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MMelQinMMelQin
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Update notebook after testing with App SDK on Holoscan v0.6 RC1
Note that apps with more complex graph, with fork and join, terminates early. This issue had came out after some commits in the Holoscan just before RC1. Will file a bug and investigate in Holoscan Signed-off-by: M Q <mingmelvinq@nvidia.com>
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‎notebooks/tutorials/02_mednist_app-prebuilt.ipynb

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"cell_type": "markdown",
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"source": [
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"## Install monai-deploy-app-sdk package"
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"## Clone the github project (the latest version of the main branch only)"
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"Cloning into 'source'...\n",
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"remote: Enumerating objects: 287, done.\u001b[K\n",
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"source": [
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"!rm -rf source \\\n",
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" && git clone --branch main --depth 1 https://github.com/Project-MONAI/monai-deploy-app-sdk.git source \\\n",
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" && rm -rf source/.git"
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"mednist_classifier_monaideploy.py\n"
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],
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"source": [
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"!ls source/examples/apps/mednist_classifier_monaideploy/"
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"attachments": {},
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"cell_type": "markdown",
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"source": [
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"## Install monai-deploy-app-sdk package"
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"Requirement already satisfied: monai-deploy-app-sdk in /home/mqin/src/monai-deploy-app-sdk/.venv/lib/python3.8/site-packages (0.5.0)\n",
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"Requirement already satisfied: networkx>=2.4 in /home/mqin/src/monai-deploy-app-sdk/.venv/lib/python3.8/site-packages (from monai-deploy-app-sdk) (2.8.3)\n",
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"Requirement already satisfied: holoscan>=0.5.0 in /home/mqin/src/monai-deploy-app-sdk/.venv/lib/python3.8/site-packages (from monai-deploy-app-sdk) (0.6.0.dev0+793.g3d7cb40c)\n",
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"Requirement already satisfied: holoscan>=0.5.0 in /home/mqin/src/monai-deploy-app-sdk/.venv/lib/python3.8/site-packages (from monai-deploy-app-sdk) (0.6.0rc1)\n",
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"Downloading...\n",
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"From: https://drive.google.com/uc?id=1yJ4P-xMNEfN6lIOq_u6x1eMAq1_MJu-E\n",
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"To: /home/mqin/src/monai-deploy-app-sdk/notebooks/tutorials/mednist_classifier_data.zip\n",
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"2023-06-30 15:23:58,615 - Finished writing DICOM instance to file output/1.2.826.0.1.3680043.8.498.49419907073056155783653345748112147263.dcm\n",
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"2023-06-30 15:23:58,618 - DICOM SOP instance saved in output/1.2.826.0.1.3680043.8.498.49419907073056155783653345748112147263.dcm\n"
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"2023-07-03 15:43:32,310 - Finished writing DICOM instance to file output/1.2.826.0.1.3680043.8.498.10124578968948227141840411855778377647.dcm\n",
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"/home/mqin/src/monai-deploy-app-sdk/.venv/lib/python3.8/site-packages/pydicom/valuerep.py:290: UserWarning: Invalid value for VR UI: 'xyz'. Please see <https://dicom.nema.org/medical/dicom/current/output/html/part05.html#table_6.2-1> for allowed values for each VR.\n",
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"2023-07-03 15:43:39,657 - Finished writing DICOM instance to file output/1.2.826.0.1.3680043.8.498.83037250127339512361421705762432873573.dcm\n",
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