49,169] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", + "[2023-07-11 14:56:49,169] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", + "[2023-07-11 14:56:49,170] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", + "[2023-07-11 14:56:49,170] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", + "[2023-07-11 14:56:49,171] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", + "[2023-07-11 14:56:49,171] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", + "[2023-07-11 14:56:49,172] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", + "[2023-07-11 14:56:49,173] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", + "[2023-07-11 14:56:49,173] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", + "[2023-07-11 14:56:49,174] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", + "[2023-07-11 14:56:49,174] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", + "[2023-07-11 14:56:49,175] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", + "[2023-07-11 14:56:49,176] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", + "[2023-07-11 14:56:49,176] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", + "[2023-07-11 14:56:49,177] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", + "[2023-07-11 14:56:49,177] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", + "[2023-07-11 14:56:49,178] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", + "[2023-07-11 14:56:49,179] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", + "[2023-07-11 14:56:49,179] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", + "[2023-07-11 14:56:49,180] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", + "[2023-07-11 14:56:49,180] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", + "[2023-07-11 14:56:49,181] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", + "[2023-07-11 14:56:49,181] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", + "[2023-07-11 14:56:49,182] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", + "[2023-07-11 14:56:49,183] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", + "[2023-07-11 14:56:49,183] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", + "[2023-07-11 14:56:49,184] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", + "[2023-07-11 14:56:49,184] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", + "[2023-07-11 14:56:49,185] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", + "[2023-07-11 14:56:49,186] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", + "[2023-07-11 14:56:49,186] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", + "[2023-07-11 14:56:49,187] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", + "[2023-07-11 14:56:49,187] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", + "[2023-07-11 14:56:49,188] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", + "[2023-07-11 14:56:49,188] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", + "[2023-07-11 14:56:49,189] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", + "[2023-07-11 14:56:49,190] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", + "[2023-07-11 14:56:49,190] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", + "[2023-07-11 14:56:49,191] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", + "[2023-07-11 14:56:49,191] [INFO] (highdicom.seg.sop) - add plane #87 for segment #1\n", + "[2023-07-11 14:56:49,192] [INFO] (highdicom.seg.sop) - add plane #88 for segment #1\n", + "[2023-07-11 14:56:49,232] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 14:56:49,232] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", + "[2023-07-11 14:56:49,232] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 14:56:49,232] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", + "[2023-07-11 14:56:49,232] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", + "[2023-07-11 14:56:49,233] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 14:56:49,233] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", + "[2023-07-11 14:56:49,233] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", + "[2023-07-11 14:56:49,233] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", "\u001b[34mDone performing execution of operator DICOMSegmentationWriterOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator ClaraVizOperator\u001b[39m\n", - "\u001b[32mExecuting operator ClaraVizOperator \u001b[33m(Process ID: 212097, Operator ID: 73012aa1-9c14-4675-8607-4163b3d92a53)\u001b[39m\n", + "\u001b[32mExecuting operator ClaraVizOperator \u001b[33m(Process ID: 413147, Operator ID: a14e8177-d533-41d8-a5fc-d403b3157c52)\u001b[39m\n", "Box(children=(Widget(), VBox(children=(interactive(children=(Dropdown(description='View mode', index=2, options=(('Cinematic', 'CINEMATIC'), ('Slice', 'SLICE'), ('Slice Segmentation', 'SLICE_SEGMENTATION')), value='SLICE_SEGMENTATION'), Output()), _dom_classes=('widget-interact',)), interactive(children=(Dropdown(description='Camera', options=('Top', 'Right', 'Front'), value='Top'), Output()), _dom_classes=('widget-interact',))))))\n", "\u001b[34mDone performing execution of operator ClaraVizOperator\n", "\u001b[39m\n" @@ -1524,31 +1513,31 @@ "output_type": "stream", "text": [ "\u001b[34mGoing to initiate execution of operator DICOMDataLoaderOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 212198, Operator ID: 5f3923bb-90aa-4b1b-9a44-1a6d7dbbb7df)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 413236, Operator ID: 1f32d78a-0de3-4ea2-ba37-3dbfc652548c)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMDataLoaderOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesSelectorOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 212198, Operator ID: e0e3e8b2-d3b7-48dc-a664-a9a0302069d4)\u001b[39m\n", - "[2023-07-07 14:37:20,893] [INFO] (root) - Finding series for Selection named: CT Series\n", - "[2023-07-07 14:37:20,893] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", + "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 413236, Operator ID: 5b52494e-7aff-4317-9cb2-a668f94e317e)\u001b[39m\n", + "[2023-07-11 14:56:59,834] [INFO] (root) - Finding series for Selection named: CT Series\n", + "[2023-07-11 14:56:59,835] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", " # of series: 1\n", - "[2023-07-07 14:37:20,894] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", - "[2023-07-07 14:37:20,894] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", - "[2023-07-07 14:37:20,894] [INFO] (root) - Series attribute Modality value: CT\n", - "[2023-07-07 14:37:20,894] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 14:37:20,894] [INFO] (root) - On attribute: 'ImageType' to match value: '['PRIMARY', 'ORIGINAL']'\n", - "[2023-07-07 14:37:20,894] [INFO] (root) - Series attribute ImageType value: None\n", - "[2023-07-07 14:37:20,894] [INFO] (root) - On attribute: 'PhotometricInterpretation' to match value: 'MONOCHROME2'\n", - "[2023-07-07 14:37:20,894] [INFO] (root) - Series attribute PhotometricInterpretation value: None\n", - "[2023-07-07 14:37:20,894] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "[2023-07-11 14:56:59,835] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "[2023-07-11 14:56:59,835] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", + "[2023-07-11 14:56:59,835] [INFO] (root) - Series attribute Modality value: CT\n", + "[2023-07-11 14:56:59,835] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 14:56:59,835] [INFO] (root) - On attribute: 'ImageType' to match value: ['PRIMARY', 'ORIGINAL']\n", + "[2023-07-11 14:56:59,835] [INFO] (root) - Series attribute ImageType value: None\n", + "[2023-07-11 14:56:59,835] [INFO] (root) - On attribute: 'PhotometricInterpretation' to match value: 'MONOCHROME2'\n", + "[2023-07-11 14:56:59,835] [INFO] (root) - Series attribute PhotometricInterpretation value: None\n", + "[2023-07-11 14:56:59,835] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", "\u001b[34mDone performing execution of operator DICOMSeriesSelectorOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesToVolumeOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 212198, Operator ID: 1ebcdad0-e514-4af6-94e8-8b3df0a861be)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 413236, Operator ID: d7807301-265d-45ce-835a-3f65fe59aa19)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMSeriesToVolumeOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator SpleenSegOperator\u001b[39m\n", - "\u001b[32mExecuting operator SpleenSegOperator \u001b[33m(Process ID: 212198, Operator ID: 0be937f3-4420-4dbc-bb60-9e20311a13e9)\u001b[39m\n", + "\u001b[32mExecuting operator SpleenSegOperator \u001b[33m(Process ID: 413236, Operator ID: 120b0400-8eaf-4300-8876-555c2124ebb0)\u001b[39m\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:321: FutureWarning: monai.transforms.io.dictionary LoadImaged.__init__:image_only: Current default value of argument `image_only=False` has been deprecated since version 1.1. It will be changed to `image_only=True` in version 1.3.\n", " warn_deprecated(argname, msg, warning_category)\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:321: FutureWarning: monai.transforms.io.dictionary SaveImaged.__init__:resample: Current default value of argument `resample=True` has been deprecated since version 1.1. It will be changed to `resample=False` in version 1.3.\n", @@ -1582,122 +1571,122 @@ "StudyDescription: CT ABDOMEN W IV CONTRAST, type \n", "AccessionNumber: 5471978513296937, type \n", "selection_name: CT Series, type \n", - "2023-07-07 14:37:26,564 INFO image_writer.py:197 - writing: /home/mqin/src/monai-deploy-app-sdk/notebooks/tutorials/output/prediction_output/1.3.6.1.4.1.14519.5.2.1.7085.2626/1.3.6.1.4.1.14519.5.2.1.7085.2626_seg.nii.gz\n", + "2023-07-11 14:57:05,302 INFO image_writer.py:197 - writing: /home/mqin/src/monai-deploy-app-sdk/notebooks/tutorials/output/prediction_output/1.3.6.1.4.1.14519.5.2.1.7085.2626/1.3.6.1.4.1.14519.5.2.1.7085.2626_seg.nii.gz\n", "Output Seg image numpy array shaped: (204, 512, 512)\n", "Output Seg image pixel max value: 1\n", "Output Seg image pixel min value: 0\n", "\u001b[34mDone performing execution of operator SpleenSegOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSegmentationWriterOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 212198, Operator ID: 39ea1b01-5e3b-4525-aec0-6e7fb80bbfa8)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 413236, Operator ID: 6dd0364a-a090-492b-8ab8-9c9015a8782a)\u001b[39m\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/highdicom/valuerep.py:54: UserWarning: The string \"C3N-00198\" is unlikely to represent the intended person name since it contains only a single component. Construct a person name according to the format in described in http://dicom.nema.org/dicom/2013/output/chtml/part05/sect_6.2.html#sect_6.2.1.2, or, in pydicom 2.2.0 or later, use the pydicom.valuerep.PersonName.from_named_components() method to construct the person name correctly. If a single-component name is really intended, add a trailing caret character to disambiguate the name.\n", " warnings.warn(\n", - "[2023-07-07 14:37:31,159] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", + "[2023-07-11 14:57:09,282] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR UL.\n", " warnings.warn(msg)\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR US.\n", " warnings.warn(msg)\n", - "[2023-07-07 14:37:31,160] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", - "[2023-07-07 14:37:31,161] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", - "[2023-07-07 14:37:31,162] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", - "[2023-07-07 14:37:31,162] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", - "[2023-07-07 14:37:31,163] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", - "[2023-07-07 14:37:31,163] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", - "[2023-07-07 14:37:31,164] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", - "[2023-07-07 14:37:31,165] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", - "[2023-07-07 14:37:31,165] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", - "[2023-07-07 14:37:31,166] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", - "[2023-07-07 14:37:31,166] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", - "[2023-07-07 14:37:31,167] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", - "[2023-07-07 14:37:31,167] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", - "[2023-07-07 14:37:31,168] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", - "[2023-07-07 14:37:31,169] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", - "[2023-07-07 14:37:31,169] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", - "[2023-07-07 14:37:31,170] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", - "[2023-07-07 14:37:31,171] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", - "[2023-07-07 14:37:31,172] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", - "[2023-07-07 14:37:31,172] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", - "[2023-07-07 14:37:31,173] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", - "[2023-07-07 14:37:31,173] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", - "[2023-07-07 14:37:31,174] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", - "[2023-07-07 14:37:31,175] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", - "[2023-07-07 14:37:31,175] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", - "[2023-07-07 14:37:31,176] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", - "[2023-07-07 14:37:31,176] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", - "[2023-07-07 14:37:31,177] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", - "[2023-07-07 14:37:31,177] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", - "[2023-07-07 14:37:31,178] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", - "[2023-07-07 14:37:31,179] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", - "[2023-07-07 14:37:31,179] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", - "[2023-07-07 14:37:31,180] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", - "[2023-07-07 14:37:31,181] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", - "[2023-07-07 14:37:31,182] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", - "[2023-07-07 14:37:31,182] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", - "[2023-07-07 14:37:31,183] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", - "[2023-07-07 14:37:31,183] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", - "[2023-07-07 14:37:31,184] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", - "[2023-07-07 14:37:31,184] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", - "[2023-07-07 14:37:31,185] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", - "[2023-07-07 14:37:31,186] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", - "[2023-07-07 14:37:31,186] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", - "[2023-07-07 14:37:31,187] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", - "[2023-07-07 14:37:31,187] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", - "[2023-07-07 14:37:31,188] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", - "[2023-07-07 14:37:31,189] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", - "[2023-07-07 14:37:31,189] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", - "[2023-07-07 14:37:31,190] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", - "[2023-07-07 14:37:31,190] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", - "[2023-07-07 14:37:31,191] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", - "[2023-07-07 14:37:31,191] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", - "[2023-07-07 14:37:31,192] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", - "[2023-07-07 14:37:31,193] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", - "[2023-07-07 14:37:31,193] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", - "[2023-07-07 14:37:31,194] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", - "[2023-07-07 14:37:31,194] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", - "[2023-07-07 14:37:31,195] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", - "[2023-07-07 14:37:31,196] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", - "[2023-07-07 14:37:31,196] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", - "[2023-07-07 14:37:31,197] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", - "[2023-07-07 14:37:31,197] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", - "[2023-07-07 14:37:31,198] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", - "[2023-07-07 14:37:31,198] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", - "[2023-07-07 14:37:31,199] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", - "[2023-07-07 14:37:31,200] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", - "[2023-07-07 14:37:31,200] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", - "[2023-07-07 14:37:31,201] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", - "[2023-07-07 14:37:31,201] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", - "[2023-07-07 14:37:31,202] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", - "[2023-07-07 14:37:31,203] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", - "[2023-07-07 14:37:31,203] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", - "[2023-07-07 14:37:31,204] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", - "[2023-07-07 14:37:31,204] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", - "[2023-07-07 14:37:31,205] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", - "[2023-07-07 14:37:31,206] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", - "[2023-07-07 14:37:31,206] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", - "[2023-07-07 14:37:31,207] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", - "[2023-07-07 14:37:31,207] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", - "[2023-07-07 14:37:31,208] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", - "[2023-07-07 14:37:31,208] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", - "[2023-07-07 14:37:31,209] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", - "[2023-07-07 14:37:31,210] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", - "[2023-07-07 14:37:31,210] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", - "[2023-07-07 14:37:31,211] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", - "[2023-07-07 14:37:31,212] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", - "[2023-07-07 14:37:31,212] [INFO] (highdicom.seg.sop) - add plane #87 for segment #1\n", - "[2023-07-07 14:37:31,213] [INFO] (highdicom.seg.sop) - add plane #88 for segment #1\n", - "[2023-07-07 14:37:31,254] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:37:31,254] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", - "[2023-07-07 14:37:31,255] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:37:31,255] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", - "[2023-07-07 14:37:31,255] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", - "[2023-07-07 14:37:31,255] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:37:31,255] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", - "[2023-07-07 14:37:31,255] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", - "[2023-07-07 14:37:31,256] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", + "[2023-07-11 14:57:09,283] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", + "[2023-07-11 14:57:09,284] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", + "[2023-07-11 14:57:09,285] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", + "[2023-07-11 14:57:09,285] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", + "[2023-07-11 14:57:09,286] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", + "[2023-07-11 14:57:09,286] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", + "[2023-07-11 14:57:09,287] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", + "[2023-07-11 14:57:09,288] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", + "[2023-07-11 14:57:09,288] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", + "[2023-07-11 14:57:09,289] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", + "[2023-07-11 14:57:09,289] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", + "[2023-07-11 14:57:09,290] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", + "[2023-07-11 14:57:09,290] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", + "[2023-07-11 14:57:09,291] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", + "[2023-07-11 14:57:09,292] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", + "[2023-07-11 14:57:09,292] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", + "[2023-07-11 14:57:09,293] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", + "[2023-07-11 14:57:09,293] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", + "[2023-07-11 14:57:09,294] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", + "[2023-07-11 14:57:09,294] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", + "[2023-07-11 14:57:09,295] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", + "[2023-07-11 14:57:09,296] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", + "[2023-07-11 14:57:09,296] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", + "[2023-07-11 14:57:09,297] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", + "[2023-07-11 14:57:09,297] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", + "[2023-07-11 14:57:09,298] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", + "[2023-07-11 14:57:09,299] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", + "[2023-07-11 14:57:09,300] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", + "[2023-07-11 14:57:09,300] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", + "[2023-07-11 14:57:09,301] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", + "[2023-07-11 14:57:09,301] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", + "[2023-07-11 14:57:09,302] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", + "[2023-07-11 14:57:09,302] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", + "[2023-07-11 14:57:09,303] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", + "[2023-07-11 14:57:09,304] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", + "[2023-07-11 14:57:09,304] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", + "[2023-07-11 14:57:09,305] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", + "[2023-07-11 14:57:09,305] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", + "[2023-07-11 14:57:09,306] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", + "[2023-07-11 14:57:09,306] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", + "[2023-07-11 14:57:09,307] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", + "[2023-07-11 14:57:09,308] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", + "[2023-07-11 14:57:09,308] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", + "[2023-07-11 14:57:09,309] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", + "[2023-07-11 14:57:09,309] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", + "[2023-07-11 14:57:09,310] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", + "[2023-07-11 14:57:09,311] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", + "[2023-07-11 14:57:09,311] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", + "[2023-07-11 14:57:09,312] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", + "[2023-07-11 14:57:09,312] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", + "[2023-07-11 14:57:09,313] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", + "[2023-07-11 14:57:09,313] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", + "[2023-07-11 14:57:09,314] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", + "[2023-07-11 14:57:09,315] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", + "[2023-07-11 14:57:09,315] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", + "[2023-07-11 14:57:09,316] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", + "[2023-07-11 14:57:09,316] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", + "[2023-07-11 14:57:09,317] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", + "[2023-07-11 14:57:09,318] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", + "[2023-07-11 14:57:09,318] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", + "[2023-07-11 14:57:09,319] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", + "[2023-07-11 14:57:09,319] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", + "[2023-07-11 14:57:09,320] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", + "[2023-07-11 14:57:09,320] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", + "[2023-07-11 14:57:09,321] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", + "[2023-07-11 14:57:09,322] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", + "[2023-07-11 14:57:09,322] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", + "[2023-07-11 14:57:09,323] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", + "[2023-07-11 14:57:09,323] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", + "[2023-07-11 14:57:09,324] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", + "[2023-07-11 14:57:09,325] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", + "[2023-07-11 14:57:09,325] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", + "[2023-07-11 14:57:09,326] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", + "[2023-07-11 14:57:09,326] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", + "[2023-07-11 14:57:09,327] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", + "[2023-07-11 14:57:09,328] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", + "[2023-07-11 14:57:09,328] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", + "[2023-07-11 14:57:09,329] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", + "[2023-07-11 14:57:09,329] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", + "[2023-07-11 14:57:09,330] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", + "[2023-07-11 14:57:09,330] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", + "[2023-07-11 14:57:09,331] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", + "[2023-07-11 14:57:09,332] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", + "[2023-07-11 14:57:09,332] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", + "[2023-07-11 14:57:09,333] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", + "[2023-07-11 14:57:09,333] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", + "[2023-07-11 14:57:09,334] [INFO] (highdicom.seg.sop) - add plane #87 for segment #1\n", + "[2023-07-11 14:57:09,335] [INFO] (highdicom.seg.sop) - add plane #88 for segment #1\n", + "[2023-07-11 14:57:09,376] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 14:57:09,376] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", + "[2023-07-11 14:57:09,376] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 14:57:09,376] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", + "[2023-07-11 14:57:09,377] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", + "[2023-07-11 14:57:09,377] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 14:57:09,377] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", + "[2023-07-11 14:57:09,377] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", + "[2023-07-11 14:57:09,377] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", "\u001b[34mDone performing execution of operator DICOMSegmentationWriterOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator ClaraVizOperator\u001b[39m\n", - "\u001b[32mExecuting operator ClaraVizOperator \u001b[33m(Process ID: 212198, Operator ID: 428c508d-6859-4016-abbc-5067e06085bb)\u001b[39m\n", + "\u001b[32mExecuting operator ClaraVizOperator \u001b[33m(Process ID: 413236, Operator ID: ad315ead-b11e-4477-93ff-81120d104b1b)\u001b[39m\n", "Box(children=(Widget(), VBox(children=(interactive(children=(Dropdown(description='View mode', index=2, options=(('Cinematic', 'CINEMATIC'), ('Slice', 'SLICE'), ('Slice Segmentation', 'SLICE_SEGMENTATION')), value='SLICE_SEGMENTATION'), Output()), _dom_classes=('widget-interact',)), interactive(children=(Dropdown(description='Camera', options=('Top', 'Right', 'Front'), value='Top'), Output()), _dom_classes=('widget-interact',))))))\n", "\u001b[34mDone performing execution of operator ClaraVizOperator\n", "\u001b[39m\n" @@ -1719,11 +1708,10 @@ "name": "stdout", "output_type": "stream", "text": [ - "1.2.826.0.1.3680043.10.511.3.12403356695986279398773592264252062.dcm\n", - "1.2.826.0.1.3680043.10.511.3.14734608308230455679232331958990492.dcm\n", - "1.2.826.0.1.3680043.10.511.3.42464329218396245755572863452048923.dcm\n", - "1.2.826.0.1.3680043.10.511.3.54834524380663968450455694978084742.dcm\n", - "1.2.826.0.1.3680043.10.511.3.86145674630737123945718629756263691.dcm\n", + "1.2.826.0.1.3680043.10.511.3.12812951638692437876665082959029563.dcm\n", + "1.2.826.0.1.3680043.10.511.3.28789282190029673997417363543498384.dcm\n", + "1.2.826.0.1.3680043.10.511.3.66947099504697068175759295050376786.dcm\n", + "1.2.826.0.1.3680043.10.511.3.81049388184157546497351662098599841.dcm\n", "prediction_output\n" ] } diff --git a/notebooks/tutorials/06_monai_bundle_app.ipynb b/notebooks/tutorials/06_monai_bundle_app.ipynb index 908b782d..9ef7d77c 100644 --- a/notebooks/tutorials/06_monai_bundle_app.ipynb +++ b/notebooks/tutorials/06_monai_bundle_app.ipynb @@ -106,7 +106,6 @@ "!python -c \"import pydicom\" || pip install -q \"pydicom>=1.4.2\"\n", "!python -c \"import highdicom\" || pip install -q \"highdicom>=0.18.2\"\n", "!python -c \"import SimpleITK\" || pip install -q \"SimpleITK>=2.0.0\"\n", - "!python -c \"import typeguard\" || pip install -q \"typeguard~=2.12.1\"\n", "\n", "# Install MONAI Deploy App SDK package\n", "!python -c \"import monai.deploy\" || pip install --upgrade -q \"monai-deploy-app-sdk\"" @@ -142,16 +141,16 @@ "Requirement already satisfied: tqdm in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from gdown) (4.65.0)\n", "Requirement already satisfied: beautifulsoup4 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from gdown) (4.12.2)\n", "Requirement already satisfied: soupsieve>1.2 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from beautifulsoup4->gdown) (2.4.1)\n", - "Requirement already satisfied: charset-normalizer<4,>=2 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (3.1.0)\n", + "Requirement already satisfied: charset-normalizer<4,>=2 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (3.2.0)\n", "Requirement already satisfied: idna<4,>=2.5 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (3.4)\n", "Requirement already satisfied: urllib3<3,>=1.21.1 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (2.0.3)\n", "Requirement already satisfied: certifi>=2017.4.17 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (2023.5.7)\n", "Requirement already satisfied: PySocks!=1.5.7,>=1.5.6 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (1.7.1)\n", "Downloading...\n", "From (uriginal): https://drive.google.com/uc?id=1Uds8mEvdGNYUuvFpTtCQ8gNU97bAPCaQ\n", - "From (redirected): https://drive.google.com/uc?id=1Uds8mEvdGNYUuvFpTtCQ8gNU97bAPCaQ&confirm=t&uuid=a069a8a7-2618-4145-86ba-82ba08b6fe8c\n", + "From (redirected): https://drive.google.com/uc?id=1Uds8mEvdGNYUuvFpTtCQ8gNU97bAPCaQ&confirm=t&uuid=ac502886-841e-45cf-b5f1-6d287c49d4c2\n", "To: /home/mqin/src/monai-deploy-app-sdk/notebooks/tutorials/ai_spleen_seg_bundle_data.zip\n", - "100%|██████████████████████████████████████| 79.4M/79.4M [00:00<00:00, 81.9MB/s]\n", + "100%|██████████████████████████████████████| 79.4M/79.4M [00:01<00:00, 55.5MB/s]\n", "Archive: ai_spleen_seg_bundle_data.zip\n", " inflating: dcm/1-001.dcm \n", " inflating: dcm/1-002.dcm \n", @@ -533,16 +532,16 @@ "output_type": "stream", "text": [ "\u001b[34mGoing to initiate execution of operator DICOMDataLoaderOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 212421, Operator ID: f97e1484-fd8d-4929-ad89-b46f850dedaf)\u001b[39m\n" + "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 413535, Operator ID: 20cb5516-0162-4062-b0ca-43b6be729030)\u001b[39m\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "[2023-07-07 14:44:58,641] [WARNING] (root) - No selection rules given; select all series.\n", - "[2023-07-07 14:44:58,642] [INFO] (root) - Working on study, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", - "[2023-07-07 14:44:58,642] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n" + "[2023-07-11 14:59:57,956] [WARNING] (root) - No selection rules given; select all series.\n", + "[2023-07-11 14:59:57,957] [INFO] (root) - Working on study, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", + "[2023-07-11 14:59:57,957] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n" ] }, { @@ -552,17 +551,17 @@ "\u001b[34mDone performing execution of operator DICOMDataLoaderOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesSelectorOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 212421, Operator ID: 2be0a8b9-76fc-4a0c-af94-0798b2c1a683)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 413535, Operator ID: 8a9d504f-a685-4053-a0f6-479701b3682d)\u001b[39m\n", "Working on study, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", "Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", "\u001b[34mDone performing execution of operator DICOMSeriesSelectorOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesToVolumeOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 212421, Operator ID: 7a2abb10-bcd2-4371-b7da-96fd354cbc95)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 413535, Operator ID: 566dca22-7ee3-4aa3-9a60-576a072330e3)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMSeriesToVolumeOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator MonaiBundleInferenceOperator\u001b[39m\n", - "\u001b[32mExecuting operator MonaiBundleInferenceOperator \u001b[33m(Process ID: 212421, Operator ID: 695a8fed-ebd8-4fd2-af78-9d0c3fb166ec)\u001b[39m\n" + "\u001b[32mExecuting operator MonaiBundleInferenceOperator \u001b[33m(Process ID: 413535, Operator ID: 3ead3a6e-a082-44cd-aaa0-369fc4d10024)\u001b[39m\n" ] }, { @@ -582,7 +581,7 @@ "\u001b[34mDone performing execution of operator MonaiBundleInferenceOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSegmentationWriterOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 212421, Operator ID: b9bc37ff-319a-49cf-83de-a54e88a4c24e)\u001b[39m\n" + "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 413535, Operator ID: 87c8d22b-cf71-46d9-8b4a-b09fd766ba73)\u001b[39m\n" ] }, { @@ -591,107 +590,107 @@ "text": [ "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/highdicom/valuerep.py:54: UserWarning: The string \"C3N-00198\" is unlikely to represent the intended person name since it contains only a single component. Construct a person name according to the format in described in http://dicom.nema.org/dicom/2013/output/chtml/part05/sect_6.2.html#sect_6.2.1.2, or, in pydicom 2.2.0 or later, use the pydicom.valuerep.PersonName.from_named_components() method to construct the person name correctly. If a single-component name is really intended, add a trailing caret character to disambiguate the name.\n", " warnings.warn(\n", - "[2023-07-07 14:45:11,670] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", + "[2023-07-11 15:00:06,925] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR UL.\n", " warnings.warn(msg)\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR US.\n", " warnings.warn(msg)\n", - "[2023-07-07 14:45:11,673] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", - "[2023-07-07 14:45:11,675] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", - "[2023-07-07 14:45:11,676] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", - "[2023-07-07 14:45:11,677] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", - "[2023-07-07 14:45:11,678] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", - "[2023-07-07 14:45:11,680] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", - "[2023-07-07 14:45:11,681] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", - "[2023-07-07 14:45:11,682] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", - "[2023-07-07 14:45:11,683] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", - "[2023-07-07 14:45:11,685] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", - "[2023-07-07 14:45:11,686] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", - "[2023-07-07 14:45:11,687] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", - "[2023-07-07 14:45:11,689] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", - "[2023-07-07 14:45:11,690] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", - "[2023-07-07 14:45:11,691] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", - "[2023-07-07 14:45:11,692] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", - "[2023-07-07 14:45:11,694] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", - "[2023-07-07 14:45:11,695] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", - "[2023-07-07 14:45:11,696] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", - "[2023-07-07 14:45:11,697] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", - "[2023-07-07 14:45:11,699] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", - "[2023-07-07 14:45:11,700] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", - "[2023-07-07 14:45:11,701] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", - "[2023-07-07 14:45:11,703] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", - "[2023-07-07 14:45:11,704] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", - "[2023-07-07 14:45:11,705] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", - "[2023-07-07 14:45:11,707] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", - "[2023-07-07 14:45:11,708] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", - "[2023-07-07 14:45:11,709] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", - "[2023-07-07 14:45:11,711] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", - "[2023-07-07 14:45:11,712] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", - "[2023-07-07 14:45:11,714] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", - "[2023-07-07 14:45:11,715] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", - "[2023-07-07 14:45:11,716] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", - "[2023-07-07 14:45:11,718] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", - "[2023-07-07 14:45:11,719] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", - "[2023-07-07 14:45:11,721] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", - "[2023-07-07 14:45:11,722] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", - "[2023-07-07 14:45:11,724] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", - "[2023-07-07 14:45:11,725] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", - "[2023-07-07 14:45:11,727] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", - "[2023-07-07 14:45:11,728] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", - "[2023-07-07 14:45:11,730] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", - "[2023-07-07 14:45:11,731] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", - "[2023-07-07 14:45:11,733] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", - "[2023-07-07 14:45:11,734] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", - "[2023-07-07 14:45:11,736] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", - "[2023-07-07 14:45:11,738] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", - "[2023-07-07 14:45:11,739] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", - "[2023-07-07 14:45:11,741] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", - "[2023-07-07 14:45:11,742] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", - "[2023-07-07 14:45:11,744] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", - "[2023-07-07 14:45:11,746] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", - "[2023-07-07 14:45:11,747] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", - "[2023-07-07 14:45:11,749] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", - "[2023-07-07 14:45:11,750] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", - "[2023-07-07 14:45:11,752] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", - "[2023-07-07 14:45:11,754] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", - "[2023-07-07 14:45:11,755] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", - "[2023-07-07 14:45:11,757] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", - "[2023-07-07 14:45:11,759] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", - "[2023-07-07 14:45:11,761] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", - "[2023-07-07 14:45:11,763] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", - "[2023-07-07 14:45:11,764] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", - "[2023-07-07 14:45:11,766] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", - "[2023-07-07 14:45:11,768] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", - "[2023-07-07 14:45:11,769] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", - "[2023-07-07 14:45:11,771] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", - "[2023-07-07 14:45:11,772] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", - "[2023-07-07 14:45:11,773] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", - "[2023-07-07 14:45:11,775] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", - "[2023-07-07 14:45:11,777] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", - "[2023-07-07 14:45:11,778] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", - "[2023-07-07 14:45:11,780] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", - "[2023-07-07 14:45:11,781] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", - "[2023-07-07 14:45:11,783] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", - "[2023-07-07 14:45:11,784] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", - "[2023-07-07 14:45:11,786] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", - "[2023-07-07 14:45:11,788] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", - "[2023-07-07 14:45:11,789] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", - "[2023-07-07 14:45:11,791] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", - "[2023-07-07 14:45:11,793] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", - "[2023-07-07 14:45:11,794] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", - "[2023-07-07 14:45:11,796] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", - "[2023-07-07 14:45:11,798] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", - "[2023-07-07 14:45:11,800] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", - "[2023-07-07 14:45:11,848] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:45:11,849] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", - "[2023-07-07 14:45:11,850] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:45:11,850] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", - "[2023-07-07 14:45:11,851] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", - "[2023-07-07 14:45:11,852] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:45:11,852] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", - "[2023-07-07 14:45:11,853] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", - "[2023-07-07 14:45:11,854] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", - "[2023-07-07 14:45:11,945] [INFO] (__main__.AISpleenSegApp) - End run\n" + "[2023-07-11 15:00:06,928] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", + "[2023-07-11 15:00:06,930] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", + "[2023-07-11 15:00:06,931] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", + "[2023-07-11 15:00:06,932] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", + "[2023-07-11 15:00:06,933] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", + "[2023-07-11 15:00:06,935] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", + "[2023-07-11 15:00:06,936] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", + "[2023-07-11 15:00:06,937] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", + "[2023-07-11 15:00:06,938] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", + "[2023-07-11 15:00:06,939] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", + "[2023-07-11 15:00:06,941] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", + "[2023-07-11 15:00:06,942] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", + "[2023-07-11 15:00:06,943] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", + "[2023-07-11 15:00:06,944] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", + "[2023-07-11 15:00:06,946] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", + "[2023-07-11 15:00:06,947] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", + "[2023-07-11 15:00:06,948] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", + "[2023-07-11 15:00:06,949] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", + "[2023-07-11 15:00:06,950] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", + "[2023-07-11 15:00:06,952] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", + "[2023-07-11 15:00:06,953] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", + "[2023-07-11 15:00:06,954] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", + "[2023-07-11 15:00:06,956] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", + "[2023-07-11 15:00:06,957] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", + "[2023-07-11 15:00:06,958] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", + "[2023-07-11 15:00:06,959] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", + "[2023-07-11 15:00:06,961] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", + "[2023-07-11 15:00:06,962] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", + "[2023-07-11 15:00:06,963] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", + "[2023-07-11 15:00:06,965] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", + "[2023-07-11 15:00:06,967] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", + "[2023-07-11 15:00:06,968] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", + "[2023-07-11 15:00:06,969] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", + "[2023-07-11 15:00:06,971] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", + "[2023-07-11 15:00:06,972] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", + "[2023-07-11 15:00:06,974] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", + "[2023-07-11 15:00:06,975] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", + "[2023-07-11 15:00:06,976] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", + "[2023-07-11 15:00:06,978] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", + "[2023-07-11 15:00:06,979] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", + "[2023-07-11 15:00:06,980] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", + "[2023-07-11 15:00:06,982] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", + "[2023-07-11 15:00:06,983] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", + "[2023-07-11 15:00:06,985] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", + "[2023-07-11 15:00:06,986] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", + "[2023-07-11 15:00:06,988] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", + "[2023-07-11 15:00:06,989] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", + "[2023-07-11 15:00:06,991] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", + "[2023-07-11 15:00:06,992] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", + "[2023-07-11 15:00:06,994] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", + "[2023-07-11 15:00:06,995] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", + "[2023-07-11 15:00:06,997] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", + "[2023-07-11 15:00:06,998] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", + "[2023-07-11 15:00:07,000] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", + "[2023-07-11 15:00:07,001] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", + "[2023-07-11 15:00:07,004] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", + "[2023-07-11 15:00:07,005] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", + "[2023-07-11 15:00:07,007] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", + "[2023-07-11 15:00:07,008] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", + "[2023-07-11 15:00:07,010] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", + "[2023-07-11 15:00:07,012] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", + "[2023-07-11 15:00:07,013] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", + "[2023-07-11 15:00:07,015] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", + "[2023-07-11 15:00:07,016] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", + "[2023-07-11 15:00:07,018] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", + "[2023-07-11 15:00:07,019] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", + "[2023-07-11 15:00:07,021] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", + "[2023-07-11 15:00:07,022] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", + "[2023-07-11 15:00:07,024] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", + "[2023-07-11 15:00:07,026] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", + "[2023-07-11 15:00:07,027] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", + "[2023-07-11 15:00:07,030] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", + "[2023-07-11 15:00:07,043] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", + "[2023-07-11 15:00:07,046] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", + "[2023-07-11 15:00:07,048] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", + "[2023-07-11 15:00:07,051] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", + "[2023-07-11 15:00:07,054] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", + "[2023-07-11 15:00:07,056] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", + "[2023-07-11 15:00:07,058] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", + "[2023-07-11 15:00:07,061] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", + "[2023-07-11 15:00:07,063] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", + "[2023-07-11 15:00:07,065] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", + "[2023-07-11 15:00:07,067] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", + "[2023-07-11 15:00:07,070] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", + "[2023-07-11 15:00:07,072] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", + "[2023-07-11 15:00:07,074] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", + "[2023-07-11 15:00:07,129] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:00:07,130] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", + "[2023-07-11 15:00:07,131] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:00:07,131] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", + "[2023-07-11 15:00:07,132] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", + "[2023-07-11 15:00:07,133] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:00:07,133] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", + "[2023-07-11 15:00:07,134] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", + "[2023-07-11 15:00:07,135] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", + "[2023-07-11 15:00:07,219] [INFO] (__main__.AISpleenSegApp) - End run\n" ] }, { @@ -967,37 +966,146 @@ "output_type": "stream", "text": [ "\u001b[34mGoing to initiate execution of operator DICOMDataLoaderOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 212728, Operator ID: 076f2215-4f7f-4754-86b7-911e98a9ea92)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 413831, Operator ID: 7ccb7af7-5913-45b6-93a8-30800295fdcd)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMDataLoaderOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesSelectorOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 212728, Operator ID: 67317f24-b73d-451c-a792-4d38bc726ecc)\u001b[39m\n", - "[2023-07-07 14:45:22,757] [INFO] (root) - Finding series for Selection named: CT Series\n", - "[2023-07-07 14:45:22,758] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", + "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 413831, Operator ID: a5f3f08e-7db0-418c-90c2-de519493651a)\u001b[39m\n", + "[2023-07-11 15:00:13,560] [INFO] (root) - Finding series for Selection named: CT Series\n", + "[2023-07-11 15:00:13,560] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", " # of series: 1\n", - "[2023-07-07 14:45:22,758] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", - "[2023-07-07 14:45:22,758] [INFO] (root) - On attribute: 'StudyDescription' to match value: '(.*?)'\n", - "[2023-07-07 14:45:22,758] [INFO] (root) - Series attribute StudyDescription value: CT ABDOMEN W IV CONTRAST\n", - "[2023-07-07 14:45:22,758] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 14:45:22,758] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", - "[2023-07-07 14:45:22,758] [INFO] (root) - Series attribute Modality value: CT\n", - "[2023-07-07 14:45:22,758] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 14:45:22,758] [INFO] (root) - On attribute: 'SeriesDescription' to match value: '(.*?)'\n", - "[2023-07-07 14:45:22,758] [INFO] (root) - Series attribute SeriesDescription value: ABD/PANC 3.0 B31f\n", - "[2023-07-07 14:45:22,758] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 14:45:22,758] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "[2023-07-11 15:00:13,560] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "[2023-07-11 15:00:13,560] [INFO] (root) - On attribute: 'StudyDescription' to match value: '(.*?)'\n", + "[2023-07-11 15:00:13,560] [INFO] (root) - Series attribute StudyDescription value: CT ABDOMEN W IV CONTRAST\n", + "[2023-07-11 15:00:13,561] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 15:00:13,561] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", + "[2023-07-11 15:00:13,561] [INFO] (root) - Series attribute Modality value: CT\n", + "[2023-07-11 15:00:13,561] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 15:00:13,561] [INFO] (root) - On attribute: 'SeriesDescription' to match value: '(.*?)'\n", + "[2023-07-11 15:00:13,561] [INFO] (root) - Series attribute SeriesDescription value: ABD/PANC 3.0 B31f\n", + "[2023-07-11 15:00:13,561] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 15:00:13,561] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", "\u001b[34mDone performing execution of operator DICOMSeriesSelectorOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesToVolumeOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 212728, Operator ID: 92150bc6-3e35-4348-98aa-29b9a435e47a)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 413831, Operator ID: 880779ab-24f3-47f4-8780-a025e07d573a)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMSeriesToVolumeOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator MonaiBundleInferenceOperator\u001b[39m\n", - "\u001b[32mExecuting operator MonaiBundleInferenceOperator \u001b[33m(Process ID: 212728, Operator ID: 65a958ff-1211-455c-aad8-99d678986b6f)\u001b[39m\n", + "\u001b[32mExecuting operator MonaiBundleInferenceOperator \u001b[33m(Process ID: 413831, Operator ID: 4fad978c-d507-45a0-ba4b-8ddf0efe1b70)\u001b[39m\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:321: FutureWarning: monai.transforms.io.dictionary LoadImaged.__init__:image_only: Current default value of argument `image_only=False` has been deprecated since version 1.1. It will be changed to `image_only=True` in version 1.3.\n", " warn_deprecated(argname, msg, warning_category)\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:321: FutureWarning: monai.transforms.io.dictionary SaveImaged.__init__:resample: Current default value of argument `resample=True` has been deprecated since version 1.1. It will be changed to `resample=False` in version 1.3.\n", - " warn_deprecated(argname, msg, warning_category)\n" + " warn_deprecated(argname, msg, warning_category)\n", + "\u001b[34mDone performing execution of operator MonaiBundleInferenceOperator\n", + "\u001b[39m\n", + "\u001b[34mGoing to initiate execution of operator DICOMSegmentationWriterOperator\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 413831, Operator ID: 6fe56299-8549-4504-a9a4-b829b60ac3cf)\u001b[39m\n", + "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/highdicom/valuerep.py:54: UserWarning: The string \"C3N-00198\" is unlikely to represent the intended person name since it contains only a single component. Construct a person name according to the format in described in http://dicom.nema.org/dicom/2013/output/chtml/part05/sect_6.2.html#sect_6.2.1.2, or, in pydicom 2.2.0 or later, use the pydicom.valuerep.PersonName.from_named_components() method to construct the person name correctly. If a single-component name is really intended, add a trailing caret character to disambiguate the name.\n", + " warnings.warn(\n", + "[2023-07-11 15:00:21,424] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", + "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR UL.\n", + " warnings.warn(msg)\n", + "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR US.\n", + " warnings.warn(msg)\n", + "[2023-07-11 15:00:21,426] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", + "[2023-07-11 15:00:21,426] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", + "[2023-07-11 15:00:21,427] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", + "[2023-07-11 15:00:21,428] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", + "[2023-07-11 15:00:21,428] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", + "[2023-07-11 15:00:21,429] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", + "[2023-07-11 15:00:21,430] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", + "[2023-07-11 15:00:21,431] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", + "[2023-07-11 15:00:21,431] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", + "[2023-07-11 15:00:21,432] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", + "[2023-07-11 15:00:21,432] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", + "[2023-07-11 15:00:21,433] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", + "[2023-07-11 15:00:21,434] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", + "[2023-07-11 15:00:21,434] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", + "[2023-07-11 15:00:21,435] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", + "[2023-07-11 15:00:21,435] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", + "[2023-07-11 15:00:21,436] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", + "[2023-07-11 15:00:21,436] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", + "[2023-07-11 15:00:21,437] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", + "[2023-07-11 15:00:21,438] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", + "[2023-07-11 15:00:21,438] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", + "[2023-07-11 15:00:21,439] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", + "[2023-07-11 15:00:21,439] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", + "[2023-07-11 15:00:21,440] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", + "[2023-07-11 15:00:21,440] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", + "[2023-07-11 15:00:21,441] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", + "[2023-07-11 15:00:21,442] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", + "[2023-07-11 15:00:21,442] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", + "[2023-07-11 15:00:21,443] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", + "[2023-07-11 15:00:21,443] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", + "[2023-07-11 15:00:21,444] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", + "[2023-07-11 15:00:21,445] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", + "[2023-07-11 15:00:21,445] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", + "[2023-07-11 15:00:21,446] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", + "[2023-07-11 15:00:21,446] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", + "[2023-07-11 15:00:21,447] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", + "[2023-07-11 15:00:21,447] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", + "[2023-07-11 15:00:21,448] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", + "[2023-07-11 15:00:21,449] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", + "[2023-07-11 15:00:21,449] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", + "[2023-07-11 15:00:21,450] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", + "[2023-07-11 15:00:21,450] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", + "[2023-07-11 15:00:21,451] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", + "[2023-07-11 15:00:21,451] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", + "[2023-07-11 15:00:21,452] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", + "[2023-07-11 15:00:21,453] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", + "[2023-07-11 15:00:21,453] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", + "[2023-07-11 15:00:21,454] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", + "[2023-07-11 15:00:21,454] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", + "[2023-07-11 15:00:21,455] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", + "[2023-07-11 15:00:21,455] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", + "[2023-07-11 15:00:21,456] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", + "[2023-07-11 15:00:21,457] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", + "[2023-07-11 15:00:21,457] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", + "[2023-07-11 15:00:21,458] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", + "[2023-07-11 15:00:21,458] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", + "[2023-07-11 15:00:21,459] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", + "[2023-07-11 15:00:21,460] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", + "[2023-07-11 15:00:21,460] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", + "[2023-07-11 15:00:21,461] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", + "[2023-07-11 15:00:21,461] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", + "[2023-07-11 15:00:21,462] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", + "[2023-07-11 15:00:21,462] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", + "[2023-07-11 15:00:21,463] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", + "[2023-07-11 15:00:21,464] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", + "[2023-07-11 15:00:21,464] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", + "[2023-07-11 15:00:21,465] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", + "[2023-07-11 15:00:21,465] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", + "[2023-07-11 15:00:21,466] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", + "[2023-07-11 15:00:21,466] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", + "[2023-07-11 15:00:21,467] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", + "[2023-07-11 15:00:21,468] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", + "[2023-07-11 15:00:21,468] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", + "[2023-07-11 15:00:21,469] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", + "[2023-07-11 15:00:21,469] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", + "[2023-07-11 15:00:21,470] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", + "[2023-07-11 15:00:21,471] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", + "[2023-07-11 15:00:21,472] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", + "[2023-07-11 15:00:21,472] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", + "[2023-07-11 15:00:21,473] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", + "[2023-07-11 15:00:21,473] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", + "[2023-07-11 15:00:21,474] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", + "[2023-07-11 15:00:21,475] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", + "[2023-07-11 15:00:21,475] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", + "[2023-07-11 15:00:21,476] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", + "[2023-07-11 15:00:21,476] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", + "[2023-07-11 15:00:21,517] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:00:21,517] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", + "[2023-07-11 15:00:21,517] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:00:21,517] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", + "[2023-07-11 15:00:21,517] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", + "[2023-07-11 15:00:21,517] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:00:21,517] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", + "[2023-07-11 15:00:21,518] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", + "[2023-07-11 15:00:21,518] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", + "\u001b[34mDone performing execution of operator DICOMSegmentationWriterOperator\n", + "\u001b[39m\n", + "[2023-07-11 15:00:21,594] [INFO] (app.AISpleenSegApp) - End run\n" ] } ], @@ -1014,9 +1122,157 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 11, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "\u001b[34mGoing to initiate execution of operator DICOMDataLoaderOperator\u001b[39m\n", + "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 413912, Operator ID: c15434f0-270b-4894-b9d9-6e85c00d6fb3)\u001b[39m\n", + "\u001b[34mDone performing execution of operator DICOMDataLoaderOperator\n", + "\u001b[39m\n", + "\u001b[34mGoing to initiate execution of operator DICOMSeriesSelectorOperator\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 413912, Operator ID: e6c56f61-c590-4c68-a47a-a155743c85cd)\u001b[39m\n", + "[2023-07-11 15:00:27,434] [INFO] (root) - Finding series for Selection named: CT Series\n", + "[2023-07-11 15:00:27,434] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", + " # of series: 1\n", + "[2023-07-11 15:00:27,434] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "[2023-07-11 15:00:27,435] [INFO] (root) - On attribute: 'StudyDescription' to match value: '(.*?)'\n", + "[2023-07-11 15:00:27,435] [INFO] (root) - Series attribute StudyDescription value: CT ABDOMEN W IV CONTRAST\n", + "[2023-07-11 15:00:27,435] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 15:00:27,435] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", + "[2023-07-11 15:00:27,435] [INFO] (root) - Series attribute Modality value: CT\n", + "[2023-07-11 15:00:27,435] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 15:00:27,435] [INFO] (root) - On attribute: 'SeriesDescription' to match value: '(.*?)'\n", + "[2023-07-11 15:00:27,435] [INFO] (root) - Series attribute SeriesDescription value: ABD/PANC 3.0 B31f\n", + "[2023-07-11 15:00:27,435] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 15:00:27,435] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "\u001b[34mDone performing execution of operator DICOMSeriesSelectorOperator\n", + "\u001b[39m\n", + "\u001b[34mGoing to initiate execution of operator DICOMSeriesToVolumeOperator\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 413912, Operator ID: c5370c00-9e19-4ff1-8111-de40de8ecb40)\u001b[39m\n", + "\u001b[34mDone performing execution of operator DICOMSeriesToVolumeOperator\n", + "\u001b[39m\n", + "\u001b[34mGoing to initiate execution of operator MonaiBundleInferenceOperator\u001b[39m\n", + "\u001b[32mExecuting operator MonaiBundleInferenceOperator \u001b[33m(Process ID: 413912, Operator ID: 0fa427d3-ede4-4148-8abc-5cf3d0720b27)\u001b[39m\n", + "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:321: FutureWarning: monai.transforms.io.dictionary LoadImaged.__init__:image_only: Current default value of argument `image_only=False` has been deprecated since version 1.1. It will be changed to `image_only=True` in version 1.3.\n", + " warn_deprecated(argname, msg, warning_category)\n", + "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:321: FutureWarning: monai.transforms.io.dictionary SaveImaged.__init__:resample: Current default value of argument `resample=True` has been deprecated since version 1.1. It will be changed to `resample=False` in version 1.3.\n", + " warn_deprecated(argname, msg, warning_category)\n", + "\u001b[34mDone performing execution of operator MonaiBundleInferenceOperator\n", + "\u001b[39m\n", + "\u001b[34mGoing to initiate execution of operator DICOMSegmentationWriterOperator\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 413912, Operator ID: c87bb2cb-7984-4b01-a828-21b903d34c84)\u001b[39m\n", + "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/highdicom/valuerep.py:54: UserWarning: The string \"C3N-00198\" is unlikely to represent the intended person name since it contains only a single component. Construct a person name according to the format in described in http://dicom.nema.org/dicom/2013/output/chtml/part05/sect_6.2.html#sect_6.2.1.2, or, in pydicom 2.2.0 or later, use the pydicom.valuerep.PersonName.from_named_components() method to construct the person name correctly. If a single-component name is really intended, add a trailing caret character to disambiguate the name.\n", + " warnings.warn(\n", + "[2023-07-11 15:00:35,432] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", + "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR UL.\n", + " warnings.warn(msg)\n", + "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR US.\n", + " warnings.warn(msg)\n", + "[2023-07-11 15:00:35,433] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", + "[2023-07-11 15:00:35,434] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", + "[2023-07-11 15:00:35,435] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", + "[2023-07-11 15:00:35,435] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", + "[2023-07-11 15:00:35,436] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", + "[2023-07-11 15:00:35,436] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", + "[2023-07-11 15:00:35,438] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", + "[2023-07-11 15:00:35,438] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", + "[2023-07-11 15:00:35,439] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", + "[2023-07-11 15:00:35,439] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", + "[2023-07-11 15:00:35,440] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", + "[2023-07-11 15:00:35,441] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", + "[2023-07-11 15:00:35,441] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", + "[2023-07-11 15:00:35,442] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", + "[2023-07-11 15:00:35,442] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", + "[2023-07-11 15:00:35,443] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", + "[2023-07-11 15:00:35,443] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", + "[2023-07-11 15:00:35,444] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", + "[2023-07-11 15:00:35,445] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", + "[2023-07-11 15:00:35,445] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", + "[2023-07-11 15:00:35,446] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", + "[2023-07-11 15:00:35,446] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", + "[2023-07-11 15:00:35,447] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", + "[2023-07-11 15:00:35,447] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", + "[2023-07-11 15:00:35,448] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", + "[2023-07-11 15:00:35,449] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", + "[2023-07-11 15:00:35,449] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", + "[2023-07-11 15:00:35,450] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", + "[2023-07-11 15:00:35,450] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", + "[2023-07-11 15:00:35,451] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", + "[2023-07-11 15:00:35,452] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", + "[2023-07-11 15:00:35,452] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", + "[2023-07-11 15:00:35,453] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", + "[2023-07-11 15:00:35,453] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", + "[2023-07-11 15:00:35,454] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", + "[2023-07-11 15:00:35,455] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", + "[2023-07-11 15:00:35,455] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", + "[2023-07-11 15:00:35,456] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", + "[2023-07-11 15:00:35,456] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", + "[2023-07-11 15:00:35,457] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", + "[2023-07-11 15:00:35,457] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", + "[2023-07-11 15:00:35,458] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", + "[2023-07-11 15:00:35,459] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", + "[2023-07-11 15:00:35,459] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", + "[2023-07-11 15:00:35,460] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", + "[2023-07-11 15:00:35,460] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", + "[2023-07-11 15:00:35,461] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", + "[2023-07-11 15:00:35,462] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", + "[2023-07-11 15:00:35,462] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", + "[2023-07-11 15:00:35,463] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", + "[2023-07-11 15:00:35,463] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", + "[2023-07-11 15:00:35,464] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", + "[2023-07-11 15:00:35,464] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", + "[2023-07-11 15:00:35,465] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", + "[2023-07-11 15:00:35,466] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", + "[2023-07-11 15:00:35,466] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", + "[2023-07-11 15:00:35,467] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", + "[2023-07-11 15:00:35,467] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", + "[2023-07-11 15:00:35,468] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", + "[2023-07-11 15:00:35,469] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", + "[2023-07-11 15:00:35,469] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", + "[2023-07-11 15:00:35,470] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", + "[2023-07-11 15:00:35,470] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", + "[2023-07-11 15:00:35,471] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", + "[2023-07-11 15:00:35,471] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", + "[2023-07-11 15:00:35,472] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", + "[2023-07-11 15:00:35,473] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", + "[2023-07-11 15:00:35,473] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", + "[2023-07-11 15:00:35,474] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", + "[2023-07-11 15:00:35,474] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", + "[2023-07-11 15:00:35,475] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", + "[2023-07-11 15:00:35,476] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", + "[2023-07-11 15:00:35,476] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", + "[2023-07-11 15:00:35,477] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", + "[2023-07-11 15:00:35,477] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", + "[2023-07-11 15:00:35,478] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", + "[2023-07-11 15:00:35,479] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", + "[2023-07-11 15:00:35,479] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", + "[2023-07-11 15:00:35,480] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", + "[2023-07-11 15:00:35,481] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", + "[2023-07-11 15:00:35,481] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", + "[2023-07-11 15:00:35,482] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", + "[2023-07-11 15:00:35,482] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", + "[2023-07-11 15:00:35,483] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", + "[2023-07-11 15:00:35,484] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", + "[2023-07-11 15:00:35,484] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", + "[2023-07-11 15:00:35,524] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:00:35,524] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", + "[2023-07-11 15:00:35,524] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:00:35,524] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", + "[2023-07-11 15:00:35,524] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", + "[2023-07-11 15:00:35,524] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:00:35,524] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", + "[2023-07-11 15:00:35,525] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", + "[2023-07-11 15:00:35,525] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", + "\u001b[34mDone performing execution of operator DICOMSegmentationWriterOperator\n", + "\u001b[39m\n", + "[2023-07-11 15:00:35,601] [INFO] (app.AISpleenSegApp) - End run\n" + ] + } + ], "source": [ "import os\n", "os.environ['MKL_THREADING_LAYER'] = 'GNU'\n", @@ -1025,9 +1281,19 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 12, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "1.2.826.0.1.3680043.10.511.3.12266592655762762073286392126062966.dcm\n", + "1.2.826.0.1.3680043.10.511.3.15339500169092417659022541512329247.dcm\n", + "1.2.826.0.1.3680043.10.511.3.97339166683317960538431021654501451.dcm\n" + ] + } + ], "source": [ "!ls output" ] @@ -1048,9 +1314,335 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 13, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "[2023-07-11 15:00:41,931] [INFO] (root) - Begin compose\n", + "[2023-07-11 15:00:41,936] [INFO] (root) - End compose\n", + "Building MONAI Application Package... -\u001b[1A\u001b[1B\u001b[0G\u001b[?25l[+] Building 0.0s (0/1) \n", + "\u001b[?25\\\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.2s (4/19) \n", + "\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m => [internal] load build context 0.1s\n", + " => => transferring context: 23B 0.1s\n", + "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.3s (4/19) \n", + "\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m => [internal] load build context 0.2s\n", + "\u001b[34m => => transferring context: 19.90MB 0.2s\n", + "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.4s (13/19) \n", + "\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", + "\u001b[0m\u001b[34m => => transferring context: 19.90MB 0.2s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.1s\n", + "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.6s (14/19) \n", + "\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", + "\u001b[0m\u001b[34m => => transferring context: 19.90MB 0.2s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.2s\n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.7s (14/19) \n", + "\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", + "\u001b[0m\u001b[34m => => transferring context: 19.90MB 0.2s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.2s\n", + "\u001b[0m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.1s\n", + "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.9s (14/19) \n", + "\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", + "\u001b[0m\u001b[34m => => transferring context: 19.90MB 0.2s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.2s\n", + "\u001b[0m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.3s\n", + "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.0s (14/19) \n", + "\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", + "\u001b[0m\u001b[34m => => transferring context: 19.90MB 0.2s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.2s\n", + "\u001b[0m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.4s\n", + "\u001b[2m => => # User site package location: /root/.local/lib/python3.8/site-packages \n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.1s (15/19) \n", + "\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", + "\u001b[0m\u001b[34m => => transferring context: 19.90MB 0.2s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.2s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m => [12/15] COPY ./map/app.json /etc/monai/ 0.0s\n", + "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.2s (16/19) \n", + "\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", + "\u001b[0m\u001b[34m => => transferring context: 19.90MB 0.2s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.2s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.3s (17/19) \n", + "\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", + "\u001b[0m\u001b[34m => => transferring context: 19.90MB 0.2s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.2s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.5s (18/19) \n", + "\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", + "\u001b[0m\u001b[34m => => transferring context: 19.90MB 0.2s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.2s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", + "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.6s (19/19) \n", + "\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", + "\u001b[0m\u001b[34m => => transferring context: 19.90MB 0.2s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.2s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", + "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.1s\n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.7s (19/20) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", + "\u001b[0m\u001b[34m => => transferring context: 19.90MB 0.2s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.2s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", + "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.1s\n", + "\u001b[0m => exporting to image 0.1s\n", + " => => exporting layers 0.1s\n", + "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 1.8s (19/20) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", + "\u001b[0m\u001b[34m => => transferring context: 19.90MB 0.2s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.2s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", + "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.1s\n", + "\u001b[0m => exporting to image 0.3s\n", + "\u001b[34m => => exporting layers 0.3s\n", + "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.0s (20/20) \n", + "\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", + "\u001b[0m\u001b[34m => => transferring context: 19.90MB 0.2s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.2s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", + "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => exporting to image 0.3s\n", + "\u001b[0m\u001b[34m => => exporting layers 0.3s\n", + "\u001b[0m\u001b[34m => => writing image sha256:9f01fddb4570627a9ea7a1bb280a3f269dc6ec43f39dc 0.0s\n", + "\u001b[0m\u001b[34m => => naming to docker.io/library/my_app:latest 0.0s\n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.0s (20/20) FINISHED \n", + "\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 0.2s\n", + "\u001b[0m\u001b[34m => => transferring context: 19.90MB 0.2s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.2s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", + "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => exporting to image 0.3s\n", + "\u001b[0m\u001b[34m => => exporting layers 0.3s\n", + "\u001b[0m\u001b[34m => => writing image sha256:9f01fddb4570627a9ea7a1bb280a3f269dc6ec43f39dc 0.0s\n", + "\u001b[0m\u001b[34m => => naming to docker.io/library/my_app:latest 0.0s\n", + "\u001b[0m\u001b[?25Done\n", + "[2023-07-11 15:00:44,327] [INFO] (app_packager) - Successfully built my_app:latest\n" + ] + } + ], "source": [ "!monai-deploy package -b nvcr.io/nvidia/pytorch:22.08-py3 my_app --tag my_app:latest -m model.ts" ] @@ -1068,9 +1660,17 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 14, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "my_app latest 9f01fddb4570 3 seconds ago 15GB\n" + ] + } + ], "source": [ "!docker image ls | grep my_app" ] @@ -1086,9 +1686,176 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 15, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Checking dependencies...\n", + "--> Verifying if \"docker\" is installed...\n", + "\n", + "--> Verifying if \"my_app:latest\" is available...\n", + "\n", + "Checking for MAP \"my_app:latest\" locally\n", + "\"my_app:latest\" found.\n", + "\n", + "Reading MONAI App Package manifest...\n", + "\u001b[sPreparing to copy...\u001b[?25l\u001b[u\u001b[2KCopying from container - 0B\u001b[?25h\u001b[u\u001b[2KSuccessfully copied 2.05kB to /tmp/tmpwnwaytnq/app.json\n", + "\u001b[sPreparing to copy...\u001b[?25l\u001b[u\u001b[2KCopying from container - 0B\u001b[?25h\u001b[u\u001b[2KSuccessfully copied 2.05kB to /tmp/tmpwnwaytnq/pkg.json\n", + "--> Verifying if \"nvidia-docker\" is installed...\n", + "\n", + "/opt/conda/lib/python3.8/site-packages/scipy/__init__.py:138: UserWarning: A NumPy version >=1.16.5 and <1.23.0 is required for this version of SciPy (detected version 1.24.3)\n", + " warnings.warn(f\"A NumPy version >={np_minversion} and <{np_maxversion} is required for this version of \"\n", + "INFO:root:Begin compose\n", + "DEBUG:root:Bundle path, None, not valid. Will get it in the execution context.\n", + "INFO:root:End compose\n", + "INFO:__main__.AISpleenSegApp:Begin run\n", + "\u001b[34mGoing to initiate execution of operator DICOMDataLoaderOperator\u001b[39m\n", + "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 1, Operator ID: 7b3f6258-8fab-477e-a926-133147339b24)\u001b[39m\n", + "\u001b[34mDone performing execution of operator DICOMDataLoaderOperator\n", + "\u001b[39m\n", + "\u001b[34mGoing to initiate execution of operator DICOMSeriesSelectorOperator\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 1, Operator ID: 26bc3a27-5e3f-4ab3-b7ce-aca5692714eb)\u001b[39m\n", + "[2023-07-11 22:00:55,959] [INFO] (root) - Finding series for Selection named: CT Series\n", + "[2023-07-11 22:00:55,960] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", + " # of series: 1\n", + "[2023-07-11 22:00:55,960] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "[2023-07-11 22:00:55,960] [INFO] (root) - On attribute: 'StudyDescription' to match value: '(.*?)'\n", + "[2023-07-11 22:00:55,960] [INFO] (root) - Series attribute StudyDescription value: CT ABDOMEN W IV CONTRAST\n", + "[2023-07-11 22:00:55,960] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 22:00:55,960] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", + "[2023-07-11 22:00:55,960] [INFO] (root) - Series attribute Modality value: CT\n", + "[2023-07-11 22:00:55,960] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 22:00:55,960] [INFO] (root) - On attribute: 'SeriesDescription' to match value: '(.*?)'\n", + "[2023-07-11 22:00:55,960] [INFO] (root) - Series attribute SeriesDescription value: ABD/PANC 3.0 B31f\n", + "[2023-07-11 22:00:55,960] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 22:00:55,960] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "\u001b[34mDone performing execution of operator DICOMSeriesSelectorOperator\n", + "\u001b[39m\n", + "\u001b[34mGoing to initiate execution of operator DICOMSeriesToVolumeOperator\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 1, Operator ID: 7e353cfa-01ac-4ae6-bc87-b58751c23854)\u001b[39m\n", + "\u001b[34mDone performing execution of operator DICOMSeriesToVolumeOperator\n", + "\u001b[39m\n", + "\u001b[34mGoing to initiate execution of operator MonaiBundleInferenceOperator\u001b[39m\n", + "\u001b[32mExecuting operator MonaiBundleInferenceOperator \u001b[33m(Process ID: 1, Operator ID: 0db9a5cd-6866-47e4-bb2b-451cfc653ecc)\u001b[39m\n", + "/root/.local/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:321: FutureWarning: monai.transforms.io.dictionary LoadImaged.__init__:image_only: Current default value of argument `image_only=False` has been deprecated since version 1.1. It will be changed to `image_only=True` in version 1.3.\n", + " warn_deprecated(argname, msg, warning_category)\n", + "/root/.local/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:321: FutureWarning: monai.transforms.io.dictionary SaveImaged.__init__:resample: Current default value of argument `resample=True` has been deprecated since version 1.1. It will be changed to `resample=False` in version 1.3.\n", + " warn_deprecated(argname, msg, warning_category)\n", + "\u001b[34mDone performing execution of operator MonaiBundleInferenceOperator\n", + "\u001b[39m\n", + "\u001b[34mGoing to initiate execution of operator DICOMSegmentationWriterOperator\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 1, Operator ID: a96f984e-56d3-46e3-9178-342a1dcc53fb)\u001b[39m\n", + "/root/.local/lib/python3.8/site-packages/highdicom/valuerep.py:54: UserWarning: The string \"C3N-00198\" is unlikely to represent the intended person name since it contains only a single component. Construct a person name according to the format in described in http://dicom.nema.org/dicom/2013/output/chtml/part05/sect_6.2.html#sect_6.2.1.2, or, in pydicom 2.2.0 or later, use the pydicom.valuerep.PersonName.from_named_components() method to construct the person name correctly. If a single-component name is really intended, add a trailing caret character to disambiguate the name.\n", + " warnings.warn(\n", + "[2023-07-11 22:01:03,911] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", + "/root/.local/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR UL.\n", + " warnings.warn(msg)\n", + "/root/.local/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR US.\n", + " warnings.warn(msg)\n", + "[2023-07-11 22:01:03,915] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", + "[2023-07-11 22:01:03,916] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", + "[2023-07-11 22:01:03,916] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", + "[2023-07-11 22:01:03,917] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", + "[2023-07-11 22:01:03,918] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", + "[2023-07-11 22:01:03,918] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", + "[2023-07-11 22:01:03,919] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", + "[2023-07-11 22:01:03,920] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", + "[2023-07-11 22:01:03,920] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", + "[2023-07-11 22:01:03,921] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", + "[2023-07-11 22:01:03,922] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", + "[2023-07-11 22:01:03,923] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", + "[2023-07-11 22:01:03,923] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", + "[2023-07-11 22:01:03,924] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", + "[2023-07-11 22:01:03,925] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", + "[2023-07-11 22:01:03,925] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", + "[2023-07-11 22:01:03,926] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", + "[2023-07-11 22:01:03,927] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", + "[2023-07-11 22:01:03,927] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", + "[2023-07-11 22:01:03,928] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", + "[2023-07-11 22:01:03,929] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", + "[2023-07-11 22:01:03,929] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", + "[2023-07-11 22:01:03,930] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", + "[2023-07-11 22:01:03,931] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", + "[2023-07-11 22:01:03,931] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", + "[2023-07-11 22:01:03,932] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", + "[2023-07-11 22:01:03,933] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", + "[2023-07-11 22:01:03,934] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", + "[2023-07-11 22:01:03,934] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", + "[2023-07-11 22:01:03,935] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", + "[2023-07-11 22:01:03,936] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", + "[2023-07-11 22:01:03,936] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", + "[2023-07-11 22:01:03,937] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", + "[2023-07-11 22:01:03,938] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", + "[2023-07-11 22:01:03,938] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", + "[2023-07-11 22:01:03,939] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", + "[2023-07-11 22:01:03,940] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", + "[2023-07-11 22:01:03,940] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", + "[2023-07-11 22:01:03,941] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", + "[2023-07-11 22:01:03,942] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", + "[2023-07-11 22:01:03,942] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", + "[2023-07-11 22:01:03,943] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", + "[2023-07-11 22:01:03,944] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", + "[2023-07-11 22:01:03,945] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", + "[2023-07-11 22:01:03,945] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", + "[2023-07-11 22:01:03,946] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", + "[2023-07-11 22:01:03,947] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", + "[2023-07-11 22:01:03,947] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", + "[2023-07-11 22:01:03,948] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", + "[2023-07-11 22:01:03,949] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", + "[2023-07-11 22:01:03,950] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", + "[2023-07-11 22:01:03,950] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", + "[2023-07-11 22:01:03,951] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", + "[2023-07-11 22:01:03,952] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", + "[2023-07-11 22:01:03,953] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", + "[2023-07-11 22:01:03,953] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", + "[2023-07-11 22:01:03,954] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", + "[2023-07-11 22:01:03,955] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", + "[2023-07-11 22:01:03,956] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", + "[2023-07-11 22:01:03,957] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", + "[2023-07-11 22:01:03,958] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", + "[2023-07-11 22:01:03,958] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", + "[2023-07-11 22:01:03,959] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", + "[2023-07-11 22:01:03,960] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", + "[2023-07-11 22:01:03,961] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", + "[2023-07-11 22:01:03,961] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", + "[2023-07-11 22:01:03,962] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", + "[2023-07-11 22:01:03,963] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", + "[2023-07-11 22:01:03,963] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", + "[2023-07-11 22:01:03,964] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", + "[2023-07-11 22:01:03,965] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", + "[2023-07-11 22:01:03,965] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", + "[2023-07-11 22:01:03,966] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", + "[2023-07-11 22:01:03,966] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", + "[2023-07-11 22:01:03,967] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", + "[2023-07-11 22:01:03,968] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", + "[2023-07-11 22:01:03,968] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", + "[2023-07-11 22:01:03,969] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", + "[2023-07-11 22:01:03,970] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", + "[2023-07-11 22:01:03,971] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", + "[2023-07-11 22:01:03,971] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", + "[2023-07-11 22:01:03,972] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", + "[2023-07-11 22:01:03,973] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", + "[2023-07-11 22:01:03,973] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", + "[2023-07-11 22:01:03,974] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", + "[2023-07-11 22:01:03,974] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", + "[2023-07-11 22:01:04,012] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 22:01:04,013] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", + "[2023-07-11 22:01:04,013] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 22:01:04,013] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", + "[2023-07-11 22:01:04,013] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", + "[2023-07-11 22:01:04,013] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 22:01:04,013] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", + "[2023-07-11 22:01:04,014] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", + "[2023-07-11 22:01:04,014] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", + "\u001b[34mDone performing execution of operator DICOMSegmentationWriterOperator\n", + "\u001b[39m\n", + "[2023-07-11 22:01:04,106] [INFO] (__main__.AISpleenSegApp) - End run\n" + ] + } + ], "source": [ "# Copy DICOM files are in 'dcm' folder\n", "\n", @@ -1098,9 +1865,20 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 16, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "1.2.826.0.1.3680043.10.511.3.12266592655762762073286392126062966.dcm\n", + "1.2.826.0.1.3680043.10.511.3.15339500169092417659022541512329247.dcm\n", + "1.2.826.0.1.3680043.10.511.3.84214980859732118016879201737849492.dcm\n", + "1.2.826.0.1.3680043.10.511.3.97339166683317960538431021654501451.dcm\n" + ] + } + ], "source": [ "!ls output" ] diff --git a/notebooks/tutorials/07_multi_model_app.ipynb b/notebooks/tutorials/07_multi_model_app.ipynb index ce7b562d..b5b4575a 100644 --- a/notebooks/tutorials/07_multi_model_app.ipynb +++ b/notebooks/tutorials/07_multi_model_app.ipynb @@ -144,7 +144,6 @@ "!python -c \"import pydicom\" || pip install -q \"pydicom>=1.4.2\"\n", "!python -c \"import highdicom\" || pip install -q \"highdicom>=0.18.2\"\n", "!python -c \"import SimpleITK\" || pip install -q \"SimpleITK>=2.0.0\"\n", - "!python -c \"import typeguard\" || pip install -q \"typeguard~=2.12.1\"\n", "\n", "# Install MONAI Deploy App SDK package\n", "!python -c \"import monai.deploy\" || pip install --upgrade -q \"monai-deploy-app-sdk\"" @@ -180,16 +179,16 @@ "Requirement already satisfied: tqdm in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from gdown) (4.65.0)\n", "Requirement already satisfied: beautifulsoup4 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from gdown) (4.12.2)\n", "Requirement already satisfied: soupsieve>1.2 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from beautifulsoup4->gdown) (2.4.1)\n", - "Requirement already satisfied: charset-normalizer<4,>=2 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (3.1.0)\n", + "Requirement already satisfied: charset-normalizer<4,>=2 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (3.2.0)\n", "Requirement already satisfied: idna<4,>=2.5 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (3.4)\n", "Requirement already satisfied: urllib3<3,>=1.21.1 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (2.0.3)\n", "Requirement already satisfied: certifi>=2017.4.17 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (2023.5.7)\n", "Requirement already satisfied: PySocks!=1.5.7,>=1.5.6 in /home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages (from requests[socks]->gdown) (1.7.1)\n", "Downloading...\n", "From (uriginal): https://drive.google.com/uc?id=1llJ4NGNTjY187RLX4MtlmHYhfGxBNWmd\n", - "From (redirected): https://drive.google.com/uc?id=1llJ4NGNTjY187RLX4MtlmHYhfGxBNWmd&confirm=t&uuid=a4ff9f27-be83-4002-bc3b-8817adc3026e\n", + "From (redirected): https://drive.google.com/uc?id=1llJ4NGNTjY187RLX4MtlmHYhfGxBNWmd&confirm=t&uuid=a70f3c23-bc81-478a-a63f-4e85ccf6c0a8\n", "To: /home/mqin/src/monai-deploy-app-sdk/notebooks/tutorials/ai_multi_model_bundle_data.zip\n", - "100%|████████████████████████████████████████| 647M/647M [00:08<00:00, 72.5MB/s]\n", + "100%|████████████████████████████████████████| 647M/647M [00:07<00:00, 80.9MB/s]\n", "Archive: ai_multi_model_bundle_data.zip\n", " inflating: dcm/1-001.dcm \n", " inflating: dcm/1-002.dcm \n", @@ -704,27 +703,27 @@ "output_type": "stream", "text": [ "\u001b[34mGoing to initiate execution of operator DICOMDataLoaderOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 213316, Operator ID: 88d4511f-740e-4790-b1c8-75d0cd026e42)\u001b[39m\n" + "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 415081, Operator ID: 7f37dc9e-e1f9-488c-8b6d-d8f430709920)\u001b[39m\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "[2023-07-07 14:48:34,135] [INFO] (root) - Finding series for Selection named: CT Series\n", - "[2023-07-07 14:48:34,135] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", + "[2023-07-11 15:09:22,410] [INFO] (root) - Finding series for Selection named: CT Series\n", + "[2023-07-11 15:09:22,411] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", " # of series: 1\n", - "[2023-07-07 14:48:34,136] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", - "[2023-07-07 14:48:34,137] [INFO] (root) - On attribute: 'StudyDescription' to match value: '(.*?)'\n", - "[2023-07-07 14:48:34,137] [INFO] (root) - Series attribute StudyDescription value: CT ABDOMEN W IV CONTRAST\n", - "[2023-07-07 14:48:34,138] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 14:48:34,139] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", - "[2023-07-07 14:48:34,139] [INFO] (root) - Series attribute Modality value: CT\n", - "[2023-07-07 14:48:34,140] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 14:48:34,141] [INFO] (root) - On attribute: 'SeriesDescription' to match value: '(.*?)'\n", - "[2023-07-07 14:48:34,141] [INFO] (root) - Series attribute SeriesDescription value: ABD/PANC 3.0 B31f\n", - "[2023-07-07 14:48:34,142] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 14:48:34,142] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n" + "[2023-07-11 15:09:22,411] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "[2023-07-11 15:09:22,412] [INFO] (root) - On attribute: 'StudyDescription' to match value: '(.*?)'\n", + "[2023-07-11 15:09:22,413] [INFO] (root) - Series attribute StudyDescription value: CT ABDOMEN W IV CONTRAST\n", + "[2023-07-11 15:09:22,413] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 15:09:22,414] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", + "[2023-07-11 15:09:22,415] [INFO] (root) - Series attribute Modality value: CT\n", + "[2023-07-11 15:09:22,415] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 15:09:22,416] [INFO] (root) - On attribute: 'SeriesDescription' to match value: '(.*?)'\n", + "[2023-07-11 15:09:22,417] [INFO] (root) - Series attribute SeriesDescription value: ABD/PANC 3.0 B31f\n", + "[2023-07-11 15:09:22,417] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 15:09:22,418] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n" ] }, { @@ -734,15 +733,15 @@ "\u001b[34mDone performing execution of operator DICOMDataLoaderOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesSelectorOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 213316, Operator ID: 9e12794e-d30f-4a1e-96fc-2e966dc745e2)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 415081, Operator ID: 2cfac9cc-4a82-48a0-8537-6e59ef159bd7)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMSeriesSelectorOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesToVolumeOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 213316, Operator ID: 9608c853-02e6-4022-827d-54a800e31f51)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 415081, Operator ID: 46637ecd-8028-421d-8a3a-ad163e0f2f89)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMSeriesToVolumeOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator MonaiBundleInferenceOperator\u001b[39m\n", - "\u001b[32mExecuting operator MonaiBundleInferenceOperator \u001b[33m(Process ID: 213316, Operator ID: 6965fd0a-0474-4b48-8195-b905f3981502)\u001b[39m\n" + "\u001b[32mExecuting operator MonaiBundleInferenceOperator \u001b[33m(Process ID: 415081, Operator ID: 29c04f6d-0dda-4f7f-b107-79f3fb8536de)\u001b[39m\n" ] }, { @@ -762,11 +761,11 @@ "\u001b[34mDone performing execution of operator MonaiBundleInferenceOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator MonaiBundleInferenceOperator\u001b[39m\n", - "\u001b[32mExecuting operator MonaiBundleInferenceOperator \u001b[33m(Process ID: 213316, Operator ID: 92dbc72f-274a-41e9-a64d-d965daac002f)\u001b[39m\n", + "\u001b[32mExecuting operator MonaiBundleInferenceOperator \u001b[33m(Process ID: 415081, Operator ID: baa44afc-e000-43b1-86dc-af1888d61cea)\u001b[39m\n", "\u001b[34mDone performing execution of operator MonaiBundleInferenceOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSegmentationWriterOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 213316, Operator ID: f4880421-0076-41cd-8cba-e13871fa00cb)\u001b[39m\n" + "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 415081, Operator ID: 985d4518-81cb-445c-8f1a-a9e327a39b1a)\u001b[39m\n" ] }, { @@ -775,106 +774,106 @@ "text": [ "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/highdicom/valuerep.py:54: UserWarning: The string \"C3N-00198\" is unlikely to represent the intended person name since it contains only a single component. Construct a person name according to the format in described in http://dicom.nema.org/dicom/2013/output/chtml/part05/sect_6.2.html#sect_6.2.1.2, or, in pydicom 2.2.0 or later, use the pydicom.valuerep.PersonName.from_named_components() method to construct the person name correctly. If a single-component name is really intended, add a trailing caret character to disambiguate the name.\n", " warnings.warn(\n", - "[2023-07-07 14:50:12,070] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", + "[2023-07-11 15:10:56,832] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR UL.\n", " warnings.warn(msg)\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR US.\n", " warnings.warn(msg)\n", - "[2023-07-07 14:50:12,073] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", - "[2023-07-07 14:50:12,074] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", - "[2023-07-07 14:50:12,076] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", - "[2023-07-07 14:50:12,077] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", - "[2023-07-07 14:50:12,078] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", - "[2023-07-07 14:50:12,080] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", - "[2023-07-07 14:50:12,081] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", - "[2023-07-07 14:50:12,082] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", - "[2023-07-07 14:50:12,083] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", - "[2023-07-07 14:50:12,085] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", - "[2023-07-07 14:50:12,086] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", - "[2023-07-07 14:50:12,087] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", - "[2023-07-07 14:50:12,088] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", - "[2023-07-07 14:50:12,090] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", - "[2023-07-07 14:50:12,091] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", - "[2023-07-07 14:50:12,092] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", - "[2023-07-07 14:50:12,094] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", - "[2023-07-07 14:50:12,095] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", - "[2023-07-07 14:50:12,097] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", - "[2023-07-07 14:50:12,099] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", - "[2023-07-07 14:50:12,100] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", - "[2023-07-07 14:50:12,101] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", - "[2023-07-07 14:50:12,103] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", - "[2023-07-07 14:50:12,104] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", - "[2023-07-07 14:50:12,105] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", - "[2023-07-07 14:50:12,108] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", - "[2023-07-07 14:50:12,109] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", - "[2023-07-07 14:50:12,111] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", - "[2023-07-07 14:50:12,112] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", - "[2023-07-07 14:50:12,114] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", - "[2023-07-07 14:50:12,115] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", - "[2023-07-07 14:50:12,117] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", - "[2023-07-07 14:50:12,119] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", - "[2023-07-07 14:50:12,120] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", - "[2023-07-07 14:50:12,122] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", - "[2023-07-07 14:50:12,123] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", - "[2023-07-07 14:50:12,125] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", - "[2023-07-07 14:50:12,127] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", - "[2023-07-07 14:50:12,129] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", - "[2023-07-07 14:50:12,130] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", - "[2023-07-07 14:50:12,132] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", - "[2023-07-07 14:50:12,134] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", - "[2023-07-07 14:50:12,136] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", - "[2023-07-07 14:50:12,138] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", - "[2023-07-07 14:50:12,139] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", - "[2023-07-07 14:50:12,141] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", - "[2023-07-07 14:50:12,143] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", - "[2023-07-07 14:50:12,145] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", - "[2023-07-07 14:50:12,147] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", - "[2023-07-07 14:50:12,149] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", - "[2023-07-07 14:50:12,151] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", - "[2023-07-07 14:50:12,153] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", - "[2023-07-07 14:50:12,155] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", - "[2023-07-07 14:50:12,157] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", - "[2023-07-07 14:50:12,159] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", - "[2023-07-07 14:50:12,161] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", - "[2023-07-07 14:50:12,163] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", - "[2023-07-07 14:50:12,165] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", - "[2023-07-07 14:50:12,167] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", - "[2023-07-07 14:50:12,169] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", - "[2023-07-07 14:50:12,171] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", - "[2023-07-07 14:50:12,173] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", - "[2023-07-07 14:50:12,175] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", - "[2023-07-07 14:50:12,178] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", - "[2023-07-07 14:50:12,180] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", - "[2023-07-07 14:50:12,182] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", - "[2023-07-07 14:50:12,185] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", - "[2023-07-07 14:50:12,187] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", - "[2023-07-07 14:50:12,190] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", - "[2023-07-07 14:50:12,193] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", - "[2023-07-07 14:50:12,196] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", - "[2023-07-07 14:50:12,202] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", - "[2023-07-07 14:50:12,204] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", - "[2023-07-07 14:50:12,207] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", - "[2023-07-07 14:50:12,210] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", - "[2023-07-07 14:50:12,212] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", - "[2023-07-07 14:50:12,214] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", - "[2023-07-07 14:50:12,217] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", - "[2023-07-07 14:50:12,220] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", - "[2023-07-07 14:50:12,222] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", - "[2023-07-07 14:50:12,225] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", - "[2023-07-07 14:50:12,227] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", - "[2023-07-07 14:50:12,229] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", - "[2023-07-07 14:50:12,232] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", - "[2023-07-07 14:50:12,234] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", - "[2023-07-07 14:50:12,236] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", - "[2023-07-07 14:50:12,292] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:50:12,293] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", - "[2023-07-07 14:50:12,294] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:50:12,295] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", - "[2023-07-07 14:50:12,296] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", - "[2023-07-07 14:50:12,297] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:50:12,297] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", - "[2023-07-07 14:50:12,298] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", - "[2023-07-07 14:50:12,299] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n" + "[2023-07-11 15:10:56,835] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", + "[2023-07-11 15:10:56,836] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", + "[2023-07-11 15:10:56,838] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", + "[2023-07-11 15:10:56,839] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", + "[2023-07-11 15:10:56,840] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", + "[2023-07-11 15:10:56,841] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", + "[2023-07-11 15:10:56,843] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", + "[2023-07-11 15:10:56,844] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", + "[2023-07-11 15:10:56,845] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", + "[2023-07-11 15:10:56,846] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", + "[2023-07-11 15:10:56,848] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", + "[2023-07-11 15:10:56,849] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", + "[2023-07-11 15:10:56,850] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", + "[2023-07-11 15:10:56,851] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", + "[2023-07-11 15:10:56,853] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", + "[2023-07-11 15:10:56,854] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", + "[2023-07-11 15:10:56,855] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", + "[2023-07-11 15:10:56,857] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", + "[2023-07-11 15:10:56,858] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", + "[2023-07-11 15:10:56,859] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", + "[2023-07-11 15:10:56,861] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", + "[2023-07-11 15:10:56,862] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", + "[2023-07-11 15:10:56,863] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", + "[2023-07-11 15:10:56,865] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", + "[2023-07-11 15:10:56,866] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", + "[2023-07-11 15:10:56,867] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", + "[2023-07-11 15:10:56,870] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", + "[2023-07-11 15:10:56,871] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", + "[2023-07-11 15:10:56,872] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", + "[2023-07-11 15:10:56,874] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", + "[2023-07-11 15:10:56,875] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", + "[2023-07-11 15:10:56,877] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", + "[2023-07-11 15:10:56,878] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", + "[2023-07-11 15:10:56,879] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", + "[2023-07-11 15:10:56,881] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", + "[2023-07-11 15:10:56,882] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", + "[2023-07-11 15:10:56,884] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", + "[2023-07-11 15:10:56,885] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", + "[2023-07-11 15:10:56,887] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", + "[2023-07-11 15:10:56,888] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", + "[2023-07-11 15:10:56,890] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", + "[2023-07-11 15:10:56,891] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", + "[2023-07-11 15:10:56,893] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", + "[2023-07-11 15:10:56,894] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", + "[2023-07-11 15:10:56,896] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", + "[2023-07-11 15:10:56,897] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", + "[2023-07-11 15:10:56,899] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", + "[2023-07-11 15:10:56,901] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", + "[2023-07-11 15:10:56,903] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", + "[2023-07-11 15:10:56,904] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", + "[2023-07-11 15:10:56,906] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", + "[2023-07-11 15:10:56,907] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", + "[2023-07-11 15:10:56,909] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", + "[2023-07-11 15:10:56,910] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", + "[2023-07-11 15:10:56,912] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", + "[2023-07-11 15:10:56,914] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", + "[2023-07-11 15:10:56,916] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", + "[2023-07-11 15:10:56,917] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", + "[2023-07-11 15:10:56,921] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", + "[2023-07-11 15:10:56,932] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", + "[2023-07-11 15:10:56,936] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", + "[2023-07-11 15:10:56,940] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", + "[2023-07-11 15:10:56,943] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", + "[2023-07-11 15:10:56,947] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", + "[2023-07-11 15:10:56,950] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", + "[2023-07-11 15:10:56,953] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", + "[2023-07-11 15:10:56,956] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", + "[2023-07-11 15:10:56,958] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", + "[2023-07-11 15:10:56,961] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", + "[2023-07-11 15:10:56,964] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", + "[2023-07-11 15:10:56,966] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", + "[2023-07-11 15:10:56,968] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", + "[2023-07-11 15:10:56,970] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", + "[2023-07-11 15:10:56,973] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", + "[2023-07-11 15:10:56,975] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", + "[2023-07-11 15:10:56,977] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", + "[2023-07-11 15:10:56,979] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", + "[2023-07-11 15:10:56,981] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", + "[2023-07-11 15:10:56,983] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", + "[2023-07-11 15:10:56,985] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", + "[2023-07-11 15:10:56,988] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", + "[2023-07-11 15:10:56,990] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", + "[2023-07-11 15:10:56,992] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", + "[2023-07-11 15:10:56,994] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", + "[2023-07-11 15:10:56,995] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", + "[2023-07-11 15:10:56,997] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", + "[2023-07-11 15:10:57,045] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:10:57,046] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", + "[2023-07-11 15:10:57,047] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:10:57,048] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", + "[2023-07-11 15:10:57,049] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", + "[2023-07-11 15:10:57,050] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:10:57,051] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", + "[2023-07-11 15:10:57,052] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", + "[2023-07-11 15:10:57,053] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n" ] }, { @@ -884,91 +883,91 @@ "\u001b[34mDone performing execution of operator DICOMSegmentationWriterOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSegmentationWriterOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 213316, Operator ID: 74b80b84-160e-4d47-ad17-d2ab92b9789c)\u001b[39m\n" + "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 415081, Operator ID: 911a0178-5259-457d-b53d-5cc4c041c582)\u001b[39m\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "[2023-07-07 14:50:14,318] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", - "[2023-07-07 14:50:14,320] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", - "[2023-07-07 14:50:14,321] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", - "[2023-07-07 14:50:14,322] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", - "[2023-07-07 14:50:14,323] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", - "[2023-07-07 14:50:14,325] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", - "[2023-07-07 14:50:14,326] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", - "[2023-07-07 14:50:14,327] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", - "[2023-07-07 14:50:14,328] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", - "[2023-07-07 14:50:14,330] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", - "[2023-07-07 14:50:14,331] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", - "[2023-07-07 14:50:14,332] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", - "[2023-07-07 14:50:14,333] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", - "[2023-07-07 14:50:14,335] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", - "[2023-07-07 14:50:14,336] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", - "[2023-07-07 14:50:14,337] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", - "[2023-07-07 14:50:14,338] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", - "[2023-07-07 14:50:14,340] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", - "[2023-07-07 14:50:14,341] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", - "[2023-07-07 14:50:14,342] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", - "[2023-07-07 14:50:14,343] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", - "[2023-07-07 14:50:14,344] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", - "[2023-07-07 14:50:14,346] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", - "[2023-07-07 14:50:14,347] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", - "[2023-07-07 14:50:14,348] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", - "[2023-07-07 14:50:14,349] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", - "[2023-07-07 14:50:14,351] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", - "[2023-07-07 14:50:14,352] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", - "[2023-07-07 14:50:14,353] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", - "[2023-07-07 14:50:14,355] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", - "[2023-07-07 14:50:14,356] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", - "[2023-07-07 14:50:14,357] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", - "[2023-07-07 14:50:14,359] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", - "[2023-07-07 14:50:14,360] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", - "[2023-07-07 14:50:14,361] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", - "[2023-07-07 14:50:14,363] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", - "[2023-07-07 14:50:14,365] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", - "[2023-07-07 14:50:14,367] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", - "[2023-07-07 14:50:14,369] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", - "[2023-07-07 14:50:14,371] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", - "[2023-07-07 14:50:14,373] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", - "[2023-07-07 14:50:14,375] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", - "[2023-07-07 14:50:14,377] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", - "[2023-07-07 14:50:14,379] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", - "[2023-07-07 14:50:14,382] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", - "[2023-07-07 14:50:14,384] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", - "[2023-07-07 14:50:14,385] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", - "[2023-07-07 14:50:14,387] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", - "[2023-07-07 14:50:14,389] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", - "[2023-07-07 14:50:14,391] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", - "[2023-07-07 14:50:14,393] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", - "[2023-07-07 14:50:14,395] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", - "[2023-07-07 14:50:14,397] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", - "[2023-07-07 14:50:14,399] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", - "[2023-07-07 14:50:14,401] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", - "[2023-07-07 14:50:14,403] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", - "[2023-07-07 14:50:14,405] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", - "[2023-07-07 14:50:14,407] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", - "[2023-07-07 14:50:14,409] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", - "[2023-07-07 14:50:14,411] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", - "[2023-07-07 14:50:14,413] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", - "[2023-07-07 14:50:14,415] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", - "[2023-07-07 14:50:14,417] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", - "[2023-07-07 14:50:14,419] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", - "[2023-07-07 14:50:14,421] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", - "[2023-07-07 14:50:14,423] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", - "[2023-07-07 14:50:14,426] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", - "[2023-07-07 14:50:14,428] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", - "[2023-07-07 14:50:14,470] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:50:14,471] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", - "[2023-07-07 14:50:14,472] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:50:14,472] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", - "[2023-07-07 14:50:14,473] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", - "[2023-07-07 14:50:14,474] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:50:14,475] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", - "[2023-07-07 14:50:14,475] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", - "[2023-07-07 14:50:14,476] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", - "[2023-07-07 14:50:14,551] [INFO] (__main__.App) - End run\n" + "[2023-07-11 15:10:59,095] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", + "[2023-07-11 15:10:59,097] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", + "[2023-07-11 15:10:59,099] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", + "[2023-07-11 15:10:59,100] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", + "[2023-07-11 15:10:59,102] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", + "[2023-07-11 15:10:59,103] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", + "[2023-07-11 15:10:59,105] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", + "[2023-07-11 15:10:59,106] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", + "[2023-07-11 15:10:59,108] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", + "[2023-07-11 15:10:59,109] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", + "[2023-07-11 15:10:59,111] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", + "[2023-07-11 15:10:59,112] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", + "[2023-07-11 15:10:59,114] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", + "[2023-07-11 15:10:59,115] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", + "[2023-07-11 15:10:59,117] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", + "[2023-07-11 15:10:59,118] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", + "[2023-07-11 15:10:59,120] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", + "[2023-07-11 15:10:59,121] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", + "[2023-07-11 15:10:59,123] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", + "[2023-07-11 15:10:59,125] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", + "[2023-07-11 15:10:59,126] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", + "[2023-07-11 15:10:59,128] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", + "[2023-07-11 15:10:59,129] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", + "[2023-07-11 15:10:59,131] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", + "[2023-07-11 15:10:59,132] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", + "[2023-07-11 15:10:59,134] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", + "[2023-07-11 15:10:59,135] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", + "[2023-07-11 15:10:59,137] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", + "[2023-07-11 15:10:59,138] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", + "[2023-07-11 15:10:59,140] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", + "[2023-07-11 15:10:59,141] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", + "[2023-07-11 15:10:59,143] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", + "[2023-07-11 15:10:59,145] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", + "[2023-07-11 15:10:59,147] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", + "[2023-07-11 15:10:59,148] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", + "[2023-07-11 15:10:59,150] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", + "[2023-07-11 15:10:59,151] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", + "[2023-07-11 15:10:59,153] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", + "[2023-07-11 15:10:59,154] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", + "[2023-07-11 15:10:59,156] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", + "[2023-07-11 15:10:59,157] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", + "[2023-07-11 15:10:59,159] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", + "[2023-07-11 15:10:59,160] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", + "[2023-07-11 15:10:59,162] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", + "[2023-07-11 15:10:59,163] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", + "[2023-07-11 15:10:59,165] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", + "[2023-07-11 15:10:59,166] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", + "[2023-07-11 15:10:59,168] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", + "[2023-07-11 15:10:59,169] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", + "[2023-07-11 15:10:59,171] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", + "[2023-07-11 15:10:59,173] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", + "[2023-07-11 15:10:59,174] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", + "[2023-07-11 15:10:59,176] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", + "[2023-07-11 15:10:59,177] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", + "[2023-07-11 15:10:59,179] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", + "[2023-07-11 15:10:59,180] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", + "[2023-07-11 15:10:59,182] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", + "[2023-07-11 15:10:59,183] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", + "[2023-07-11 15:10:59,185] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", + "[2023-07-11 15:10:59,186] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", + "[2023-07-11 15:10:59,188] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", + "[2023-07-11 15:10:59,190] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", + "[2023-07-11 15:10:59,191] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", + "[2023-07-11 15:10:59,193] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", + "[2023-07-11 15:10:59,194] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", + "[2023-07-11 15:10:59,196] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", + "[2023-07-11 15:10:59,198] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", + "[2023-07-11 15:10:59,200] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", + "[2023-07-11 15:10:59,235] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:10:59,236] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", + "[2023-07-11 15:10:59,237] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:10:59,238] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", + "[2023-07-11 15:10:59,239] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", + "[2023-07-11 15:10:59,240] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:10:59,240] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", + "[2023-07-11 15:10:59,241] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", + "[2023-07-11 15:10:59,242] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", + "[2023-07-11 15:10:59,334] [INFO] (__main__.App) - End run\n" ] }, { @@ -1331,33 +1330,33 @@ "INFO:root:End compose\n", "INFO:app.App:Begin run\n", "\u001b[34mGoing to initiate execution of operator DICOMDataLoaderOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 213660, Operator ID: cfef94ed-0213-4571-8412-148bb56fd16c)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 415395, Operator ID: 3cbe4d81-39a7-4e10-85f4-9f19251a17ef)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMDataLoaderOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesSelectorOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 213660, Operator ID: 53e22d7b-adc9-42c3-a7ca-d1d5510f0661)\u001b[39m\n", - "[2023-07-07 14:50:21,313] [INFO] (root) - Finding series for Selection named: CT Series\n", - "[2023-07-07 14:50:21,313] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", + "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 415395, Operator ID: 5da6a638-7841-404e-93f7-2d6bf45f6f4e)\u001b[39m\n", + "[2023-07-11 15:11:05,649] [INFO] (root) - Finding series for Selection named: CT Series\n", + "[2023-07-11 15:11:05,649] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", " # of series: 1\n", - "[2023-07-07 14:50:21,313] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", - "[2023-07-07 14:50:21,313] [INFO] (root) - On attribute: 'StudyDescription' to match value: '(.*?)'\n", - "[2023-07-07 14:50:21,313] [INFO] (root) - Series attribute StudyDescription value: CT ABDOMEN W IV CONTRAST\n", - "[2023-07-07 14:50:21,313] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 14:50:21,314] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", - "[2023-07-07 14:50:21,314] [INFO] (root) - Series attribute Modality value: CT\n", - "[2023-07-07 14:50:21,314] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 14:50:21,314] [INFO] (root) - On attribute: 'SeriesDescription' to match value: '(.*?)'\n", - "[2023-07-07 14:50:21,314] [INFO] (root) - Series attribute SeriesDescription value: ABD/PANC 3.0 B31f\n", - "[2023-07-07 14:50:21,314] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 14:50:21,314] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "[2023-07-11 15:11:05,649] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "[2023-07-11 15:11:05,649] [INFO] (root) - On attribute: 'StudyDescription' to match value: '(.*?)'\n", + "[2023-07-11 15:11:05,649] [INFO] (root) - Series attribute StudyDescription value: CT ABDOMEN W IV CONTRAST\n", + "[2023-07-11 15:11:05,649] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 15:11:05,649] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", + "[2023-07-11 15:11:05,649] [INFO] (root) - Series attribute Modality value: CT\n", + "[2023-07-11 15:11:05,649] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 15:11:05,649] [INFO] (root) - On attribute: 'SeriesDescription' to match value: '(.*?)'\n", + "[2023-07-11 15:11:05,649] [INFO] (root) - Series attribute SeriesDescription value: ABD/PANC 3.0 B31f\n", + "[2023-07-11 15:11:05,650] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 15:11:05,650] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", "\u001b[34mDone performing execution of operator DICOMSeriesSelectorOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesToVolumeOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 213660, Operator ID: 5bdc4a13-dcd8-4a36-9968-d8733fe12d1f)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 415395, Operator ID: 81f99b0c-d32b-46b9-8a68-c3a1f13eb869)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMSeriesToVolumeOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator MonaiBundleInferenceOperator\u001b[39m\n", - "\u001b[32mExecuting operator MonaiBundleInferenceOperator \u001b[33m(Process ID: 213660, Operator ID: 840e10ce-dcc1-4053-a271-5fb8c04c01c8)\u001b[39m\n", + "\u001b[32mExecuting operator MonaiBundleInferenceOperator \u001b[33m(Process ID: 415395, Operator ID: 2219e3a3-3eee-426d-babb-842d064e88de)\u001b[39m\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:321: FutureWarning: monai.transforms.io.dictionary LoadImaged.__init__:image_only: Current default value of argument `image_only=False` has been deprecated since version 1.1. It will be changed to `image_only=True` in version 1.3.\n", " warn_deprecated(argname, msg, warning_category)\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:321: FutureWarning: monai.transforms.io.dictionary SaveImaged.__init__:resample: Current default value of argument `resample=True` has been deprecated since version 1.1. It will be changed to `resample=False` in version 1.3.\n", @@ -1365,197 +1364,197 @@ "\u001b[34mDone performing execution of operator MonaiBundleInferenceOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator MonaiBundleInferenceOperator\u001b[39m\n", - "\u001b[32mExecuting operator MonaiBundleInferenceOperator \u001b[33m(Process ID: 213660, Operator ID: 07b1ab2b-d990-4540-a77b-c567d25c15bb)\u001b[39m\n", + "\u001b[32mExecuting operator MonaiBundleInferenceOperator \u001b[33m(Process ID: 415395, Operator ID: 918f96b7-752d-48aa-847e-5bcc32e6af63)\u001b[39m\n", "\u001b[34mDone performing execution of operator MonaiBundleInferenceOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSegmentationWriterOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 213660, Operator ID: f6cb6087-25ba-42b8-ab18-b547edc5bbbb)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 415395, Operator ID: 73a0259f-a924-41c3-a339-40da2799b505)\u001b[39m\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/highdicom/valuerep.py:54: UserWarning: The string \"C3N-00198\" is unlikely to represent the intended person name since it contains only a single component. Construct a person name according to the format in described in http://dicom.nema.org/dicom/2013/output/chtml/part05/sect_6.2.html#sect_6.2.1.2, or, in pydicom 2.2.0 or later, use the pydicom.valuerep.PersonName.from_named_components() method to construct the person name correctly. If a single-component name is really intended, add a trailing caret character to disambiguate the name.\n", " warnings.warn(\n", - "[2023-07-07 14:51:54,813] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", + "[2023-07-11 15:12:38,762] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR UL.\n", " warnings.warn(msg)\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR US.\n", " warnings.warn(msg)\n", - "[2023-07-07 14:51:54,815] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", - "[2023-07-07 14:51:54,816] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", - "[2023-07-07 14:51:54,816] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", - "[2023-07-07 14:51:54,817] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", - "[2023-07-07 14:51:54,817] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", - "[2023-07-07 14:51:54,818] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", - "[2023-07-07 14:51:54,819] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", - "[2023-07-07 14:51:54,819] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", - "[2023-07-07 14:51:54,820] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", - "[2023-07-07 14:51:54,820] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", - "[2023-07-07 14:51:54,821] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", - "[2023-07-07 14:51:54,822] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", - "[2023-07-07 14:51:54,822] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", - "[2023-07-07 14:51:54,823] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", - "[2023-07-07 14:51:54,823] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", - "[2023-07-07 14:51:54,824] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", - "[2023-07-07 14:51:54,824] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", - "[2023-07-07 14:51:54,825] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", - "[2023-07-07 14:51:54,826] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", - "[2023-07-07 14:51:54,826] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", - "[2023-07-07 14:51:54,827] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", - "[2023-07-07 14:51:54,827] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", - "[2023-07-07 14:51:54,828] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", - "[2023-07-07 14:51:54,829] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", - "[2023-07-07 14:51:54,829] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", - "[2023-07-07 14:51:54,830] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", - "[2023-07-07 14:51:54,830] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", - "[2023-07-07 14:51:54,831] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", - "[2023-07-07 14:51:54,832] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", - "[2023-07-07 14:51:54,832] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", - "[2023-07-07 14:51:54,833] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", - "[2023-07-07 14:51:54,834] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", - "[2023-07-07 14:51:54,834] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", - "[2023-07-07 14:51:54,835] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", - "[2023-07-07 14:51:54,835] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", - "[2023-07-07 14:51:54,836] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", - "[2023-07-07 14:51:54,836] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", - "[2023-07-07 14:51:54,837] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", - "[2023-07-07 14:51:54,838] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", - "[2023-07-07 14:51:54,838] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", - "[2023-07-07 14:51:54,839] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", - "[2023-07-07 14:51:54,839] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", - "[2023-07-07 14:51:54,840] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", - "[2023-07-07 14:51:54,841] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", - "[2023-07-07 14:51:54,841] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", - "[2023-07-07 14:51:54,842] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", - "[2023-07-07 14:51:54,842] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", - "[2023-07-07 14:51:54,843] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", - "[2023-07-07 14:51:54,843] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", - "[2023-07-07 14:51:54,844] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", - "[2023-07-07 14:51:54,845] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", - "[2023-07-07 14:51:54,845] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", - "[2023-07-07 14:51:54,846] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", - "[2023-07-07 14:51:54,846] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", - "[2023-07-07 14:51:54,847] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", - "[2023-07-07 14:51:54,848] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", - "[2023-07-07 14:51:54,848] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", - "[2023-07-07 14:51:54,849] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", - "[2023-07-07 14:51:54,849] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", - "[2023-07-07 14:51:54,850] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", - "[2023-07-07 14:51:54,850] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", - "[2023-07-07 14:51:54,851] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", - "[2023-07-07 14:51:54,852] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", - "[2023-07-07 14:51:54,852] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", - "[2023-07-07 14:51:54,853] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", - "[2023-07-07 14:51:54,853] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", - "[2023-07-07 14:51:54,854] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", - "[2023-07-07 14:51:54,855] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", - "[2023-07-07 14:51:54,855] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", - "[2023-07-07 14:51:54,856] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", - "[2023-07-07 14:51:54,856] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", - "[2023-07-07 14:51:54,857] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", - "[2023-07-07 14:51:54,857] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", - "[2023-07-07 14:51:54,858] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", - "[2023-07-07 14:51:54,859] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", - "[2023-07-07 14:51:54,859] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", - "[2023-07-07 14:51:54,860] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", - "[2023-07-07 14:51:54,860] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", - "[2023-07-07 14:51:54,861] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", - "[2023-07-07 14:51:54,862] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", - "[2023-07-07 14:51:54,862] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", - "[2023-07-07 14:51:54,863] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", - "[2023-07-07 14:51:54,863] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", - "[2023-07-07 14:51:54,864] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", - "[2023-07-07 14:51:54,865] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", - "[2023-07-07 14:51:54,865] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", - "[2023-07-07 14:51:54,904] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:51:54,905] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", - "[2023-07-07 14:51:54,905] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:51:54,905] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", - "[2023-07-07 14:51:54,905] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", - "[2023-07-07 14:51:54,905] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:51:54,905] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", - "[2023-07-07 14:51:54,905] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", - "[2023-07-07 14:51:54,905] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", + "[2023-07-11 15:12:38,764] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", + "[2023-07-11 15:12:38,764] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", + "[2023-07-11 15:12:38,765] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", + "[2023-07-11 15:12:38,766] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", + "[2023-07-11 15:12:38,766] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", + "[2023-07-11 15:12:38,767] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", + "[2023-07-11 15:12:38,767] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", + "[2023-07-11 15:12:38,768] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", + "[2023-07-11 15:12:38,768] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", + "[2023-07-11 15:12:38,769] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", + "[2023-07-11 15:12:38,770] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", + "[2023-07-11 15:12:38,770] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", + "[2023-07-11 15:12:38,771] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", + "[2023-07-11 15:12:38,771] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", + "[2023-07-11 15:12:38,772] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", + "[2023-07-11 15:12:38,772] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", + "[2023-07-11 15:12:38,773] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", + "[2023-07-11 15:12:38,773] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", + "[2023-07-11 15:12:38,774] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", + "[2023-07-11 15:12:38,775] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", + "[2023-07-11 15:12:38,775] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", + "[2023-07-11 15:12:38,776] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", + "[2023-07-11 15:12:38,776] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", + "[2023-07-11 15:12:38,777] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", + "[2023-07-11 15:12:38,777] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", + "[2023-07-11 15:12:38,778] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", + "[2023-07-11 15:12:38,778] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", + "[2023-07-11 15:12:38,779] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", + "[2023-07-11 15:12:38,780] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", + "[2023-07-11 15:12:38,780] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", + "[2023-07-11 15:12:38,781] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", + "[2023-07-11 15:12:38,781] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", + "[2023-07-11 15:12:38,782] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", + "[2023-07-11 15:12:38,782] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", + "[2023-07-11 15:12:38,783] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", + "[2023-07-11 15:12:38,783] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", + "[2023-07-11 15:12:38,784] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", + "[2023-07-11 15:12:38,785] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", + "[2023-07-11 15:12:38,785] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", + "[2023-07-11 15:12:38,786] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", + "[2023-07-11 15:12:38,786] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", + "[2023-07-11 15:12:38,787] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", + "[2023-07-11 15:12:38,787] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", + "[2023-07-11 15:12:38,788] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", + "[2023-07-11 15:12:38,788] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", + "[2023-07-11 15:12:38,789] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", + "[2023-07-11 15:12:38,790] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", + "[2023-07-11 15:12:38,790] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", + "[2023-07-11 15:12:38,791] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", + "[2023-07-11 15:12:38,791] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", + "[2023-07-11 15:12:38,792] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", + "[2023-07-11 15:12:38,792] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", + "[2023-07-11 15:12:38,793] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", + "[2023-07-11 15:12:38,793] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", + "[2023-07-11 15:12:38,794] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", + "[2023-07-11 15:12:38,795] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", + "[2023-07-11 15:12:38,795] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", + "[2023-07-11 15:12:38,796] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", + "[2023-07-11 15:12:38,796] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", + "[2023-07-11 15:12:38,797] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", + "[2023-07-11 15:12:38,797] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", + "[2023-07-11 15:12:38,798] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", + "[2023-07-11 15:12:38,799] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", + "[2023-07-11 15:12:38,799] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", + "[2023-07-11 15:12:38,800] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", + "[2023-07-11 15:12:38,801] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", + "[2023-07-11 15:12:38,801] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", + "[2023-07-11 15:12:38,802] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", + "[2023-07-11 15:12:39,010] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", + "[2023-07-11 15:12:39,011] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", + "[2023-07-11 15:12:39,011] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", + "[2023-07-11 15:12:39,012] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", + "[2023-07-11 15:12:39,012] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", + "[2023-07-11 15:12:39,013] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", + "[2023-07-11 15:12:39,013] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", + "[2023-07-11 15:12:39,014] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", + "[2023-07-11 15:12:39,015] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", + "[2023-07-11 15:12:39,015] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", + "[2023-07-11 15:12:39,016] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", + "[2023-07-11 15:12:39,016] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", + "[2023-07-11 15:12:39,017] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", + "[2023-07-11 15:12:39,017] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", + "[2023-07-11 15:12:39,018] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", + "[2023-07-11 15:12:39,018] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", + "[2023-07-11 15:12:39,019] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", + "[2023-07-11 15:12:39,020] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", + "[2023-07-11 15:12:39,061] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:12:39,061] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", + "[2023-07-11 15:12:39,061] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:12:39,061] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", + "[2023-07-11 15:12:39,061] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", + "[2023-07-11 15:12:39,061] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:12:39,061] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", + "[2023-07-11 15:12:39,062] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", + "[2023-07-11 15:12:39,062] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", "\u001b[34mDone performing execution of operator DICOMSegmentationWriterOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSegmentationWriterOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 213660, Operator ID: cd8a1e91-ae03-4d0a-b1b5-ba11c4dee770)\u001b[39m\n", - "[2023-07-07 14:51:56,931] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", - "[2023-07-07 14:51:56,932] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", - "[2023-07-07 14:51:56,933] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", - "[2023-07-07 14:51:56,933] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", - "[2023-07-07 14:51:56,935] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", - "[2023-07-07 14:51:56,935] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", - "[2023-07-07 14:51:56,936] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", - "[2023-07-07 14:51:56,936] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", - "[2023-07-07 14:51:56,937] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", - "[2023-07-07 14:51:56,938] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", - "[2023-07-07 14:51:56,938] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", - "[2023-07-07 14:51:56,939] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", - "[2023-07-07 14:51:56,939] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", - "[2023-07-07 14:51:56,940] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", - "[2023-07-07 14:51:56,940] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", - "[2023-07-07 14:51:56,941] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", - "[2023-07-07 14:51:56,942] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", - "[2023-07-07 14:51:56,942] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", - "[2023-07-07 14:51:56,943] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", - "[2023-07-07 14:51:56,943] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", - "[2023-07-07 14:51:56,944] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", - "[2023-07-07 14:51:56,945] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", - "[2023-07-07 14:51:56,945] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", - "[2023-07-07 14:51:56,946] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", - "[2023-07-07 14:51:56,946] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", - "[2023-07-07 14:51:56,947] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", - "[2023-07-07 14:51:56,948] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", - "[2023-07-07 14:51:56,948] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", - "[2023-07-07 14:51:56,949] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", - "[2023-07-07 14:51:56,949] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", - "[2023-07-07 14:51:56,950] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", - "[2023-07-07 14:51:56,951] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", - "[2023-07-07 14:51:56,951] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", - "[2023-07-07 14:51:56,952] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", - "[2023-07-07 14:51:56,952] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", - "[2023-07-07 14:51:56,953] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", - "[2023-07-07 14:51:56,953] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", - "[2023-07-07 14:51:56,954] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", - "[2023-07-07 14:51:56,955] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", - "[2023-07-07 14:51:56,955] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", - "[2023-07-07 14:51:56,956] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", - "[2023-07-07 14:51:56,956] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", - "[2023-07-07 14:51:56,957] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", - "[2023-07-07 14:51:56,958] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", - "[2023-07-07 14:51:56,958] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", - "[2023-07-07 14:51:56,959] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", - "[2023-07-07 14:51:56,959] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", - "[2023-07-07 14:51:56,960] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", - "[2023-07-07 14:51:56,961] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", - "[2023-07-07 14:51:56,961] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", - "[2023-07-07 14:51:56,962] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", - "[2023-07-07 14:51:56,962] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", - "[2023-07-07 14:51:56,963] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", - "[2023-07-07 14:51:56,963] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", - "[2023-07-07 14:51:56,964] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", - "[2023-07-07 14:51:56,965] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", - "[2023-07-07 14:51:56,965] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", - "[2023-07-07 14:51:56,966] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", - "[2023-07-07 14:51:56,966] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", - "[2023-07-07 14:51:56,967] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", - "[2023-07-07 14:51:56,968] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", - "[2023-07-07 14:51:56,968] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", - "[2023-07-07 14:51:56,969] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", - "[2023-07-07 14:51:56,969] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", - "[2023-07-07 14:51:56,970] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", - "[2023-07-07 14:51:56,971] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", - "[2023-07-07 14:51:56,971] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", - "[2023-07-07 14:51:56,972] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", - "[2023-07-07 14:51:57,006] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:51:57,006] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", - "[2023-07-07 14:51:57,006] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:51:57,006] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", - "[2023-07-07 14:51:57,006] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", - "[2023-07-07 14:51:57,006] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:51:57,006] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", - "[2023-07-07 14:51:57,007] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", - "[2023-07-07 14:51:57,007] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", + "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 415395, Operator ID: 55bc5d5a-ab22-4beb-ae77-20754cc8d009)\u001b[39m\n", + "[2023-07-11 15:12:41,079] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", + "[2023-07-11 15:12:41,079] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", + "[2023-07-11 15:12:41,080] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", + "[2023-07-11 15:12:41,081] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", + "[2023-07-11 15:12:41,081] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", + "[2023-07-11 15:12:41,082] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", + "[2023-07-11 15:12:41,082] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", + "[2023-07-11 15:12:41,083] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", + "[2023-07-11 15:12:41,083] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", + "[2023-07-11 15:12:41,084] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", + "[2023-07-11 15:12:41,085] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", + "[2023-07-11 15:12:41,085] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", + "[2023-07-11 15:12:41,086] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", + "[2023-07-11 15:12:41,086] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", + "[2023-07-11 15:12:41,087] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", + "[2023-07-11 15:12:41,087] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", + "[2023-07-11 15:12:41,088] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", + "[2023-07-11 15:12:41,088] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", + "[2023-07-11 15:12:41,089] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", + "[2023-07-11 15:12:41,090] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", + "[2023-07-11 15:12:41,090] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", + "[2023-07-11 15:12:41,091] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", + "[2023-07-11 15:12:41,091] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", + "[2023-07-11 15:12:41,092] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", + "[2023-07-11 15:12:41,092] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", + "[2023-07-11 15:12:41,093] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", + "[2023-07-11 15:12:41,093] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", + "[2023-07-11 15:12:41,094] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", + "[2023-07-11 15:12:41,095] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", + "[2023-07-11 15:12:41,095] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", + "[2023-07-11 15:12:41,096] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", + "[2023-07-11 15:12:41,096] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", + "[2023-07-11 15:12:41,097] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", + "[2023-07-11 15:12:41,097] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", + "[2023-07-11 15:12:41,098] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", + "[2023-07-11 15:12:41,099] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", + "[2023-07-11 15:12:41,099] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", + "[2023-07-11 15:12:41,100] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", + "[2023-07-11 15:12:41,100] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", + "[2023-07-11 15:12:41,101] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", + "[2023-07-11 15:12:41,101] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", + "[2023-07-11 15:12:41,102] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", + "[2023-07-11 15:12:41,102] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", + "[2023-07-11 15:12:41,103] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", + "[2023-07-11 15:12:41,104] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", + "[2023-07-11 15:12:41,105] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", + "[2023-07-11 15:12:41,105] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", + "[2023-07-11 15:12:41,106] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", + "[2023-07-11 15:12:41,106] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", + "[2023-07-11 15:12:41,107] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", + "[2023-07-11 15:12:41,107] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", + "[2023-07-11 15:12:41,108] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", + "[2023-07-11 15:12:41,109] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", + "[2023-07-11 15:12:41,109] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", + "[2023-07-11 15:12:41,110] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", + "[2023-07-11 15:12:41,110] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", + "[2023-07-11 15:12:41,111] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", + "[2023-07-11 15:12:41,112] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", + "[2023-07-11 15:12:41,112] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", + "[2023-07-11 15:12:41,113] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", + "[2023-07-11 15:12:41,114] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", + "[2023-07-11 15:12:41,115] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", + "[2023-07-11 15:12:41,116] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", + "[2023-07-11 15:12:41,117] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", + "[2023-07-11 15:12:41,117] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", + "[2023-07-11 15:12:41,118] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", + "[2023-07-11 15:12:41,118] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", + "[2023-07-11 15:12:41,119] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", + "[2023-07-11 15:12:41,148] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:12:41,148] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", + "[2023-07-11 15:12:41,148] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:12:41,148] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", + "[2023-07-11 15:12:41,148] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", + "[2023-07-11 15:12:41,148] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:12:41,148] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", + "[2023-07-11 15:12:41,148] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", + "[2023-07-11 15:12:41,148] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", "\u001b[34mDone performing execution of operator DICOMSegmentationWriterOperator\n", "\u001b[39m\n", - "[2023-07-07 14:51:57,069] [INFO] (app.App) - End run\n" + "[2023-07-11 15:12:41,213] [INFO] (app.App) - End run\n" ] } ], @@ -1585,33 +1584,33 @@ "INFO:root:End compose\n", "INFO:app.App:Begin run\n", "\u001b[34mGoing to initiate execution of operator DICOMDataLoaderOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 213753, Operator ID: 8be134c0-57ee-4298-a113-6d94da804902)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 415499, Operator ID: 92e19de6-792a-4fc9-9842-ddf5b2f5e177)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMDataLoaderOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesSelectorOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 213753, Operator ID: 85742313-fc70-45ee-b5cb-f65e47e8e651)\u001b[39m\n", - "[2023-07-07 14:52:03,789] [INFO] (root) - Finding series for Selection named: CT Series\n", - "[2023-07-07 14:52:03,790] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", + "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 415499, Operator ID: 3e394427-50ab-4620-9f87-3fd7214dccff)\u001b[39m\n", + "[2023-07-11 15:12:47,191] [INFO] (root) - Finding series for Selection named: CT Series\n", + "[2023-07-11 15:12:47,191] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", " # of series: 1\n", - "[2023-07-07 14:52:03,790] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", - "[2023-07-07 14:52:03,790] [INFO] (root) - On attribute: 'StudyDescription' to match value: '(.*?)'\n", - "[2023-07-07 14:52:03,790] [INFO] (root) - Series attribute StudyDescription value: CT ABDOMEN W IV CONTRAST\n", - "[2023-07-07 14:52:03,790] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 14:52:03,790] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", - "[2023-07-07 14:52:03,790] [INFO] (root) - Series attribute Modality value: CT\n", - "[2023-07-07 14:52:03,790] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 14:52:03,790] [INFO] (root) - On attribute: 'SeriesDescription' to match value: '(.*?)'\n", - "[2023-07-07 14:52:03,790] [INFO] (root) - Series attribute SeriesDescription value: ABD/PANC 3.0 B31f\n", - "[2023-07-07 14:52:03,790] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 14:52:03,790] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "[2023-07-11 15:12:47,191] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "[2023-07-11 15:12:47,192] [INFO] (root) - On attribute: 'StudyDescription' to match value: '(.*?)'\n", + "[2023-07-11 15:12:47,192] [INFO] (root) - Series attribute StudyDescription value: CT ABDOMEN W IV CONTRAST\n", + "[2023-07-11 15:12:47,192] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 15:12:47,192] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", + "[2023-07-11 15:12:47,192] [INFO] (root) - Series attribute Modality value: CT\n", + "[2023-07-11 15:12:47,192] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 15:12:47,192] [INFO] (root) - On attribute: 'SeriesDescription' to match value: '(.*?)'\n", + "[2023-07-11 15:12:47,192] [INFO] (root) - Series attribute SeriesDescription value: ABD/PANC 3.0 B31f\n", + "[2023-07-11 15:12:47,192] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 15:12:47,192] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", "\u001b[34mDone performing execution of operator DICOMSeriesSelectorOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesToVolumeOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 213753, Operator ID: b5a772e7-e967-4f9c-92b7-202aefbf68e0)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 415499, Operator ID: 931ae3c0-9f74-4c40-9869-aa6f022c09ef)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMSeriesToVolumeOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator MonaiBundleInferenceOperator\u001b[39m\n", - "\u001b[32mExecuting operator MonaiBundleInferenceOperator \u001b[33m(Process ID: 213753, Operator ID: f3be3540-31fe-413b-9503-44a8ceb2f67e)\u001b[39m\n", + "\u001b[32mExecuting operator MonaiBundleInferenceOperator \u001b[33m(Process ID: 415499, Operator ID: ba4c00ca-bee2-4ea3-b8e7-dbf55c702025)\u001b[39m\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:321: FutureWarning: monai.transforms.io.dictionary LoadImaged.__init__:image_only: Current default value of argument `image_only=False` has been deprecated since version 1.1. It will be changed to `image_only=True` in version 1.3.\n", " warn_deprecated(argname, msg, warning_category)\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:321: FutureWarning: monai.transforms.io.dictionary SaveImaged.__init__:resample: Current default value of argument `resample=True` has been deprecated since version 1.1. It will be changed to `resample=False` in version 1.3.\n", @@ -1619,197 +1618,197 @@ "\u001b[34mDone performing execution of operator MonaiBundleInferenceOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator MonaiBundleInferenceOperator\u001b[39m\n", - "\u001b[32mExecuting operator MonaiBundleInferenceOperator \u001b[33m(Process ID: 213753, Operator ID: 133d0901-36ac-4c16-8061-8b68a08ae38d)\u001b[39m\n", + "\u001b[32mExecuting operator MonaiBundleInferenceOperator \u001b[33m(Process ID: 415499, Operator ID: c4a1f591-d435-4f61-b068-78f639a0e643)\u001b[39m\n", "\u001b[34mDone performing execution of operator MonaiBundleInferenceOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSegmentationWriterOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 213753, Operator ID: 57f91f83-69ea-44f7-a224-c0ca8315c047)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 415499, Operator ID: ed862326-b4ce-476c-b56a-7eb4be16e8a4)\u001b[39m\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/highdicom/valuerep.py:54: UserWarning: The string \"C3N-00198\" is unlikely to represent the intended person name since it contains only a single component. Construct a person name according to the format in described in http://dicom.nema.org/dicom/2013/output/chtml/part05/sect_6.2.html#sect_6.2.1.2, or, in pydicom 2.2.0 or later, use the pydicom.valuerep.PersonName.from_named_components() method to construct the person name correctly. If a single-component name is really intended, add a trailing caret character to disambiguate the name.\n", " warnings.warn(\n", - "[2023-07-07 14:53:37,171] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", + "[2023-07-11 15:14:20,673] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR UL.\n", " warnings.warn(msg)\n", "/home/mqin/src/monai-deploy-app-sdk/.venv05/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR US.\n", " warnings.warn(msg)\n", - "[2023-07-07 14:53:37,173] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", - "[2023-07-07 14:53:37,173] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", - "[2023-07-07 14:53:37,174] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", - "[2023-07-07 14:53:37,174] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", - "[2023-07-07 14:53:37,175] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", - "[2023-07-07 14:53:37,176] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", - "[2023-07-07 14:53:37,176] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", - "[2023-07-07 14:53:37,177] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", - "[2023-07-07 14:53:37,177] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", - "[2023-07-07 14:53:37,178] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", - "[2023-07-07 14:53:37,178] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", - "[2023-07-07 14:53:37,179] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", - "[2023-07-07 14:53:37,179] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", - "[2023-07-07 14:53:37,180] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", - "[2023-07-07 14:53:37,181] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", - "[2023-07-07 14:53:37,181] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", - "[2023-07-07 14:53:37,182] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", - "[2023-07-07 14:53:37,182] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", - "[2023-07-07 14:53:37,183] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", - "[2023-07-07 14:53:37,184] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", - "[2023-07-07 14:53:37,184] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", - "[2023-07-07 14:53:37,185] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", - "[2023-07-07 14:53:37,185] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", - "[2023-07-07 14:53:37,186] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", - "[2023-07-07 14:53:37,186] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", - "[2023-07-07 14:53:37,187] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", - "[2023-07-07 14:53:37,188] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", - "[2023-07-07 14:53:37,188] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", - "[2023-07-07 14:53:37,189] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", - "[2023-07-07 14:53:37,189] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", - "[2023-07-07 14:53:37,190] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", - "[2023-07-07 14:53:37,191] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", - "[2023-07-07 14:53:37,191] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", - "[2023-07-07 14:53:37,192] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", - "[2023-07-07 14:53:37,192] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", - "[2023-07-07 14:53:37,193] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", - "[2023-07-07 14:53:37,194] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", - "[2023-07-07 14:53:37,194] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", - "[2023-07-07 14:53:37,195] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", - "[2023-07-07 14:53:37,195] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", - "[2023-07-07 14:53:37,196] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", - "[2023-07-07 14:53:37,196] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", - "[2023-07-07 14:53:37,197] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", - "[2023-07-07 14:53:37,198] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", - "[2023-07-07 14:53:37,198] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", - "[2023-07-07 14:53:37,199] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", - "[2023-07-07 14:53:37,200] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", - "[2023-07-07 14:53:37,200] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", - "[2023-07-07 14:53:37,201] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", - "[2023-07-07 14:53:37,202] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", - "[2023-07-07 14:53:37,202] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", - "[2023-07-07 14:53:37,203] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", - "[2023-07-07 14:53:37,203] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", - "[2023-07-07 14:53:37,204] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", - "[2023-07-07 14:53:37,205] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", - "[2023-07-07 14:53:37,205] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", - "[2023-07-07 14:53:37,206] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", - "[2023-07-07 14:53:37,206] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", - "[2023-07-07 14:53:37,207] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", - "[2023-07-07 14:53:37,208] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", - "[2023-07-07 14:53:37,208] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", - "[2023-07-07 14:53:37,209] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", - "[2023-07-07 14:53:37,209] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", - "[2023-07-07 14:53:37,210] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", - "[2023-07-07 14:53:37,211] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", - "[2023-07-07 14:53:37,211] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", - "[2023-07-07 14:53:37,212] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", - "[2023-07-07 14:53:37,212] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", - "[2023-07-07 14:53:37,213] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", - "[2023-07-07 14:53:37,213] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", - "[2023-07-07 14:53:37,214] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", - "[2023-07-07 14:53:37,215] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", - "[2023-07-07 14:53:37,215] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", - "[2023-07-07 14:53:37,216] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", - "[2023-07-07 14:53:37,216] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", - "[2023-07-07 14:53:37,217] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", - "[2023-07-07 14:53:37,218] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", - "[2023-07-07 14:53:37,218] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", - "[2023-07-07 14:53:37,219] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", - "[2023-07-07 14:53:37,219] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", - "[2023-07-07 14:53:37,220] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", - "[2023-07-07 14:53:37,221] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", - "[2023-07-07 14:53:37,221] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", - "[2023-07-07 14:53:37,222] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", - "[2023-07-07 14:53:37,222] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", - "[2023-07-07 14:53:37,223] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", - "[2023-07-07 14:53:37,264] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:53:37,264] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", - "[2023-07-07 14:53:37,264] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:53:37,264] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", - "[2023-07-07 14:53:37,264] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", - "[2023-07-07 14:53:37,264] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:53:37,264] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", - "[2023-07-07 14:53:37,264] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", - "[2023-07-07 14:53:37,265] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", + "[2023-07-11 15:14:20,675] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", + "[2023-07-11 15:14:20,675] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", + "[2023-07-11 15:14:20,676] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", + "[2023-07-11 15:14:20,676] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", + "[2023-07-11 15:14:20,677] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", + "[2023-07-11 15:14:20,677] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", + "[2023-07-11 15:14:20,678] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", + "[2023-07-11 15:14:20,679] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", + "[2023-07-11 15:14:20,679] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", + "[2023-07-11 15:14:20,680] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", + "[2023-07-11 15:14:20,680] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", + "[2023-07-11 15:14:20,681] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", + "[2023-07-11 15:14:20,681] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", + "[2023-07-11 15:14:20,682] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", + "[2023-07-11 15:14:20,682] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", + "[2023-07-11 15:14:20,683] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", + "[2023-07-11 15:14:20,684] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", + "[2023-07-11 15:14:20,684] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", + "[2023-07-11 15:14:20,685] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", + "[2023-07-11 15:14:20,685] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", + "[2023-07-11 15:14:20,686] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", + "[2023-07-11 15:14:20,686] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", + "[2023-07-11 15:14:20,687] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", + "[2023-07-11 15:14:20,687] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", + "[2023-07-11 15:14:20,688] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", + "[2023-07-11 15:14:20,689] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", + "[2023-07-11 15:14:20,689] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", + "[2023-07-11 15:14:20,690] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", + "[2023-07-11 15:14:20,690] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", + "[2023-07-11 15:14:20,691] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", + "[2023-07-11 15:14:20,691] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", + "[2023-07-11 15:14:20,692] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", + "[2023-07-11 15:14:20,692] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", + "[2023-07-11 15:14:20,693] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", + "[2023-07-11 15:14:20,694] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", + "[2023-07-11 15:14:20,694] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", + "[2023-07-11 15:14:20,695] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", + "[2023-07-11 15:14:20,695] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", + "[2023-07-11 15:14:20,696] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", + "[2023-07-11 15:14:20,696] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", + "[2023-07-11 15:14:20,697] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", + "[2023-07-11 15:14:20,697] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", + "[2023-07-11 15:14:20,698] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", + "[2023-07-11 15:14:20,699] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", + "[2023-07-11 15:14:20,699] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", + "[2023-07-11 15:14:20,700] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", + "[2023-07-11 15:14:20,700] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", + "[2023-07-11 15:14:20,701] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", + "[2023-07-11 15:14:20,701] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", + "[2023-07-11 15:14:20,702] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", + "[2023-07-11 15:14:20,702] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", + "[2023-07-11 15:14:20,703] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", + "[2023-07-11 15:14:20,704] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", + "[2023-07-11 15:14:20,704] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", + "[2023-07-11 15:14:20,705] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", + "[2023-07-11 15:14:20,705] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", + "[2023-07-11 15:14:20,706] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", + "[2023-07-11 15:14:20,707] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", + "[2023-07-11 15:14:20,707] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", + "[2023-07-11 15:14:20,708] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", + "[2023-07-11 15:14:20,708] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", + "[2023-07-11 15:14:20,709] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", + "[2023-07-11 15:14:20,710] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", + "[2023-07-11 15:14:20,710] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", + "[2023-07-11 15:14:20,711] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", + "[2023-07-11 15:14:20,711] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", + "[2023-07-11 15:14:20,712] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", + "[2023-07-11 15:14:20,712] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", + "[2023-07-11 15:14:20,713] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", + "[2023-07-11 15:14:20,713] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", + "[2023-07-11 15:14:20,714] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", + "[2023-07-11 15:14:20,715] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", + "[2023-07-11 15:14:20,715] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", + "[2023-07-11 15:14:20,716] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", + "[2023-07-11 15:14:20,716] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", + "[2023-07-11 15:14:20,717] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", + "[2023-07-11 15:14:20,717] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", + "[2023-07-11 15:14:20,718] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", + "[2023-07-11 15:14:20,718] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", + "[2023-07-11 15:14:20,719] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", + "[2023-07-11 15:14:20,719] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", + "[2023-07-11 15:14:20,720] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", + "[2023-07-11 15:14:20,721] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", + "[2023-07-11 15:14:20,721] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", + "[2023-07-11 15:14:20,722] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", + "[2023-07-11 15:14:20,722] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", + "[2023-07-11 15:14:20,765] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:14:20,765] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", + "[2023-07-11 15:14:20,765] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:14:20,765] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", + "[2023-07-11 15:14:20,765] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", + "[2023-07-11 15:14:20,765] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:14:20,765] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", + "[2023-07-11 15:14:20,765] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", + "[2023-07-11 15:14:20,766] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", "\u001b[34mDone performing execution of operator DICOMSegmentationWriterOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSegmentationWriterOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 213753, Operator ID: 25caa3a9-8691-413b-b0ad-bd60819c8a13)\u001b[39m\n", - "[2023-07-07 14:53:39,287] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", - "[2023-07-07 14:53:39,287] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", - "[2023-07-07 14:53:39,288] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", - "[2023-07-07 14:53:39,289] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", - "[2023-07-07 14:53:39,289] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", - "[2023-07-07 14:53:39,290] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", - "[2023-07-07 14:53:39,291] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", - "[2023-07-07 14:53:39,291] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", - "[2023-07-07 14:53:39,292] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", - "[2023-07-07 14:53:39,292] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", - "[2023-07-07 14:53:39,293] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", - "[2023-07-07 14:53:39,294] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", - "[2023-07-07 14:53:39,294] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", - "[2023-07-07 14:53:39,295] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", - "[2023-07-07 14:53:39,295] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", - "[2023-07-07 14:53:39,296] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", - "[2023-07-07 14:53:39,296] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", - "[2023-07-07 14:53:39,297] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", - "[2023-07-07 14:53:39,298] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", - "[2023-07-07 14:53:39,298] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", - "[2023-07-07 14:53:39,299] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", - "[2023-07-07 14:53:39,299] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", - "[2023-07-07 14:53:39,300] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", - "[2023-07-07 14:53:39,301] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", - "[2023-07-07 14:53:39,302] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", - "[2023-07-07 14:53:39,302] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", - "[2023-07-07 14:53:39,303] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", - "[2023-07-07 14:53:39,303] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", - "[2023-07-07 14:53:39,304] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", - "[2023-07-07 14:53:39,305] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", - "[2023-07-07 14:53:39,305] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", - "[2023-07-07 14:53:39,306] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", - "[2023-07-07 14:53:39,306] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", - "[2023-07-07 14:53:39,307] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", - "[2023-07-07 14:53:39,308] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", - "[2023-07-07 14:53:39,308] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", - "[2023-07-07 14:53:39,309] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", - "[2023-07-07 14:53:39,309] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", - "[2023-07-07 14:53:39,310] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", - "[2023-07-07 14:53:39,311] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", - "[2023-07-07 14:53:39,311] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", - "[2023-07-07 14:53:39,312] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", - "[2023-07-07 14:53:39,312] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", - "[2023-07-07 14:53:39,313] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", - "[2023-07-07 14:53:39,313] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", - "[2023-07-07 14:53:39,314] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", - "[2023-07-07 14:53:39,315] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", - "[2023-07-07 14:53:39,315] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", - "[2023-07-07 14:53:39,316] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", - "[2023-07-07 14:53:39,316] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", - "[2023-07-07 14:53:39,317] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", - "[2023-07-07 14:53:39,318] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", - "[2023-07-07 14:53:39,318] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", - "[2023-07-07 14:53:39,319] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", - "[2023-07-07 14:53:39,319] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", - "[2023-07-07 14:53:39,320] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", - "[2023-07-07 14:53:39,320] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", - "[2023-07-07 14:53:39,321] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", - "[2023-07-07 14:53:39,322] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", - "[2023-07-07 14:53:39,322] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", - "[2023-07-07 14:53:39,323] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", - "[2023-07-07 14:53:39,323] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", - "[2023-07-07 14:53:39,324] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", - "[2023-07-07 14:53:39,325] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", - "[2023-07-07 14:53:39,325] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", - "[2023-07-07 14:53:39,326] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", - "[2023-07-07 14:53:39,326] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", - "[2023-07-07 14:53:39,327] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", - "[2023-07-07 14:53:39,361] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:53:39,361] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", - "[2023-07-07 14:53:39,361] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:53:39,361] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", - "[2023-07-07 14:53:39,361] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", - "[2023-07-07 14:53:39,361] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 14:53:39,361] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", - "[2023-07-07 14:53:39,361] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", - "[2023-07-07 14:53:39,361] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", + "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 415499, Operator ID: 966974d2-9f3a-45f7-a997-eeaa979bd8a0)\u001b[39m\n", + "[2023-07-11 15:14:22,757] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", + "[2023-07-11 15:14:22,758] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", + "[2023-07-11 15:14:22,759] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", + "[2023-07-11 15:14:22,759] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", + "[2023-07-11 15:14:22,760] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", + "[2023-07-11 15:14:22,760] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", + "[2023-07-11 15:14:22,761] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", + "[2023-07-11 15:14:22,761] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", + "[2023-07-11 15:14:22,762] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", + "[2023-07-11 15:14:22,762] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", + "[2023-07-11 15:14:22,763] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", + "[2023-07-11 15:14:22,764] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", + "[2023-07-11 15:14:22,764] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", + "[2023-07-11 15:14:22,765] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", + "[2023-07-11 15:14:22,765] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", + "[2023-07-11 15:14:22,766] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", + "[2023-07-11 15:14:22,766] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", + "[2023-07-11 15:14:22,767] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", + "[2023-07-11 15:14:22,767] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", + "[2023-07-11 15:14:22,768] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", + "[2023-07-11 15:14:22,769] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", + "[2023-07-11 15:14:22,769] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", + "[2023-07-11 15:14:22,770] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", + "[2023-07-11 15:14:22,770] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", + "[2023-07-11 15:14:22,771] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", + "[2023-07-11 15:14:22,771] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", + "[2023-07-11 15:14:22,772] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", + "[2023-07-11 15:14:22,772] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", + "[2023-07-11 15:14:22,773] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", + "[2023-07-11 15:14:22,774] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", + "[2023-07-11 15:14:22,774] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", + "[2023-07-11 15:14:22,775] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", + "[2023-07-11 15:14:22,775] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", + "[2023-07-11 15:14:22,776] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", + "[2023-07-11 15:14:22,777] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", + "[2023-07-11 15:14:22,777] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", + "[2023-07-11 15:14:22,778] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", + "[2023-07-11 15:14:22,778] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", + "[2023-07-11 15:14:22,779] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", + "[2023-07-11 15:14:22,780] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", + "[2023-07-11 15:14:22,780] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", + "[2023-07-11 15:14:22,781] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", + "[2023-07-11 15:14:22,781] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", + "[2023-07-11 15:14:22,782] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", + "[2023-07-11 15:14:22,782] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", + "[2023-07-11 15:14:22,783] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", + "[2023-07-11 15:14:22,783] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", + "[2023-07-11 15:14:22,784] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", + "[2023-07-11 15:14:22,784] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", + "[2023-07-11 15:14:22,785] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", + "[2023-07-11 15:14:22,786] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", + "[2023-07-11 15:14:22,786] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", + "[2023-07-11 15:14:22,787] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", + "[2023-07-11 15:14:22,787] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", + "[2023-07-11 15:14:22,788] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", + "[2023-07-11 15:14:22,788] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", + "[2023-07-11 15:14:22,789] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", + "[2023-07-11 15:14:22,789] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", + "[2023-07-11 15:14:22,790] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", + "[2023-07-11 15:14:22,791] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", + "[2023-07-11 15:14:22,791] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", + "[2023-07-11 15:14:22,792] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", + "[2023-07-11 15:14:22,792] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", + "[2023-07-11 15:14:22,793] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", + "[2023-07-11 15:14:22,793] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", + "[2023-07-11 15:14:22,794] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", + "[2023-07-11 15:14:22,794] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", + "[2023-07-11 15:14:22,795] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", + "[2023-07-11 15:14:22,829] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:14:22,829] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", + "[2023-07-11 15:14:22,830] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:14:22,830] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", + "[2023-07-11 15:14:22,830] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", + "[2023-07-11 15:14:22,830] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 15:14:22,830] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", + "[2023-07-11 15:14:22,830] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", + "[2023-07-11 15:14:22,830] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", "\u001b[34mDone performing execution of operator DICOMSegmentationWriterOperator\n", "\u001b[39m\n", - "[2023-07-07 14:53:39,424] [INFO] (app.App) - End run\n" + "[2023-07-11 15:14:22,894] [INFO] (app.App) - End run\n" ] } ], @@ -1828,12 +1827,16 @@ "name": "stdout", "output_type": "stream", "text": [ - "1.2.826.0.1.3680043.10.511.3.11231444010124776175218536511663543.dcm\n", - "1.2.826.0.1.3680043.10.511.3.11779019635288615017320261444184585.dcm\n", - "1.2.826.0.1.3680043.10.511.3.11927807764923034176934830784797996.dcm\n", - "1.2.826.0.1.3680043.10.511.3.26756833125967779911222791720326843.dcm\n", - "1.2.826.0.1.3680043.10.511.3.41468577108021529587933891221927885.dcm\n", - "1.2.826.0.1.3680043.10.511.3.94363520267823963721211927563964890.dcm\n" + "1.2.826.0.1.3680043.10.511.3.12266592655762762073286392126062966.dcm\n", + "1.2.826.0.1.3680043.10.511.3.15339500169092417659022541512329247.dcm\n", + "1.2.826.0.1.3680043.10.511.3.24697193551638784716713524677677957.dcm\n", + "1.2.826.0.1.3680043.10.511.3.37934837791260998209087437259252912.dcm\n", + "1.2.826.0.1.3680043.10.511.3.50237025785527161602225904410697639.dcm\n", + "1.2.826.0.1.3680043.10.511.3.54977758827214805472045204451009422.dcm\n", + "1.2.826.0.1.3680043.10.511.3.67667687028841198465134117732621674.dcm\n", + "1.2.826.0.1.3680043.10.511.3.71788865120022471953181030405970912.dcm\n", + "1.2.826.0.1.3680043.10.511.3.84214980859732118016879201737849492.dcm\n", + "1.2.826.0.1.3680043.10.511.3.97339166683317960538431021654501451.dcm\n" ] } ], @@ -1866,320 +1869,454 @@ "name": "stdout", "output_type": "stream", "text": [ - "[2023-07-07 14:53:46,381] [INFO] (root) - Begin compose\n", - "[2023-07-07 14:53:46,386] [INFO] (root) - End compose\n", - "Building MONAI Application Package... \\\u001b[1A\u001b[1B\u001b[0G\u001b[?25l[+] Building 0.0s (0/0) \n", - "\u001b[?25|\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.0s (0/0) \n", - "\u001b[?25/\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.1s (4/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "[2023-07-11 15:14:29,338] [INFO] (root) - Begin compose\n", + "[2023-07-11 15:14:29,343] [INFO] (root) - End compose\n", + "Building MONAI Application Package... -\u001b[1A\u001b[1B\u001b[0G\u001b[?25l[+] Building 0.0s (0/1) \n", + "\u001b[?25h\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.1s (2/2) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.3s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m => [internal] load build context 0.1s\n", - "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.3s (4/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + " => => transferring context: 23B 0.1s\n", + "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.4s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m => [internal] load build context 0.2s\n", - " => => transferring context: 12.19MB 0.1s\n", - "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.4s (4/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + " => => transferring context: 18.10MB 0.2s\n", + "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.5s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m => [internal] load build context 0.3s\n", - " => => transferring context: 25.67MB 0.3s\n", - "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.6s (4/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + " => => transferring context: 29.67MB 0.3s\n", + "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 0.6s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 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=> transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m => [internal] load build context 1.9s\n", + " => => transferring context: 210.04MB 1.9s\n", + "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.2s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m => [internal] load build context 2.0s\n", - " => => transferring 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"\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m => [internal] load build context 2.4s\n", - " => => transferring context: 358.87MB 2.3s\n", - "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.6s (4/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + " => => transferring context: 266.80MB 2.4s\n", + "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.7s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for 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[internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m => [internal] load build context 2.6s\n", - " => => transferring context: 394.01MB 2.5s\n", - "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 2.8s (4/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + " => => transferring context: 286.44MB 2.6s\n", + "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.0s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 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"\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.8s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m => [internal] load build context 3.6s\n", - " => => transferring context: 536.25MB 3.5s\n", - "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 3.8s (4/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + " => => 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from dockerfile 0.0s\n", + "\u001b[0m => [internal] load build context 3.8s\n", + " => => transferring context: 415.11MB 3.7s\n", + "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.1s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m => [internal] load build context 3.8s\n", - " => => transferring context: 567.95MB 3.7s\n", - "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.0s (4/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[0m => [internal] load build context 3.9s\n", + " => => transferring context: 425.67MB 3.9s\n", + "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.2s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m => [internal] load build context 3.9s\n", - " => => transferring context: 583.03MB 3.8s\n", - "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.1s (4/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[0m => [internal] load build context 4.0s\n", + " => => transferring context: 449.50MB 4.0s\n", + "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.3s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m => [internal] load build context 4.0s\n", - " => => transferring context: 599.84MB 4.0s\n", - "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.3s (4/19) \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[0m => [internal] load build context 4.1s\n", + " => => transferring context: 460.48MB 4.1s\n", + "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.4s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m => [internal] load build context 4.3s\n", + " => => transferring context: 469.79MB 4.2s\n", + "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.6s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m => [internal] load build context 4.4s\n", + " => => transferring context: 479.85MB 4.4s\n", + "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.7s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m => [internal] load build context 4.6s\n", + " => => transferring context: 489.29MB 4.5s\n", + "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.8s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m => [internal] load build context 4.2s\n", - " => => transferring context: 615.90MB 4.1s\n", - "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.4s (20/20) \n", - "\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m => [internal] load build context 4.7s\n", + " => => transferring context: 512.13MB 4.6s\n", + "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.9s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m => [internal] load build context 4.8s\n", + " => => transferring context: 524.03MB 4.7s\n", + "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.1s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m => [internal] load build context 4.9s\n", + " => => transferring context: 534.71MB 4.9s\n", + "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.2s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 4.2s\n", - "\u001b[0m\u001b[34m => => transferring context: 636.39MB 4.1s\n", + "\u001b[0m => [internal] load build context 5.1s\n", + " => => transferring context: 561.75MB 5.0s\n", + "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.3s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m => [internal] load build context 5.2s\n", + " => => transferring context: 575.72MB 5.1s\n", + "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.4s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m => [internal] load build context 5.3s\n", + " => => transferring context: 587.81MB 5.2s\n", + "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.6s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m => [internal] load build context 5.4s\n", + " => => transferring context: 600.43MB 5.4s\n", + "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.7s (4/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m => [internal] load build context 5.6s\n", + " => => transferring context: 616.00MB 5.5s\n", + "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 5.8s (12/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.0s (13/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", @@ -2188,25 +2325,550 @@ "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [11/15] RUN echo \"User site package location: $(python3 -m sit 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [12/15] COPY ./map/app.json /etc/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [13/15] COPY ./map/pkg.json /etc/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [14/15] COPY ./app /opt/monai/app 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [15/15] WORKDIR /var/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => exporting to image 0.0s\n", - "\u001b[0m\u001b[34m => => exporting layers 0.0s\n", - "\u001b[0m\u001b[34m => => writing image sha256:b58b68c777ba1bf2fe855e6f510235388f33e086b53a9 0.0s\n", - "\u001b[0m\u001b[34m => => naming to docker.io/library/my_app:latest 0.0s\n", - "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 4.5s (20/20) FINISHED \n", - "\u001b[34m => [internal] load build definition from dockerfile 0.0s\n", + "\u001b[0m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.2s\n", + "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.1s (13/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.3s\n", + "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.3s (13/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.5s\n", + "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.4s (13/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.6s\n", + "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.6s (13/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.8s\n", + "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.7s (13/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 0.9s\n", + "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 6.9s (13/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 1.1s\n", + "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.0s (13/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 1.2s\n", + "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.2s (13/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 1.4s\n", + "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.3s (13/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 1.5s\n", + "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.5s (13/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 1.7s\n", + "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.6s (13/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 1.8s\n", + "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.8s (13/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 2.0s\n", + "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 7.9s (13/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 2.1s\n", + "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.1s (13/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 2.3s\n", + "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.2s (13/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 2.4s\n", + "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.4s (13/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 2.6s\n", + "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.5s (13/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 2.7s\n", + "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.7s (13/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 2.9s\n", + "\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 8.8s (14/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 2.9s\n", + "\u001b[0m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.1s\n", + "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.0s (14/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 2.9s\n", + "\u001b[0m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.3s\n", + "\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.1s (14/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 2.9s\n", + "\u001b[0m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.4s\n", + "\u001b[2m => => # User site package location: /root/.local/lib/python3.8/site-packages \n", + "\u001b[0m\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.2s (15/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 2.9s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m => [12/15] COPY ./map/app.json /etc/monai/ 0.0s\n", + "\u001b[?25/\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.4s (16/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 2.9s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.5s (17/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 2.9s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[?25-\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.6s (18/19) \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", + "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 2.9s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.7s (19/20) \n", + "\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 2.9s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", + "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.1s\n", + "\u001b[0m => exporting to image 0.0s\n", + " => => exporting layers 0.0s\n", + "\u001b[?25\\\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 9.9s (19/20) \n", + "\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 2.9s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", + "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.1s\n", + "\u001b[0m => exporting to image 0.2s\n", + " => => exporting layers 0.2s\n", + "\u001b[?25|\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 10.0s (19/20) \n", + "\u001b[34m => [internal] load .dockerignore 0.1s\n", + "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", + "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 5/15] RUN mkdir -p /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 6/15] COPY ./models /opt/monai/models 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", + "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 2.9s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", + "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.1s\n", + "\u001b[0m => exporting to image 0.3s\n", + "\u001b[34m => => exporting layers 0.3s\n", + "\u001b[0m\u001b[?25h\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[1A\u001b[0G\u001b[?25l[+] Building 10.1s (20/20) FINISHED \n", + "\u001b[34m => [internal] load build definition from dockerfile 0.1s\n", "\u001b[0m\u001b[34m => => transferring dockerfile: 2.58kB 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.0s\n", + "\u001b[0m\u001b[34m => [internal] load .dockerignore 0.1s\n", "\u001b[0m\u001b[34m => => transferring context: 1.11kB 0.0s\n", "\u001b[0m\u001b[34m => [internal] load metadata for nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", "\u001b[0m\u001b[34m => [ 1/15] FROM nvcr.io/nvidia/pytorch:22.08-py3 0.0s\n", - "\u001b[0m\u001b[34m => [internal] load build context 4.2s\n", - "\u001b[0m\u001b[34m => => transferring context: 636.39MB 4.1s\n", + "\u001b[0m\u001b[34m => [internal] load build context 5.6s\n", + "\u001b[0m\u001b[34m => => transferring context: 636.39MB 5.6s\n", "\u001b[0m\u001b[34m => CACHED [ 2/15] RUN apt update && apt upgrade -y --no-install-rec 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 3/15] RUN pip install --no-cache-dir --upgrade setuptools==5 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 4/15] RUN mkdir -p /etc/monai/ && mkdir -p /opt/monai/ 0.0s\n", @@ -2215,18 +2877,18 @@ "\u001b[0m\u001b[34m => CACHED [ 7/15] COPY ./pip/requirements.txt /opt/monai/app/requirement 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 8/15] RUN curl https://globalcdn.nuget.org/packages/monai.de 0.0s\n", "\u001b[0m\u001b[34m => CACHED [ 9/15] RUN pip install --no-cache-dir --user -r /opt/monai/ap 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [11/15] RUN echo \"User site package location: $(python3 -m sit 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [12/15] COPY ./map/app.json /etc/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [13/15] COPY ./map/pkg.json /etc/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [14/15] COPY ./app /opt/monai/app 0.0s\n", - "\u001b[0m\u001b[34m => CACHED [15/15] WORKDIR /var/monai/ 0.0s\n", - "\u001b[0m\u001b[34m => exporting to image 0.0s\n", - "\u001b[0m\u001b[34m => => exporting layers 0.0s\n", - "\u001b[0m\u001b[34m => => writing image sha256:b58b68c777ba1bf2fe855e6f510235388f33e086b53a9 0.0s\n", + "\u001b[0m\u001b[34m => [10/15] COPY ./monai-deploy-app-sdk /root/.local/lib/python3.8/site-p 2.9s\n", + "\u001b[0m\u001b[34m => [11/15] RUN echo \"User site package location: $(python3 -m site --use 0.5s\n", + "\u001b[0m\u001b[34m => [12/15] COPY ./map/app.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [13/15] COPY ./map/pkg.json /etc/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => [14/15] COPY ./app /opt/monai/app 0.1s\n", + "\u001b[0m\u001b[34m => [15/15] WORKDIR /var/monai/ 0.1s\n", + "\u001b[0m\u001b[34m => exporting to image 0.3s\n", + "\u001b[0m\u001b[34m => => exporting layers 0.3s\n", + "\u001b[0m\u001b[34m => => writing image sha256:e7890463c0a4ed5543ddd6b54712fc1452b2a26e252ee 0.0s\n", "\u001b[0m\u001b[34m => => naming to docker.io/library/my_app:latest 0.0s\n", "\u001b[0m\u001b[?25Done\n", - "[2023-07-07 14:53:53,336] [INFO] (app_packager) - Successfully built my_app:latest\n" + "[2023-07-11 15:14:41,525] [INFO] (app_packager) - Successfully built my_app:latest\n" ] } ], @@ -2254,7 +2916,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "my_app latest b58b68c777ba 15 hours ago 15.6GB\n" + "my_app latest e7890463c0a4 2 seconds ago 15.6GB\n" ] } ], @@ -2289,8 +2951,8 @@ "\"my_app:latest\" found.\n", "\n", "Reading MONAI App Package manifest...\n", - "\u001b[sPreparing to copy...\u001b[?25l\u001b[u\u001b[2KCopying from container - 0B\u001b[?25h\u001b[u\u001b[2KSuccessfully copied 2.05kB to /tmp/tmpa6oazpry/app.json\n", - "\u001b[sPreparing to copy...\u001b[?25l\u001b[u\u001b[2KCopying from container - 0B\u001b[?25h\u001b[u\u001b[2KSuccessfully copied 2.56kB to /tmp/tmpa6oazpry/pkg.json\n", + "\u001b[sPreparing to copy...\u001b[?25l\u001b[u\u001b[2KCopying from container - 0B\u001b[?25h\u001b[u\u001b[2KSuccessfully copied 2.05kB to /tmp/tmp1id0fxl2/app.json\n", + "\u001b[sPreparing to copy...\u001b[?25l\u001b[u\u001b[2KCopying from container - 0B\u001b[?25h\u001b[u\u001b[2KSuccessfully copied 2.56kB to /tmp/tmp1id0fxl2/pkg.json\n", "--> Verifying if \"nvidia-docker\" is installed...\n", "\n", "/opt/conda/lib/python3.8/site-packages/scipy/__init__.py:138: UserWarning: A NumPy version >=1.16.5 and <1.23.0 is required for this version of SciPy (detected version 1.24.3)\n", @@ -2301,33 +2963,33 @@ "INFO:root:End compose\n", "INFO:__main__.App:Begin run\n", "\u001b[34mGoing to initiate execution of operator DICOMDataLoaderOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 1, Operator ID: b2900955-ddb5-4b2e-90bf-75d847b0d293)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMDataLoaderOperator \u001b[33m(Process ID: 1, Operator ID: c9b0308b-13f4-4251-a5a8-07a7212d86d9)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMDataLoaderOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesSelectorOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 1, Operator ID: 65380218-be22-418d-a854-02cb52eb6416)\u001b[39m\n", - "[2023-07-07 21:54:13,723] [INFO] (root) - Finding series for Selection named: CT Series\n", - "[2023-07-07 21:54:13,723] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", + "\u001b[32mExecuting operator DICOMSeriesSelectorOperator \u001b[33m(Process ID: 1, Operator ID: 19b48ea4-e77a-4e2b-a14b-8cffe3db0fe5)\u001b[39m\n", + "[2023-07-11 22:14:54,323] [INFO] (root) - Finding series for Selection named: CT Series\n", + "[2023-07-11 22:14:54,323] [INFO] (root) - Searching study, : 1.3.6.1.4.1.14519.5.2.1.7085.2626.822645453932810382886582736291\n", " # of series: 1\n", - "[2023-07-07 21:54:13,723] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", - "[2023-07-07 21:54:13,723] [INFO] (root) - On attribute: 'StudyDescription' to match value: '(.*?)'\n", - "[2023-07-07 21:54:13,724] [INFO] (root) - Series attribute StudyDescription value: CT ABDOMEN W IV CONTRAST\n", - "[2023-07-07 21:54:13,724] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 21:54:13,724] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", - "[2023-07-07 21:54:13,724] [INFO] (root) - Series attribute Modality value: CT\n", - "[2023-07-07 21:54:13,724] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 21:54:13,724] [INFO] (root) - On attribute: 'SeriesDescription' to match value: '(.*?)'\n", - "[2023-07-07 21:54:13,724] [INFO] (root) - Series attribute SeriesDescription value: ABD/PANC 3.0 B31f\n", - "[2023-07-07 21:54:13,724] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", - "[2023-07-07 21:54:13,724] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "[2023-07-11 22:14:54,323] [INFO] (root) - Working on series, instance UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", + "[2023-07-11 22:14:54,323] [INFO] (root) - On attribute: 'StudyDescription' to match value: '(.*?)'\n", + "[2023-07-11 22:14:54,323] [INFO] (root) - Series attribute StudyDescription value: CT ABDOMEN W IV CONTRAST\n", + "[2023-07-11 22:14:54,324] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 22:14:54,324] [INFO] (root) - On attribute: 'Modality' to match value: '(?i)CT'\n", + "[2023-07-11 22:14:54,324] [INFO] (root) - Series attribute Modality value: CT\n", + "[2023-07-11 22:14:54,324] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 22:14:54,324] [INFO] (root) - On attribute: 'SeriesDescription' to match value: '(.*?)'\n", + "[2023-07-11 22:14:54,324] [INFO] (root) - Series attribute SeriesDescription value: ABD/PANC 3.0 B31f\n", + "[2023-07-11 22:14:54,324] [INFO] (root) - Series attribute string value did not match. Try regEx.\n", + "[2023-07-11 22:14:54,324] [INFO] (root) - Selected Series, UID: 1.3.6.1.4.1.14519.5.2.1.7085.2626.119403521930927333027265674239\n", "\u001b[34mDone performing execution of operator DICOMSeriesSelectorOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSeriesToVolumeOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 1, Operator ID: 57abe031-417a-47d6-bb06-45f0651eccec)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSeriesToVolumeOperator \u001b[33m(Process ID: 1, Operator ID: 529289ce-22b3-4234-827d-95279856c062)\u001b[39m\n", "\u001b[34mDone performing execution of operator DICOMSeriesToVolumeOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator MonaiBundleInferenceOperator\u001b[39m\n", - "\u001b[32mExecuting operator MonaiBundleInferenceOperator \u001b[33m(Process ID: 1, Operator ID: d9d5d860-55dd-410a-b2f8-3bb50cbef55e)\u001b[39m\n", + "\u001b[32mExecuting operator MonaiBundleInferenceOperator \u001b[33m(Process ID: 1, Operator ID: 30aa301b-35fe-4917-9071-f1e2c83496d2)\u001b[39m\n", "/root/.local/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:321: FutureWarning: monai.transforms.io.dictionary LoadImaged.__init__:image_only: Current default value of argument `image_only=False` has been deprecated since version 1.1. It will be changed to `image_only=True` in version 1.3.\n", " warn_deprecated(argname, msg, warning_category)\n", "/root/.local/lib/python3.8/site-packages/monai/utils/deprecate_utils.py:321: FutureWarning: monai.transforms.io.dictionary SaveImaged.__init__:resample: Current default value of argument `resample=True` has been deprecated since version 1.1. It will be changed to `resample=False` in version 1.3.\n", @@ -2335,197 +2997,197 @@ "\u001b[34mDone performing execution of operator MonaiBundleInferenceOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator MonaiBundleInferenceOperator\u001b[39m\n", - "\u001b[32mExecuting operator MonaiBundleInferenceOperator \u001b[33m(Process ID: 1, Operator ID: a97bfa6c-a0f8-46cb-a36b-2aa7cd116625)\u001b[39m\n", + "\u001b[32mExecuting operator MonaiBundleInferenceOperator \u001b[33m(Process ID: 1, Operator ID: 8a4ea8e0-4734-46de-89f5-723129ec41c0)\u001b[39m\n", "\u001b[34mDone performing execution of operator MonaiBundleInferenceOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSegmentationWriterOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 1, Operator ID: d839a54f-f108-4ccf-984e-68e36be241fe)\u001b[39m\n", + "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 1, Operator ID: 7cfc0db8-c800-49f5-b44c-966dbe5337c6)\u001b[39m\n", "/root/.local/lib/python3.8/site-packages/highdicom/valuerep.py:54: UserWarning: The string \"C3N-00198\" is unlikely to represent the intended person name since it contains only a single component. Construct a person name according to the format in described in http://dicom.nema.org/dicom/2013/output/chtml/part05/sect_6.2.html#sect_6.2.1.2, or, in pydicom 2.2.0 or later, use the pydicom.valuerep.PersonName.from_named_components() method to construct the person name correctly. If a single-component name is really intended, add a trailing caret character to disambiguate the name.\n", " warnings.warn(\n", - "[2023-07-07 21:55:53,512] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", + "[2023-07-11 22:16:31,430] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", "/root/.local/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR UL.\n", " warnings.warn(msg)\n", "/root/.local/lib/python3.8/site-packages/pydicom/valuerep.py:443: UserWarning: A value of type 'int64' cannot be assigned to a tag with VR US.\n", " warnings.warn(msg)\n", - "[2023-07-07 21:55:53,518] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", - "[2023-07-07 21:55:53,519] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", - "[2023-07-07 21:55:53,521] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", - "[2023-07-07 21:55:53,523] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", - "[2023-07-07 21:55:53,524] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", - "[2023-07-07 21:55:53,526] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", - "[2023-07-07 21:55:53,527] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", - "[2023-07-07 21:55:53,528] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", - "[2023-07-07 21:55:53,529] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", - "[2023-07-07 21:55:53,531] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", - "[2023-07-07 21:55:53,532] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", - "[2023-07-07 21:55:53,533] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", - "[2023-07-07 21:55:53,534] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", - "[2023-07-07 21:55:53,535] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", - "[2023-07-07 21:55:53,536] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", - "[2023-07-07 21:55:53,537] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", - "[2023-07-07 21:55:53,538] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", - "[2023-07-07 21:55:53,538] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", - "[2023-07-07 21:55:53,539] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", - "[2023-07-07 21:55:53,540] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", - "[2023-07-07 21:55:53,540] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", - "[2023-07-07 21:55:53,541] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", - "[2023-07-07 21:55:53,542] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", - "[2023-07-07 21:55:53,543] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", - "[2023-07-07 21:55:53,543] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", - "[2023-07-07 21:55:53,544] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", - "[2023-07-07 21:55:53,545] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", - "[2023-07-07 21:55:53,546] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", - "[2023-07-07 21:55:53,546] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", - "[2023-07-07 21:55:53,547] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", - "[2023-07-07 21:55:53,548] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", - "[2023-07-07 21:55:53,548] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", - "[2023-07-07 21:55:53,549] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", - "[2023-07-07 21:55:53,550] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", - "[2023-07-07 21:55:53,550] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", - "[2023-07-07 21:55:53,551] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", - "[2023-07-07 21:55:53,552] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", - "[2023-07-07 21:55:53,552] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", - "[2023-07-07 21:55:53,553] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", - "[2023-07-07 21:55:53,553] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", - "[2023-07-07 21:55:53,554] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", - "[2023-07-07 21:55:53,555] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", - "[2023-07-07 21:55:53,555] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", - "[2023-07-07 21:55:53,556] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", - "[2023-07-07 21:55:53,557] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", - "[2023-07-07 21:55:53,557] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", - "[2023-07-07 21:55:53,558] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", - "[2023-07-07 21:55:53,559] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", - "[2023-07-07 21:55:53,559] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", - "[2023-07-07 21:55:53,560] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", - "[2023-07-07 21:55:53,561] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", - "[2023-07-07 21:55:53,561] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", - "[2023-07-07 21:55:53,562] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", - "[2023-07-07 21:55:53,562] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", - "[2023-07-07 21:55:53,563] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", - "[2023-07-07 21:55:53,564] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", - "[2023-07-07 21:55:53,565] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", - "[2023-07-07 21:55:53,565] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", - "[2023-07-07 21:55:53,566] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", - "[2023-07-07 21:55:53,567] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", - "[2023-07-07 21:55:53,567] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", - "[2023-07-07 21:55:53,568] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", - "[2023-07-07 21:55:53,569] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", - "[2023-07-07 21:55:53,569] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", - "[2023-07-07 21:55:53,570] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", - "[2023-07-07 21:55:53,571] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", - "[2023-07-07 21:55:53,571] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", - "[2023-07-07 21:55:53,572] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", - "[2023-07-07 21:55:53,573] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", - "[2023-07-07 21:55:53,574] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", - "[2023-07-07 21:55:53,574] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", - "[2023-07-07 21:55:53,575] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", - "[2023-07-07 21:55:53,575] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", - "[2023-07-07 21:55:53,576] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", - "[2023-07-07 21:55:53,577] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", - "[2023-07-07 21:55:53,577] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", - "[2023-07-07 21:55:53,578] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", - "[2023-07-07 21:55:53,579] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", - "[2023-07-07 21:55:53,579] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", - "[2023-07-07 21:55:53,580] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", - "[2023-07-07 21:55:53,581] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", - "[2023-07-07 21:55:53,581] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", - "[2023-07-07 21:55:53,582] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", - "[2023-07-07 21:55:53,583] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", - "[2023-07-07 21:55:53,583] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", - "[2023-07-07 21:55:53,584] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", - "[2023-07-07 21:55:53,623] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 21:55:53,623] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", - "[2023-07-07 21:55:53,623] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 21:55:53,623] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", - "[2023-07-07 21:55:53,623] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", - "[2023-07-07 21:55:53,624] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 21:55:53,624] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", - "[2023-07-07 21:55:53,624] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", - "[2023-07-07 21:55:53,624] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", + "[2023-07-11 22:16:31,436] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", + "[2023-07-11 22:16:31,438] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", + "[2023-07-11 22:16:31,439] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", + "[2023-07-11 22:16:31,441] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", + "[2023-07-11 22:16:31,443] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", + "[2023-07-11 22:16:31,445] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", + "[2023-07-11 22:16:31,446] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", + "[2023-07-11 22:16:31,447] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", + "[2023-07-11 22:16:31,448] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", + "[2023-07-11 22:16:31,449] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", + "[2023-07-11 22:16:31,450] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", + "[2023-07-11 22:16:31,452] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", + "[2023-07-11 22:16:31,453] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", + "[2023-07-11 22:16:31,454] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", + "[2023-07-11 22:16:31,455] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", + "[2023-07-11 22:16:31,455] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", + "[2023-07-11 22:16:31,456] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", + "[2023-07-11 22:16:31,457] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", + "[2023-07-11 22:16:31,458] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", + "[2023-07-11 22:16:31,459] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", + "[2023-07-11 22:16:31,459] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", + "[2023-07-11 22:16:31,460] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", + "[2023-07-11 22:16:31,461] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", + "[2023-07-11 22:16:31,462] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", + "[2023-07-11 22:16:31,463] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", + "[2023-07-11 22:16:31,463] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", + "[2023-07-11 22:16:31,464] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", + "[2023-07-11 22:16:31,465] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", + "[2023-07-11 22:16:31,465] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", + "[2023-07-11 22:16:31,466] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", + "[2023-07-11 22:16:31,467] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", + "[2023-07-11 22:16:31,467] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", + "[2023-07-11 22:16:31,468] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", + "[2023-07-11 22:16:31,468] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", + "[2023-07-11 22:16:31,469] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", + "[2023-07-11 22:16:31,470] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", + "[2023-07-11 22:16:31,470] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", + "[2023-07-11 22:16:31,471] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", + "[2023-07-11 22:16:31,471] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", + "[2023-07-11 22:16:31,472] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", + "[2023-07-11 22:16:31,473] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", + "[2023-07-11 22:16:31,473] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", + "[2023-07-11 22:16:31,474] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", + "[2023-07-11 22:16:31,475] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", + "[2023-07-11 22:16:31,475] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", + "[2023-07-11 22:16:31,476] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", + "[2023-07-11 22:16:31,476] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", + "[2023-07-11 22:16:31,477] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", + "[2023-07-11 22:16:31,478] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", + "[2023-07-11 22:16:31,478] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", + "[2023-07-11 22:16:31,479] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", + "[2023-07-11 22:16:31,479] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", + "[2023-07-11 22:16:31,480] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", + "[2023-07-11 22:16:31,481] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", + "[2023-07-11 22:16:31,481] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", + "[2023-07-11 22:16:31,482] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", + "[2023-07-11 22:16:31,483] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", + "[2023-07-11 22:16:31,483] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", + "[2023-07-11 22:16:31,484] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", + "[2023-07-11 22:16:31,484] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", + "[2023-07-11 22:16:31,485] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", + "[2023-07-11 22:16:31,486] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", + "[2023-07-11 22:16:31,486] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", + "[2023-07-11 22:16:31,487] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", + "[2023-07-11 22:16:31,487] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", + "[2023-07-11 22:16:31,488] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", + "[2023-07-11 22:16:31,489] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", + "[2023-07-11 22:16:31,489] [INFO] (highdicom.seg.sop) - add plane #68 for segment #1\n", + "[2023-07-11 22:16:31,490] [INFO] (highdicom.seg.sop) - add plane #69 for segment #1\n", + "[2023-07-11 22:16:31,490] [INFO] (highdicom.seg.sop) - add plane #70 for segment #1\n", + "[2023-07-11 22:16:31,491] [INFO] (highdicom.seg.sop) - add plane #71 for segment #1\n", + "[2023-07-11 22:16:31,492] [INFO] (highdicom.seg.sop) - add plane #72 for segment #1\n", + "[2023-07-11 22:16:31,492] [INFO] (highdicom.seg.sop) - add plane #73 for segment #1\n", + "[2023-07-11 22:16:31,493] [INFO] (highdicom.seg.sop) - add plane #74 for segment #1\n", + "[2023-07-11 22:16:31,494] [INFO] (highdicom.seg.sop) - add plane #75 for segment #1\n", + "[2023-07-11 22:16:31,495] [INFO] (highdicom.seg.sop) - add plane #76 for segment #1\n", + "[2023-07-11 22:16:31,495] [INFO] (highdicom.seg.sop) - add plane #77 for segment #1\n", + "[2023-07-11 22:16:31,496] [INFO] (highdicom.seg.sop) - add plane #78 for segment #1\n", + "[2023-07-11 22:16:31,496] [INFO] (highdicom.seg.sop) - add plane #79 for segment #1\n", + "[2023-07-11 22:16:31,497] [INFO] (highdicom.seg.sop) - add plane #80 for segment #1\n", + "[2023-07-11 22:16:31,498] [INFO] (highdicom.seg.sop) - add plane #81 for segment #1\n", + "[2023-07-11 22:16:31,498] [INFO] (highdicom.seg.sop) - add plane #82 for segment #1\n", + "[2023-07-11 22:16:31,499] [INFO] (highdicom.seg.sop) - add plane #83 for segment #1\n", + "[2023-07-11 22:16:31,499] [INFO] (highdicom.seg.sop) - add plane #84 for segment #1\n", + "[2023-07-11 22:16:31,500] [INFO] (highdicom.seg.sop) - add plane #85 for segment #1\n", + "[2023-07-11 22:16:31,501] [INFO] (highdicom.seg.sop) - add plane #86 for segment #1\n", + "[2023-07-11 22:16:31,532] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 22:16:31,532] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", + "[2023-07-11 22:16:31,532] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 22:16:31,532] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", + "[2023-07-11 22:16:31,532] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", + "[2023-07-11 22:16:31,532] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 22:16:31,532] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", + "[2023-07-11 22:16:31,532] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", + "[2023-07-11 22:16:31,533] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", "\u001b[34mDone performing execution of operator DICOMSegmentationWriterOperator\n", "\u001b[39m\n", "\u001b[34mGoing to initiate execution of operator DICOMSegmentationWriterOperator\u001b[39m\n", - "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 1, Operator ID: 7add3bb6-313b-48da-87d0-cd85fe929151)\u001b[39m\n", - "[2023-07-07 21:55:55,658] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", - "[2023-07-07 21:55:55,659] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", - "[2023-07-07 21:55:55,660] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", - "[2023-07-07 21:55:55,661] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", - "[2023-07-07 21:55:55,662] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", - "[2023-07-07 21:55:55,662] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", - "[2023-07-07 21:55:55,663] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", - "[2023-07-07 21:55:55,664] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", - "[2023-07-07 21:55:55,664] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", - "[2023-07-07 21:55:55,665] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", - "[2023-07-07 21:55:55,666] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", - "[2023-07-07 21:55:55,667] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", - "[2023-07-07 21:55:55,667] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", - "[2023-07-07 21:55:55,668] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", - "[2023-07-07 21:55:55,669] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", - "[2023-07-07 21:55:55,670] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", - "[2023-07-07 21:55:55,671] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", - "[2023-07-07 21:55:55,671] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", - "[2023-07-07 21:55:55,672] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", - "[2023-07-07 21:55:55,673] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", - "[2023-07-07 21:55:55,674] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", - "[2023-07-07 21:55:55,675] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", - "[2023-07-07 21:55:55,675] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", - "[2023-07-07 21:55:55,676] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", - "[2023-07-07 21:55:55,677] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", - "[2023-07-07 21:55:55,678] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", - "[2023-07-07 21:55:55,679] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", - "[2023-07-07 21:55:55,679] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", - "[2023-07-07 21:55:55,680] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", - "[2023-07-07 21:55:55,681] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", - "[2023-07-07 21:55:55,682] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", - "[2023-07-07 21:55:55,683] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", - "[2023-07-07 21:55:55,684] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", - "[2023-07-07 21:55:55,686] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", - "[2023-07-07 21:55:55,687] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", - "[2023-07-07 21:55:55,688] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", - "[2023-07-07 21:55:55,688] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", - "[2023-07-07 21:55:55,689] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", - "[2023-07-07 21:55:55,690] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", - "[2023-07-07 21:55:55,691] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", - "[2023-07-07 21:55:55,691] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", - "[2023-07-07 21:55:55,692] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", - "[2023-07-07 21:55:55,693] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", - "[2023-07-07 21:55:55,693] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", - "[2023-07-07 21:55:55,694] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", - "[2023-07-07 21:55:55,695] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", - "[2023-07-07 21:55:55,695] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", - "[2023-07-07 21:55:55,696] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", - "[2023-07-07 21:55:55,697] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", - "[2023-07-07 21:55:55,698] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", - "[2023-07-07 21:55:55,698] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", - "[2023-07-07 21:55:55,699] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", - "[2023-07-07 21:55:55,700] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", - "[2023-07-07 21:55:55,700] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", - "[2023-07-07 21:55:55,701] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", - "[2023-07-07 21:55:55,702] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", - "[2023-07-07 21:55:55,703] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", - "[2023-07-07 21:55:55,703] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", - "[2023-07-07 21:55:55,704] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", - "[2023-07-07 21:55:55,705] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", - "[2023-07-07 21:55:55,705] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", - "[2023-07-07 21:55:55,706] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", - "[2023-07-07 21:55:55,707] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", - "[2023-07-07 21:55:55,708] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", - "[2023-07-07 21:55:55,709] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", - "[2023-07-07 21:55:55,710] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", - "[2023-07-07 21:55:55,711] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", - "[2023-07-07 21:55:55,712] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", - "[2023-07-07 21:55:55,745] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 21:55:55,745] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", - "[2023-07-07 21:55:55,745] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 21:55:55,746] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", - "[2023-07-07 21:55:55,746] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", - "[2023-07-07 21:55:55,746] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", - "[2023-07-07 21:55:55,746] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", - "[2023-07-07 21:55:55,746] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", - "[2023-07-07 21:55:55,746] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", + "\u001b[32mExecuting operator DICOMSegmentationWriterOperator \u001b[33m(Process ID: 1, Operator ID: 512f9fd5-addb-42e3-b3b8-3d04b1534d99)\u001b[39m\n", + "[2023-07-11 22:16:33,595] [INFO] (highdicom.seg.sop) - add plane #0 for segment #1\n", + "[2023-07-11 22:16:33,596] [INFO] (highdicom.seg.sop) - add plane #1 for segment #1\n", + "[2023-07-11 22:16:33,597] [INFO] (highdicom.seg.sop) - add plane #2 for segment #1\n", + "[2023-07-11 22:16:33,597] [INFO] (highdicom.seg.sop) - add plane #3 for segment #1\n", + "[2023-07-11 22:16:33,598] [INFO] (highdicom.seg.sop) - add plane #4 for segment #1\n", + "[2023-07-11 22:16:33,599] [INFO] (highdicom.seg.sop) - add plane #5 for segment #1\n", + "[2023-07-11 22:16:33,599] [INFO] (highdicom.seg.sop) - add plane #6 for segment #1\n", + "[2023-07-11 22:16:33,600] [INFO] (highdicom.seg.sop) - add plane #7 for segment #1\n", + "[2023-07-11 22:16:33,601] [INFO] (highdicom.seg.sop) - add plane #8 for segment #1\n", + "[2023-07-11 22:16:33,601] [INFO] (highdicom.seg.sop) - add plane #9 for segment #1\n", + "[2023-07-11 22:16:33,602] [INFO] (highdicom.seg.sop) - add plane #10 for segment #1\n", + "[2023-07-11 22:16:33,602] [INFO] (highdicom.seg.sop) - add plane #11 for segment #1\n", + "[2023-07-11 22:16:33,603] [INFO] (highdicom.seg.sop) - add plane #12 for segment #1\n", + "[2023-07-11 22:16:33,604] [INFO] (highdicom.seg.sop) - add plane #13 for segment #1\n", + "[2023-07-11 22:16:33,604] [INFO] (highdicom.seg.sop) - add plane #14 for segment #1\n", + "[2023-07-11 22:16:33,605] [INFO] (highdicom.seg.sop) - add plane #15 for segment #1\n", + "[2023-07-11 22:16:33,606] [INFO] (highdicom.seg.sop) - add plane #16 for segment #1\n", + "[2023-07-11 22:16:33,606] [INFO] (highdicom.seg.sop) - add plane #17 for segment #1\n", + "[2023-07-11 22:16:33,607] [INFO] (highdicom.seg.sop) - add plane #18 for segment #1\n", + "[2023-07-11 22:16:33,607] [INFO] (highdicom.seg.sop) - add plane #19 for segment #1\n", + "[2023-07-11 22:16:33,608] [INFO] (highdicom.seg.sop) - add plane #20 for segment #1\n", + "[2023-07-11 22:16:33,609] [INFO] (highdicom.seg.sop) - add plane #21 for segment #1\n", + "[2023-07-11 22:16:33,609] [INFO] (highdicom.seg.sop) - add plane #22 for segment #1\n", + "[2023-07-11 22:16:33,610] [INFO] (highdicom.seg.sop) - add plane #23 for segment #1\n", + "[2023-07-11 22:16:33,610] [INFO] (highdicom.seg.sop) - add plane #24 for segment #1\n", + "[2023-07-11 22:16:33,611] [INFO] (highdicom.seg.sop) - add plane #25 for segment #1\n", + "[2023-07-11 22:16:33,612] [INFO] (highdicom.seg.sop) - add plane #26 for segment #1\n", + "[2023-07-11 22:16:33,612] [INFO] (highdicom.seg.sop) - add plane #27 for segment #1\n", + "[2023-07-11 22:16:33,613] [INFO] (highdicom.seg.sop) - add plane #28 for segment #1\n", + "[2023-07-11 22:16:33,613] [INFO] (highdicom.seg.sop) - add plane #29 for segment #1\n", + "[2023-07-11 22:16:33,614] [INFO] (highdicom.seg.sop) - add plane #30 for segment #1\n", + "[2023-07-11 22:16:33,615] [INFO] (highdicom.seg.sop) - add plane #31 for segment #1\n", + "[2023-07-11 22:16:33,615] [INFO] (highdicom.seg.sop) - add plane #32 for segment #1\n", + "[2023-07-11 22:16:33,616] [INFO] (highdicom.seg.sop) - add plane #33 for segment #1\n", + "[2023-07-11 22:16:33,617] [INFO] (highdicom.seg.sop) - add plane #34 for segment #1\n", + "[2023-07-11 22:16:33,617] [INFO] (highdicom.seg.sop) - add plane #35 for segment #1\n", + "[2023-07-11 22:16:33,618] [INFO] (highdicom.seg.sop) - add plane #36 for segment #1\n", + "[2023-07-11 22:16:33,618] [INFO] (highdicom.seg.sop) - add plane #37 for segment #1\n", + "[2023-07-11 22:16:33,619] [INFO] (highdicom.seg.sop) - add plane #38 for segment #1\n", + "[2023-07-11 22:16:33,620] [INFO] (highdicom.seg.sop) - add plane #39 for segment #1\n", + "[2023-07-11 22:16:33,620] [INFO] (highdicom.seg.sop) - add plane #40 for segment #1\n", + "[2023-07-11 22:16:33,621] [INFO] (highdicom.seg.sop) - add plane #41 for segment #1\n", + "[2023-07-11 22:16:33,621] [INFO] (highdicom.seg.sop) - add plane #42 for segment #1\n", + "[2023-07-11 22:16:33,622] [INFO] (highdicom.seg.sop) - add plane #43 for segment #1\n", + "[2023-07-11 22:16:33,623] [INFO] (highdicom.seg.sop) - add plane #44 for segment #1\n", + "[2023-07-11 22:16:33,623] [INFO] (highdicom.seg.sop) - add plane #45 for segment #1\n", + "[2023-07-11 22:16:33,624] [INFO] (highdicom.seg.sop) - add plane #46 for segment #1\n", + "[2023-07-11 22:16:33,624] [INFO] (highdicom.seg.sop) - add plane #47 for segment #1\n", + "[2023-07-11 22:16:33,625] [INFO] (highdicom.seg.sop) - add plane #48 for segment #1\n", + "[2023-07-11 22:16:33,626] [INFO] (highdicom.seg.sop) - add plane #49 for segment #1\n", + "[2023-07-11 22:16:33,627] [INFO] (highdicom.seg.sop) - add plane #50 for segment #1\n", + "[2023-07-11 22:16:33,627] [INFO] (highdicom.seg.sop) - add plane #51 for segment #1\n", + "[2023-07-11 22:16:33,628] [INFO] (highdicom.seg.sop) - add plane #52 for segment #1\n", + "[2023-07-11 22:16:33,629] [INFO] (highdicom.seg.sop) - add plane #53 for segment #1\n", + "[2023-07-11 22:16:33,629] [INFO] (highdicom.seg.sop) - add plane #54 for segment #1\n", + "[2023-07-11 22:16:33,630] [INFO] (highdicom.seg.sop) - add plane #55 for segment #1\n", + "[2023-07-11 22:16:33,630] [INFO] (highdicom.seg.sop) - add plane #56 for segment #1\n", + "[2023-07-11 22:16:33,631] [INFO] (highdicom.seg.sop) - add plane #57 for segment #1\n", + "[2023-07-11 22:16:33,632] [INFO] (highdicom.seg.sop) - add plane #58 for segment #1\n", + "[2023-07-11 22:16:33,632] [INFO] (highdicom.seg.sop) - add plane #59 for segment #1\n", + "[2023-07-11 22:16:33,633] [INFO] (highdicom.seg.sop) - add plane #60 for segment #1\n", + "[2023-07-11 22:16:33,633] [INFO] (highdicom.seg.sop) - add plane #61 for segment #1\n", + "[2023-07-11 22:16:33,634] [INFO] (highdicom.seg.sop) - add plane #62 for segment #1\n", + "[2023-07-11 22:16:33,635] [INFO] (highdicom.seg.sop) - add plane #63 for segment #1\n", + "[2023-07-11 22:16:33,635] [INFO] (highdicom.seg.sop) - add plane #64 for segment #1\n", + "[2023-07-11 22:16:33,636] [INFO] (highdicom.seg.sop) - add plane #65 for segment #1\n", + "[2023-07-11 22:16:33,636] [INFO] (highdicom.seg.sop) - add plane #66 for segment #1\n", + "[2023-07-11 22:16:33,637] [INFO] (highdicom.seg.sop) - add plane #67 for segment #1\n", + "[2023-07-11 22:16:33,661] [INFO] (highdicom.base) - copy Image-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 22:16:33,662] [INFO] (highdicom.base) - copy attributes of module \"Specimen\"\n", + "[2023-07-11 22:16:33,662] [INFO] (highdicom.base) - copy Patient-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 22:16:33,662] [INFO] (highdicom.base) - copy attributes of module \"Patient\"\n", + "[2023-07-11 22:16:33,662] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Subject\"\n", + "[2023-07-11 22:16:33,662] [INFO] (highdicom.base) - copy Study-related attributes from dataset \"1.3.6.1.4.1.14519.5.2.1.7085.2626.936983343951485811186213470191\"\n", + "[2023-07-11 22:16:33,662] [INFO] (highdicom.base) - copy attributes of module \"General Study\"\n", + "[2023-07-11 22:16:33,662] [INFO] (highdicom.base) - copy attributes of module \"Patient Study\"\n", + "[2023-07-11 22:16:33,662] [INFO] (highdicom.base) - copy attributes of module \"Clinical Trial Study\"\n", "\u001b[34mDone performing execution of operator DICOMSegmentationWriterOperator\n", "\u001b[39m\n", - "[2023-07-07 21:55:55,826] [INFO] (__main__.App) - End run\n" + "[2023-07-11 22:16:33,737] [INFO] (__main__.App) - End run\n" ] } ], @@ -2545,14 +3207,18 @@ "name": "stdout", "output_type": "stream", "text": [ - "1.2.826.0.1.3680043.10.511.3.11231444010124776175218536511663543.dcm\n", - "1.2.826.0.1.3680043.10.511.3.11779019635288615017320261444184585.dcm\n", - "1.2.826.0.1.3680043.10.511.3.11927807764923034176934830784797996.dcm\n", - "1.2.826.0.1.3680043.10.511.3.26756833125967779911222791720326843.dcm\n", - "1.2.826.0.1.3680043.10.511.3.26951083066705886522839047001116455.dcm\n", - "1.2.826.0.1.3680043.10.511.3.41468577108021529587933891221927885.dcm\n", - "1.2.826.0.1.3680043.10.511.3.60922799005047068192048147966405053.dcm\n", - "1.2.826.0.1.3680043.10.511.3.94363520267823963721211927563964890.dcm\n" + "1.2.826.0.1.3680043.10.511.3.12266592655762762073286392126062966.dcm\n", + "1.2.826.0.1.3680043.10.511.3.12719286001822004155141916629680501.dcm\n", + "1.2.826.0.1.3680043.10.511.3.15339500169092417659022541512329247.dcm\n", + "1.2.826.0.1.3680043.10.511.3.24697193551638784716713524677677957.dcm\n", + "1.2.826.0.1.3680043.10.511.3.37934837791260998209087437259252912.dcm\n", + "1.2.826.0.1.3680043.10.511.3.50237025785527161602225904410697639.dcm\n", + "1.2.826.0.1.3680043.10.511.3.54977758827214805472045204451009422.dcm\n", + "1.2.826.0.1.3680043.10.511.3.59414476300658430862984776445086578.dcm\n", + "1.2.826.0.1.3680043.10.511.3.67667687028841198465134117732621674.dcm\n", + "1.2.826.0.1.3680043.10.511.3.71788865120022471953181030405970912.dcm\n", + "1.2.826.0.1.3680043.10.511.3.84214980859732118016879201737849492.dcm\n", + "1.2.826.0.1.3680043.10.511.3.97339166683317960538431021654501451.dcm\n" ] } ], diff --git a/requirements-dev.txt b/requirements-dev.txt index 440fda6c..6a73a614 100644 --- a/requirements-dev.txt +++ b/requirements-dev.txt @@ -19,8 +19,8 @@ Sphinx==4.1.2 recommonmark==0.6.0 sphinx-autodoc-typehints==1.12.0 sphinx-rtd-theme==0.5.2 -pytest==6.2.4 -pytest-cov==2.12.1 +pytest==7.4.0 +pytest-cov==4.1.0 pytest-lazy-fixture==0.6.3 cucim~=21.06; platform_system == "Linux" monai>=1.0.0 diff --git a/requirements.txt b/requirements.txt index ee919f55..01bfa710 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,4 +1,4 @@ numpy>=1.21.6 networkx>=2.4 colorama>=0.4.1 -typeguard~=2.12.1 +typeguard>=3.0.0 diff --git a/run b/run index 86cb3355..cd2df084 100755 --- a/run +++ b/run @@ -807,7 +807,7 @@ pytest_desc() { c_echo 'Run tests with pytest It executes the following command: - ' "${MONAI_PY_EXE}"' -m py.test --cache-clear -vv \ + ' "${MONAI_PY_EXE}"' -m pytest --cache-clear -vv \ --cov=monai \ --junitxml="'"$TOP/junit-monai-deploy-app-sdk.xml"'" \ --cov-config="'"$TOP/.coveragerc"'" \ @@ -826,7 +826,7 @@ pytest() { local result=0 pushd $TOP > /dev/null - run_command ${MONAI_PY_EXE} -m py.test --cache-clear -vv \ + run_command ${MONAI_PY_EXE} -m pytest --cache-clear -vv \ --cov=monai \ --junitxml="$TOP/junit-monai-deploy-app-sdk.xml" \ --cov-config="$TOP/.coveragerc" \ diff --git a/setup.cfg b/setup.cfg index fa60f6c1..b302ecbd 100644 --- a/setup.cfg +++ b/setup.cfg @@ -11,12 +11,12 @@ license = Apache License 2.0 license_files = LICENSE project_urls = - Documentation=https://docs.monai.io/projects/monai-deploy-app-sdk/en/latest/ + Documentation=https://docs.monai.io/projects/monai-deploy-app-sdk/en/stable/ Bug Tracker=https://github.com/Project-MONAI/monai-deploy-app-sdk/issues Source Code=https://github.com/Project-MONAI/monai-deploy-app-sdk [options] -python_requires = >= 3.7 +python_requires = >= 3.8 # for compiling and develop setup only # no need to specify the versions so that we could # compile for multiple targeted versions. @@ -26,7 +26,7 @@ install_requires = numpy>=1.21.6 networkx>=2.4 colorama>=0.4.1 - typeguard~=2.12.1 + typeguard>=3.0.0 [options.extras_require] all = diff --git a/tests/unit/test_runner.py b/tests/unit/test_runner.py index 704ea0e7..304597d2 100644 --- a/tests/unit/test_runner.py +++ b/tests/unit/test_runner.py @@ -168,8 +168,8 @@ def test_run_app_for_input_output_path_with_space( expected_container_output /= app_manifest["working-directory"] returncode = runner.run_app(sample_map_name, input_path, output_path, app_manifest, faux_pkg_manifest, quiet) - input_path_with_quotes = f'"{input_path.absolute()}"' - output_path_with_quotes = f'"{output_path.absolute()}"' + input_path_with_quotes = '"{}"'.format(input_path.absolute()) # To quiet flake8 complaint + output_path_with_quotes = '"{}"'.format(output_path.absolute()) assert returncode == return_value mock_run_cmd.assert_called_once_with(ContainsString(sample_map_name))